FFCP PHASE1:Hg19::chr1:3371261..3371278,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr1:3371261..3371278,+ to FFCP PHASE1:Hg19::chr1:3371261..3371278,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=27237 | |EntrezGene=27237 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=15515 | |HGNC=15515 | ||
|TSSclassifier=strong | |||
|UniProt=B3KTS4,Q5VV41 | |UniProt=B3KTS4,Q5VV41 | ||
|association_with_transcript=114bp_to_NM_014448,uc001akg.3_5end | |||
|cluster_id=chr1:3371261..3371278,+ | |||
|coexpression_cluster_id=C3973 | |||
|description=CAGE_peak_4_at_ARHGEF16_5end | |||
|id=chr1:3371261..3371278,+ | |||
|ontology_enrichment_celltype=CL:0000066!3.06e-30!254;CL:0000223!2.03e-10!59;CL:0002076!1.12e-09!43 | |||
|ontology_enrichment_celltype_v019=CL:0002322;1.47e-11;5!CL:0000039;3.39e-10;7!CL:0000586;3.39e-10;7!CL:1000507;4.42e-09;10!CL:1000494;4.42e-09;10!CL:0002076;1.32e-08;42!CL:0002251;8.12e-08;20!CL:1000449;2.28e-07;15!CL:0002541;4.59e-07;3!CL:0002178;7.35e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,3.00e-22,253;CL:0002322,1.52e-11,5;CL:0002076,5.07e-10,42;CL:0000039,7.40e-10,7;CL:0000586,7.40e-10,7;CL:1000507,5.41e-09,10;CL:1000494,5.41e-09,10;CL:0000223,9.27e-09,58;CL:0002251,7.37e-08,20;CL:1000449,2.42e-07,15;CL:0002178,7.43e-07,3;CL:0002541,8.04e-07,3 | |||
|ontology_enrichment_development_v019=UBERON:0009117;3.63e-07;10!UBERON:0005564;3.63e-07;10 | |||
|ontology_enrichment_disease=DOID:305!9.76e-30!106;DOID:0050687!1.08e-23!143;DOID:162!2.40e-14!235;DOID:14566!1.09e-13!239;DOID:299!1.76e-07!25;DOID:1749!4.19e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:299;4.70e-10;25!DOID:305;9.16e-09;106 | |||
|ontology_enrichment_disease_v019_2=DOID:305,6.42e-24,106;DOID:0050687,2.67e-16,143;DOID:299,3.56e-10,25;DOID:162,7.02e-09,235;DOID:14566,1.96e-08,239 | |||
|ontology_enrichment_uberon=UBERON:0004119!4.87e-16!169;UBERON:0000925!4.87e-16!169;UBERON:0006595!4.87e-16!169;UBERON:0001007!8.05e-15!155;UBERON:0001555!8.05e-15!155;UBERON:0007026!8.05e-15!155;UBERON:0004921!3.02e-14!129;UBERON:0004185!3.02e-14!129;UBERON:0000077!2.64e-11!130;UBERON:0001041!2.00e-10!98;UBERON:0000466!4.70e-10!126;UBERON:0005177!5.08e-09!107;UBERON:0008947!7.97e-09!38;UBERON:0003258!7.97e-09!38;UBERON:0000464!8.00e-09!104;UBERON:0000065!8.13e-09!53;UBERON:0000064!1.00e-08!219;UBERON:0001004!1.03e-08!72;UBERON:0000072!1.16e-08!46;UBERON:0000063!1.27e-07!97;UBERON:0001737!1.46e-07!9;UBERON:0005911!5.64e-07!82 | |||
|ontology_enrichment_uberon_v019=UBERON:0005409;3.12e-15;22!UBERON:0001737;1.63e-11;9!UBERON:0001557;1.63e-11;9!UBERON:0004921;6.12e-11;33!UBERON:0000160;2.26e-10;17!UBERON:0004211;4.42e-09;10!UBERON:0009773;4.42e-09;10!UBERON:0001231;4.42e-09;10!UBERON:0004810;4.42e-09;10!UBERON:0006555;2.28e-07;15!UBERON:0004819;2.28e-07;15!UBERON:0001285;2.28e-07;15!UBERON:0007684;2.28e-07;15!UBERON:0003124;4.59e-07;3!UBERON:0000920;4.59e-07;3!UBERON:0000072;7.26e-07;37!UBERON:0000945;7.46e-07;5!UBERON:0010039;7.46e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005409,4.16e-13,25;UBERON:0001737,1.23e-11,9;UBERON:0004921,1.83e-11,118;UBERON:0000160,1.69e-10,17;UBERON:0004119,1.13e-09,160;UBERON:0000925,1.13e-09,160;UBERON:0006595,1.13e-09,160;UBERON:0001007,1.33e-09,145;UBERON:0001555,1.33e-09,145;UBERON:0007026,1.33e-09,145;UBERON:0004810,5.41e-09,10;UBERON:0004211,2.42e-07,15;UBERON:0009773,2.42e-07,15;UBERON:0001231,2.42e-07,15;UBERON:0001285,2.42e-07,15;UBERON:0007684,2.42e-07,15;UBERON:0004208,2.42e-07,15;UBERON:0008947,3.45e-07,38;UBERON:0003258,3.45e-07,38;UBERON:0000920,8.04e-07,3;UBERON:0006555,8.71e-07,16;UBERON:0004819,8.71e-07,16;UBERON:0001041,8.78e-07,87 