FFCP PHASE1:Hg19::chr11:62328051..62328075,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr11:62328051..62328075,-
|short_description=p5@MIR3654
|description=CAGE_peak_5_at_MIR3654_5end
|association_with_transcript=-273bp_to_NR_037427_5end
|Entrez...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=100500804 | |EntrezGene=100500804 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=38896 | |HGNC=38896 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-273bp_to_NR_037427_5end | |||
|cluster_id=chr11:62328051..62328075,- | |||
|description=CAGE_peak_5_at_MIR3654_5end | |||
|id=chr11:62328051..62328075,- | |||
|ontology_enrichment_celltype=CL:0000066!1.02e-12!254;CL:0000548!9.75e-09!679;CL:0000004!9.75e-09!679;CL:0000255!9.75e-09!679;CL:0000077!2.24e-08!19;CL:0000012!2.66e-08!682;CL:0002076!2.14e-07!43;CL:1000497!2.69e-07!18;CL:0002518!2.69e-07!18;CL:0000057!9.16e-07!75;CL:1000449!9.64e-07!16 | |||
|ontology_enrichment_celltype_v019=CL:1000507;2.61e-11;10!CL:1000494;2.61e-11;10!CL:1000449;4.38e-11;15!CL:0000077;1.62e-10;19!CL:0000349;1.33e-09;19!CL:1000497;1.62e-09;17!CL:0002518;1.62e-09;17!CL:0002681;8.02e-09;12!CL:0002584;8.02e-09;12!CL:0002577;1.04e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:1000507,3.16e-11,10;CL:1000494,3.16e-11,10;CL:1000449,5.05e-11,15;CL:0000077,2.50e-10,19;CL:0000066,7.73e-10,253;CL:0000349,8.78e-10,19;CL:1000497,1.83e-09,17;CL:0002518,1.83e-09,17;CL:0002681,9.21e-09,12;CL:0002584,9.21e-09,12;CL:0002577,1.05e-07,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002100!2.07e-08!216;UBERON:0005631!4.51e-08!14;UBERON:0000158!4.51e-08!14;UBERON:0006554!7.57e-08!44;UBERON:0004923!1.10e-07!57;UBERON:0001008!2.05e-07!45;UBERON:0004211!9.64e-07!16;UBERON:0001285!9.64e-07!16;UBERON:0007684!9.64e-07!16;UBERON:0003220!9.64e-07!16;UBERON:0004208!9.64e-07!16 | |||
|ontology_enrichment_uberon_v019=UBERON:0004211;2.61e-11;10!UBERON:0009773;2.61e-11;10!UBERON:0001231;2.61e-11;10!UBERON:0004810;2.61e-11;10!UBERON:0006555;4.38e-11;15!UBERON:0004819;4.38e-11;15!UBERON:0001285;4.38e-11;15!UBERON:0007684;4.38e-11;15!UBERON:0005631;9.10e-10;10!UBERON:0000158;9.10e-10;10!UBERON:0002113;7.17e-09;24!UBERON:0011143;7.17e-09;24!UBERON:0001851;7.59e-09;15!UBERON:0001225;8.02e-09;12!UBERON:0008987;8.02e-09;12!UBERON:0003891;1.77e-07;4!UBERON:0000305;2.07e-07;7!UBERON:0000485;2.47e-07;7!UBERON:0000478;4.18e-07;24!UBERON:0000489;7.09e-07;29!UBERON:0000353;9.10e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,3.42e-14,14;UBERON:0000158,3.42e-14,14;UBERON:0004810,3.16e-11,10;UBERON:0004211,5.05e-11,15;UBERON:0009773,5.05e-11,15;UBERON:0001231,5.05e-11,15;UBERON:0001285,5.05e-11,15;UBERON:0007684,5.05e-11,15;UBERON:0004208,5.05e-11,15;UBERON:0006555,3.41e-10,16;UBERON:0004819,3.41e-10,16;UBERON:0001851,8.61e-09,15;UBERON:0001225,9.21e-09,12;UBERON:0008987,9.21e-09,12;UBERON:0003124,3.79e-08,7;UBERON:0002113,5.18e-08,26;UBERON:0003918,5.18e-08,26;UBERON:0011143,5.18e-08,26;UBERON:0005095,5.18e-08,26;UBERON:0007687,5.18e-08,26;UBERON:0006554,7.44e-08,47;UBERON:0000305,1.15e-07,7;UBERON:0001008,1.32e-07,48;UBERON:0003891,2.88e-07,4;UBERON:0000478,3.06e-07,24 | |||
