FFCP PHASE1:Hg19::chr3:45838011..45838034,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=54716 | |EntrezGene=54716 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30927 | |HGNC=30927 | ||
|TSSclassifier=strong | |||
|UniProt=Q9NP91,C9JIN6 | |UniProt=Q9NP91,C9JIN6 | ||
|association_with_transcript=0bp_to_ENST00000358525,ENST00000413781,NM_020208,NM_022405,uc011bai.1,uc011baj.1_5end | |association_with_transcript=0bp_to_ENST00000358525,ENST00000413781,NM_020208,NM_022405,uc011bai.1,uc011baj.1_5end | ||
|cluster_id=chr3:45838011..45838034,- | |||
|coexpression_cluster_id=C41 | |coexpression_cluster_id=C41 | ||
|description=CAGE_peak_2_at_SLC6A20_5end | |description=CAGE_peak_2_at_SLC6A20_5end | ||
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|ontology_enrichment_celltype=CL:0002586!9.15e-08!3;CL:0000239!3.85e-07!3;CL:1000615!3.85e-07!3;CL:0002306!3.85e-07!3 | |ontology_enrichment_celltype=CL:0002586!9.15e-08!3;CL:0000239!3.85e-07!3;CL:1000615!3.85e-07!3;CL:0002306!3.85e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0002586;4.48e-18;3!CL:0000149;1.08e-13;4 | |ontology_enrichment_celltype_v019=CL:0002586;4.48e-18;3!CL:0000149;1.08e-13;4 | ||
|ontology_enrichment_celltype_v019_2=CL:0002586,5.34e-18,3;CL:0000149,1.23e-13,4 | |||
|ontology_enrichment_development_v019=UBERON:0003056;4.58e-09;3!UBERON:0006242;2.75e-07;1!UBERON:0005425;2.75e-07;1!UBERON:0010115;4.43e-07;1 | |ontology_enrichment_development_v019=UBERON:0003056;4.58e-09;3!UBERON:0006242;2.75e-07;1!UBERON:0005425;2.75e-07;1!UBERON:0010115;4.43e-07;1 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:3111;4.43e-07;1!DOID:3603;4.43e-07;1 | |ontology_enrichment_disease_v019=DOID:3111;4.43e-07;1!DOID:3603;4.43e-07;1 | ||
|ontology_enrichment_disease_v019_2=DOID:3111,3.82e-07,1;DOID:3603,3.82e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0005743!9.75e-29!86;UBERON:0007023!2.88e-28!115;UBERON:0000073!4.58e-28!94;UBERON:0001016!4.58e-28!94;UBERON:0001049!2.32e-25!57;UBERON:0005068!2.32e-25!57;UBERON:0006241!2.32e-25!57;UBERON:0007135!2.32e-25!57;UBERON:0001017!2.08e-23!82;UBERON:0003075!1.24e-22!86;UBERON:0007284!1.24e-22!86;UBERON:0002346!3.68e-21!90;UBERON:0000955!1.47e-20!69;UBERON:0006238!1.47e-20!69;UBERON:0002616!2.24e-20!59;UBERON:0002780!4.26e-19!41;UBERON:0001890!4.26e-19!41;UBERON:0006240!4.26e-19!41;UBERON:0003080!1.68e-18!42;UBERON:0000033!2.82e-17!123;UBERON:0003056!1.04e-16!61;UBERON:0000153!5.87e-16!129;UBERON:0007811!5.87e-16!129;UBERON:0004121!1.64e-14!169;UBERON:0000924!6.82e-14!173;UBERON:0006601!6.82e-14!173;UBERON:0001893!2.82e-12!34;UBERON:0000062!1.50e-11!511;UBERON:0002791!3.44e-11!33;UBERON:0000489!1.23e-10!32;UBERON:0000160!1.74e-10!27;UBERON:0000481!1.82e-10!347;UBERON:0002619!4.80e-10!22;UBERON:0001894!5.55e-10!7;UBERON:0006222!5.55e-10!7;UBERON:0001869!6.08e-10!32;UBERON:0005409!6.62e-10!35;UBERON:0001950!1.95e-09!20;UBERON:0002020!3.37e-09!34;UBERON:0003528!3.37e-09!34;UBERON:0000475!6.11e-09!365;UBERON:0003296!7.32e-09!4;UBERON:0010133!7.32e-09!4;UBERON:0000956!1.45e-08!25;UBERON:0000203!1.45e-08!25;UBERON:0000064!1.62e-08!219;UBERON:0002108!2.38e-08!14;UBERON:0003076!4.76e-08!15;UBERON:0003057!4.76e-08!15;UBERON:0000966!6.28e-08!5;UBERON:0005388!6.28e-08!5;UBERON:0001802!6.28e-08!5;UBERON:0001781!9.15e-08!3;UBERON:0001782!9.15e-08!3;UBERON:0005424!9.15e-08!3;UBERON:0001896!1.07e-07!3;UBERON:0005290!1.07e-07!3;UBERON:0010096!1.07e-07!3;UBERON:0002240!3.32e-07!3;UBERON:0000025!3.35e-07!194;UBERON:0006853!3.85e-07!3;UBERON:0007685!3.85e-07!3;UBERON:0004134!3.85e-07!3;UBERON:0004111!4.50e-07!241;UBERON:0002113!8.81e-07!27;UBERON:0003918!8.81e-07!27;UBERON:0005095!8.81e-07!27;UBERON:0007687!8.81e-07!27 | |ontology_enrichment_uberon=UBERON:0005743!9.75e-29!86;UBERON:0007023!2.88e-28!115;UBERON:0000073!4.58e-28!94;UBERON:0001016!4.58e-28!94;UBERON:0001049!2.32e-25!57;UBERON:0005068!2.32e-25!57;UBERON:0006241!2.32e-25!57;UBERON:0007135!2.32e-25!57;UBERON:0001017!2.08e-23!82;UBERON:0003075!1.24e-22!86;UBERON:0007284!1.24e-22!86;UBERON:0002346!3.68e-21!90;UBERON:0000955!1.47e-20!69;UBERON:0006238!1.47e-20!69;UBERON:0002616!2.24e-20!59;UBERON:0002780!4.26e-19!41;UBERON:0001890!4.26e-19!41;UBERON:0006240!4.26e-19!41;UBERON:0003080!1.68e-18!42;UBERON:0000033!2.82e-17!123;UBERON:0003056!1.04e-16!61;UBERON:0000153!5.87e-16!129;UBERON:0007811!5.87e-16!129;UBERON:0004121!1.64e-14!169;UBERON:0000924!6.82e-14!173;UBERON:0006601!6.82e-14!173;UBERON:0001893!2.82e-12!34;UBERON:0000062!1.50e-11!511;UBERON:0002791!3.44e-11!33;UBERON:0000489!1.23e-10!32;UBERON:0000160!1.74e-10!27;UBERON:0000481!1.82e-10!347;UBERON:0002619!4.80e-10!22;UBERON:0001894!5.55e-10!7;UBERON:0006222!5.55e-10!7;UBERON:0001869!6.08e-10!32;UBERON:0005409!6.62e-10!35;UBERON:0001950!1.95e-09!20;UBERON:0002020!3.37e-09!34;UBERON:0003528!3.37e-09!34;UBERON:0000475!6.11e-09!365;UBERON:0003296!7.32e-09!4;UBERON:0010133!7.32e-09!4;UBERON:0000956!1.45e-08!25;UBERON:0000203!1.45e-08!25;UBERON:0000064!1.62e-08!219;UBERON:0002108!2.38e-08!14;UBERON:0003076!4.76e-08!15;UBERON:0003057!4.76e-08!15;UBERON:0000966!6.28e-08!5;UBERON:0005388!6.28e-08!5;UBERON:0001802!6.28e-08!5;UBERON:0001781!9.15e-08!3;UBERON:0001782!9.15e-08!3;UBERON:0005424!9.15e-08!3;UBERON:0001896!1.07e-07!3;UBERON:0005290!1.07e-07!3;UBERON:0010096!1.07e-07!3;UBERON:0002240!3.32e-07!3;UBERON:0000025!3.35e-07!194;UBERON:0006853!3.85e-07!3;UBERON:0007685!3.85e-07!3;UBERON:0004134!3.85e-07!3;UBERON:0004111!4.50e-07!241;UBERON:0002113!8.81e-07!27;UBERON:0003918!8.81e-07!27;UBERON:0005095!8.81e-07!27;UBERON:0007687!8.81e-07!27 | ||
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|short_description=p2@SLC6A20 | |short_description=p2@SLC6A20 | ||
}} | }} |
Latest revision as of 09:23, 18 September 2015
Short description: | p2@SLC6A20 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SLC6A20_5end |
Coexpression cluster: | C41_retina_eye_medulla_Retinal_medulloblastoma_kidney_pineal |
Association with transcript: | 0bp_to_ENST00000358525, ENST00000413781, NM_020208, NM_022405, uc011bai.1, uc011baj.1_5end |
EntrezGene: | SLC6A20 |
HGNC: | 30927 |
UniProt: | Q9NP91C9JIN6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
retinal pigment epithelial cell | 5.34e-18 | 3 |
visual pigment cell | 1.23e-13 | 4 |
Ontology term | p-value | n |
---|---|---|
cystadenocarcinoma | 3.82e-07 | 1 |
mucinous cystadenocarcinoma | 3.82e-07 | 1 |