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,2.79120467188971,0.436882744260345,0,0,0,0,0,0,0,0,0,0.313454721478088,0,0,0.376627918784408,0,0,0,0,0,0,0.919421224478927,1.50602959389125,1.47901604066715,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255725123687061,0,0,0,0,0,0.378139268656271,0.665188192387692,0.351339142772504,0.72038491523742,3.64295288292542,2.22470665670658,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258416759169329,0,0,0,0,0,0,0,0.0892997282840798,0,0.225222960966644,0,0,0,0,0,3.48875241714027,0,0,0,0,0,0,0,0,0,0,0,0.454072282934794,0,0.234321431833797,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113432183160021,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.966304265816484,0.272746120590835,0.286804595389004,4.26907971453584,5.03613119621644,3.71820617182459,3.31715376049185,4.03713361401005,5.10968302706162,0,0,0,0,0,1.8929088006375,1.01150814046861,1.44606617930089,0.772057809126758,1.52515610864684,1.18635309555548,2.15730093056263,1.76599318612811,1.92373578473195,0.738155454624648,1.40241773803446,0,0,0,0,0,0,1.96781501668982,0,0.109750285408626,0,0,1.29623823221941,0.325808305310325,0,0,0,0,0,0,0.380508304469197,2.37061319387782,1.71697232418975,0,0,0.148631162288728,1.87467667973554,0.335964256397719,0.425325291727159,0,0.290633938513962,0.766765358330422,0,0,0,0.144119953416961,0,0,0,0,0,0,0,0,1.34557301214433,0.87192013766656,0.80672114403045,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0.199945982364114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.34961388955289,0.686286847621712,0,0,0,0.303127571446259,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.90062679019893,0.200506470303285,0.184161977871793,0,0,0,4.06079651616671,1.15523005656622,3.92174884588428,2.92278449306521,0.527758144464379,0,0,0.215915916102139,0,0.270946437543853,2.00675909541941,1.52925763827023,0,2.23874754722178,0,0,0,0,0,0,0.915694648183434,1.73269949833235,0,0,0,0,0,0,0,0,0,0,0,0.826424576804891,0,1.40373983744043,0.30347334256665,0,0,0,0,0,0,0.18532421910392,0,1.86079184679834,0.316379424718726,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.673554789078584,0,1.08890984861323,0.0941438007767792,0,1.68471475667626,0.443430153536676,1.1486170010348,0,0,0,0,0,0,0,0,0.961416640147258,0,1.71528151186722,0,0,0,0,0,0,0,0,0,0.228234679033192,0,0,0.338583555603207,0,0,0,0,0,0,0.500547425135725,0,0,0,0,0,0,3.92995134857262,0.439524537815682,0.242721043499027,0,0,0.71623345421307,0.296964680832639,0.307160702099232,0,0,0,0,1.68900326502395,0.19924798825107,0.828851746593443,0.755798243562828,0.306806047506464,0,0,0.269605053441981,0.716084698702437,0,0.0986434056369336,0,0,0,0.0927680981618513,0,0.7812832832557,0.699679999969566,0,5.00691172456199,2.03402920234213,12.0557717701648,0.689486746482929,0,0,0,0.120596438625408,0,0.110579259931225,0,0,0.544692317594951,0.139423744278603,0.307801034015188,0,2.07507513949254,0.448788222048861,1.08647371922008,5.10401855571071,1.00757352742049,4.26427820814908,0,0.784901281975124,0,0,0,0,0,0,0,0.979396848954886,1.55488378577335,0,3.98104772431402,2.12298154808014,1.83309043480088,0.593042257361244,0.247127877893006,0.104421949505455,0.404406797884062,0,0,0,0.978323094660449,0,1.57833761139756,2.41981432097328,0,0.063186579628488,0.300646838828985,0.72581733978073,2.65861549082874,0,0,1.19472429772959,1.42304773014896,0,2.42983633669183,1.37189356380129,0.609414446062818,0.34945333648406,0,1.54810130062536,1.16942907337897,1.47807822695777,0.193978032976839,0.794305140223502,0.225980740780532,0,0,0,0.782205530939212,0.480952921509202,2.13452994739353,2.19790570540343,2.16135625731159,0.229073192331831,0.171594997861965,0.288109595976299,0.745515213392595,0.942776138467182,0,0,0,0,0,0,0,0.429765441419957,0,0,0,0,0.199679000498991,0,0,0.0671834724867263,0,2.32991899054908,0.551482276150566,0.741742725430498,0.404421263125109,0.0984274815147488,0,0.795229689809303,0,3.3758161177654,2.47570985875021,1.66176135211674,0,0,0.121499113316049,0.335434687599266,0.315222829196793,2.09818352539992,0.316801009558219,0.537862017998534,0.959575986597226,0,0,0,0,0,0,0,0,0,0,0,1.32506888912221,0.387848869084652,0.39669780522807,0,0,0.106787412567695,0,0,0,0,0,2.55336503108073,0.544017803369474,0,0.306345576763462,0,2.98402782875445,0,0,0,0,0.221858103073705,0.434674820589684,0,0.37494122388632,0.151649117541648,0,0.235265819698172,0,0.28984205722165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.1304703708704,0,0.380805212168795,0,0,0,0,0.398095888698616,0,0,0,0,0,1.71553273099941,1.30497145982606,0.226705925512272,0.231522474323834,0,0,0.617602894321944,0.877136198314828,0.176689145945881,0.964570191354574,0.506827321959218,0,1.0362910251936,1.51929978088691,0.138258436151731,0,0,0,0,0,0.422624246717254,0,0.106691729694141,0,0.567515953566836,0,0.139879507719444,1.24415452006595,0,0,0,0,0.169732529954025,0,0,0,0.318004350653419,0.0788617450012534,0,0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| ||
|short_description=p4@ARHGEF16 | |||
}} | }} |
Latest revision as of 17:02, 17 September 2015
Short description: | p4@ARHGEF16 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_ARHGEF16_5end |
Coexpression cluster: | C3973_bronchogenic_chorionic_hepatoblastoma_small_testicular_rectum_adenocarcinoma |
Association with transcript: | 114bp_to_NM_014448, uc001akg.3_5end |
EntrezGene: | ARHGEF16 |
HGNC: | 15515 |
UniProt: | B3KTS4Q5VV41 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 3.00e-22 | 253 |
embryonic stem cell | 1.52e-11 | 5 |
endo-epithelial cell | 5.07e-10 | 42 |
germ line cell | 7.40e-10 | 7 |
germ cell | 7.40e-10 | 7 |
kidney tubule cell | 5.41e-09 | 10 |
nephron tubule epithelial cell | 5.41e-09 | 10 |
endodermal cell | 9.27e-09 | 58 |
epithelial cell of alimentary canal | 7.37e-08 | 20 |
epithelial cell of nephron | 2.42e-07 | 15 |
epithelial cell of stomach | 7.43e-07 | 3 |
chorionic membrane mesenchymal stem cell | 8.04e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
gastrointestinal system | 4.16e-13 | 25 |
larynx | 1.23e-11 | 9 |
subdivision of digestive tract | 1.83e-11 | 118 |
intestine | 1.69e-10 | 17 |
endoderm-derived structure | 1.13e-09 | 160 |
endoderm | 1.13e-09 | 160 |
presumptive endoderm | 1.13e-09 | 160 |
digestive system | 1.33e-09 | 145 |
digestive tract | 1.33e-09 | 145 |
primitive gut | 1.33e-09 | 145 |
nephron tubule epithelium | 5.41e-09 | 10 |
nephron epithelium | 2.42e-07 | 15 |
renal tubule | 2.42e-07 | 15 |
nephron tubule | 2.42e-07 | 15 |
nephron | 2.42e-07 | 15 |
uriniferous tubule | 2.42e-07 | 15 |
nephrogenic mesenchyme | 2.42e-07 | 15 |
respiratory primordium | 3.45e-07 | 38 |
endoderm of foregut | 3.45e-07 | 38 |
egg chorion | 8.04e-07 | 3 |
excretory tube | 8.71e-07 | 16 |
kidney epithelium | 8.71e-07 | 16 |
foregut | 8.78e-07 | 87 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 6.42e-24 | 106 |
cell type cancer | 2.67e-16 | 143 |
adenocarcinoma | 3.56e-10 | 25 |
cancer | 7.02e-09 | 235 |
disease of cellular proliferation | 1.96e-08 | 239 |