|phase1_expression=0.363356758541113,0.428201047781966,0.845726424575827,3.00219895059391,1.34088328328186,1.74467704820074,2.53299878168311,0,0.261185628199839,0.491467873003018,2.09340350391728,1.96597234917155,1.58260186937072,0.123766352960047,0,1.34465029290355,0,0,0,0.369363174230364,2.04000691244253,0.313454721478088,0,0,0.125542639594803,0,0,0,0,0,0.309632246632152,2.75826367343678,2.71085326900425,1.10926203050036,0,0,0,0,0,0.217010870715852,0,0,0,0,0.377875943688809,0,0,0,0.309706370895104,0.28769239232215,0,0.47296445977717,0,0,0,0.376484679085209,0,0.224723484445085,0.306083892370903,0.320929027076094,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211255286311942,0.212604299965044,0,0.112328631146495,0,0.32145117339416,0.285012743741249,0,0.730656615058536,0,0,0,0,0,0,0,0,0,0,0.764546456250458,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383587685530591,1.0843174571537,1.00267582127178,0.724232594804119,0,0,0.189069634328136,0.886917589850256,0.790513071238134,0.0654895377488563,0.364295288292542,0.370784442784429,0,0.348259474598534,0,0,0,0,0,0.860234595106124,0,0,0,0,0,0.258416759169329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0.993943903390637,0.759783069987479,0,0.286836620748814,0,1.12135520028461,0,0.49333509683432,0,0,0,0.151357427644931,0.576175924479999,0.234321431833797,0.624320153660641,1.71141546463335,0.597794722207204,0.23486899728753,0.161872944368132,0.561803226808994,0.816616685019573,0.737005903870608,0.309977343527296,0,0.247266929278557,0,0.718618141816238,0.505008341862199,0.375355559615893,0.554128230968366,0.877955241761676,0.612975591598039,0.600952235626387,0.226864366320042,0.358779271377724,0.427114777637135,0.847727604638247,0,0.412210116953756,0.257640540045629,1.67505170698431,0,0.194874010322397,0,0.644349290496095,0,0,0.10075209822764,0.67824236924195,0.966304265816484,0.272746120590835,1.14721838155602,0.121973706129595,0.530119073285941,0.232387885739037,0.414644220061482,0.252320850875628,0.72995471815166,0,0.643240938192885,0,0.928735856063958,4.33127689001751,0.354920400119532,0.337169380156203,0.241011029883482,0.772057809126758,0.871517776369625,0.237270619111097,0.269662616320329,0.588664395376038,1.15424147083917,0,0,0.4115740113314,0,0,0,0,0,0.737930631258681,0.686271241194102,0.329250856225877,5.62008766288098,0.402115889646523,0.277765335475589,1.62904152655162,1.03993478527958,0,0,0.234817388471643,0,0,0,0,0,0,0,0,0.93733833986777,0.839910640994298,0.567100388969546,1.61205340865127,0.581267877027924,2.30029607499127,0,0.088048434013226,0,0,0.12624243342638,0.063497894292169,0,0,0,0,0.300343057843917,0,1.56983518083505,0.87192013766656,0.80672114403045,0.258543431515556,0,0,0.531876233169741,0,1.02882949704857,0,0.266422179016099,0,0,0,0.65147236858747,0.355391948742546,0,0.602878754119172,0.871533458600294,2.49932477955143,0,0,0,0,0,0,1.30303176000821,0.61642896765115,0.179060963239896,0,0,0,0.128343036279748,0,0,0,0,0,0,0,0,0,0,0.271265023699736,1.87173775377726,2.14114786556594,2.68094105557689,1.52283839490527,0.601892199455438,0,0,0,0.553107505625109,0.347534457872331,0,0.343143423810856,0.206768026122887,0,0,9.7000822862803,4.99306318531491,4.23346410661552,0.248107807818777,0.153461973288062,0.280660094433074,0.640695746278505,1.53512174720011,0.321707842287215,7.42090332224955,0,0.177561725313127,0.164254312027618,0,0.581051892299796,0.725156697549733,0.200506470303285,0.460404944679482,0.803701137152247,1.45672934405374,0.655622074797121,1.80479845162965,1.30926073077505,2.35304930753057,5.84556898613043,0.73886140225013,0,0,0.215915916102139,1.54227252690289,1.62567862526312,1.00337954770971,1.27438136522519,0.831076008928724,2.0148727924996,0,0,0,0.328014645699706,0,0.309123034943167,0.0915694648183434,0,0,0,0,0.096670718292122,0.308097234229289,0.307007349452259,0.551346289938122,0,0.145016693914229,0.255679882248303,0.356128142586949,0.826424576804891,0.192190067365106,0.127612712494584,0.50578890427775,0,0,0,0,0,0,0.18532421910392,0.715624433709956,0.744316738719335,0,0,1.535386747868,0.42793898803392,0,0,0.359744915166629,0,0.235624804691373,1.01091240786658,3.17020642346017,0,0.48763373908959,0,2.11300293513511,0.545999645631943,0.141405431953713,0,0,1.99031692572366,0.438450885253763,0,0,1.21746226177622,0.6196469961995,1.12678241012897,0.143411352204052,0.392996164052485,0,0.354761064070598,0.422215270595328,0,0,0,1.05844323998063,0.670302275535787,1.08890984861323,0.376575203107117,0.86101074534246,0,0,0.229723400206959,0,0,0,0,0,0,0,0,1.28188885352968,1.92495971052672,0.490080431962063,0.185803175125719,0,0,0,0,0,0,0,0.280797178113459,0,0,0,0,0,0,0,0,0,0.223676107892416,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,9.78852387424529,3.26661148915902,18.7368028280532,0,0,0.222617410045812,0,0,0.19924798825107,0,0,0,0,1.55519793830904,0.269605053441981,1.43216939740487,0,0,0,0,0,0,0,0,0,0.724999575434793,0.1137934482855,0.254253650292766,0.472775363535873,0,0,0.173624994933292,0,0,0,0,0,0,0.21787692703798,1.8125086756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| ||
|short_description=p5@MIR3654 | |||
}} | }} |
Latest revision as of 19:44, 18 September 2015
Short description: | p5@MIR3654 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_MIR3654_5end |
Coexpression cluster: | NA |
Association with transcript: | -273bp_to_NR_037427_5end |
EntrezGene: | MIR3654 |
HGNC: | 38896 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
kidney tubule cell | 3.16e-11 | 10 |
nephron tubule epithelial cell | 3.16e-11 | 10 |
epithelial cell of nephron | 5.05e-11 | 15 |
mesothelial cell | 2.50e-10 | 19 |
epithelial cell | 7.73e-10 | 253 |
extraembryonic cell | 8.78e-10 | 19 |
kidney cell | 1.83e-09 | 17 |
kidney epithelial cell | 1.83e-09 | 17 |
kidney cortical cell | 9.21e-09 | 12 |
renal cortical epithelial cell | 9.21e-09 | 12 |
placental epithelial cell | 1.05e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 3.42e-14 | 14 |
membranous layer | 3.42e-14 | 14 |
nephron tubule epithelium | 3.16e-11 | 10 |
nephron epithelium | 5.05e-11 | 15 |
renal tubule | 5.05e-11 | 15 |
nephron tubule | 5.05e-11 | 15 |
nephron | 5.05e-11 | 15 |
uriniferous tubule | 5.05e-11 | 15 |
nephrogenic mesenchyme | 5.05e-11 | 15 |
excretory tube | 3.41e-10 | 16 |
kidney epithelium | 3.41e-10 | 16 |
cortex | 8.61e-09 | 15 |
cortex of kidney | 9.21e-09 | 12 |
renal parenchyma | 9.21e-09 | 12 |
chorion | 3.79e-08 | 7 |
kidney | 5.18e-08 | 26 |
kidney mesenchyme | 5.18e-08 | 26 |
upper urinary tract | 5.18e-08 | 26 |
kidney rudiment | 5.18e-08 | 26 |
kidney field | 5.18e-08 | 26 |
urinary system structure | 7.44e-08 | 47 |
amnion | 1.15e-07 | 7 |
renal system | 1.32e-07 | 48 |
stroma | 2.88e-07 | 4 |
extraembryonic structure | 3.06e-07 | 24 |