FFCP PHASE1:Hg19::chr2:47596641..47596698,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr2:47596641..47596698,+ to FFCP PHASE1:Hg19::chr2:47596641..47596698,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=4072 | |EntrezGene=4072 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11529 | |HGNC=11529 | ||
|TSSclassifier=strong | |||
|UniProt=C9JKY3 | |UniProt=C9JKY3 | ||
|association_with_transcript=7bp_to_ENST00000419334_5end | |||
|cluster_id=chr2:47596641..47596698,+ | |||
|coexpression_cluster_id=C1908 | |||
|description=CAGE_peak_4_at_EPCAM_5end | |||
|id=chr2:47596641..47596698,+ | |||
|ontology_enrichment_celltype=CL:0000066!4.66e-12!254;CL:0000223!5.87e-08!59;CL:0002076!4.65e-07!43 | |||
|ontology_enrichment_celltype_v019=CL:0002322;8.44e-08;5!CL:0000039;3.73e-07;7!CL:0000586;3.73e-07;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,7.30e-08,5;CL:0000039,4.50e-07,7;CL:0000586,4.50e-07,7 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:305!1.39e-26!106;DOID:0050687!4.30e-17!143;DOID:299!3.80e-13!25;DOID:1749!3.84e-08!14;DOID:162!3.33e-07!235;DOID:14566!8.41e-07!239 | |||
|ontology_enrichment_disease_v019=DOID:299;2.99e-12;25!DOID:305;4.21e-09;106!DOID:3119;2.55e-07;14!DOID:1036;3.78e-07;8 | |||
|ontology_enrichment_disease_v019_2=DOID:305,1.44e-20,106;DOID:0050687,1.46e-14,143;DOID:299,2.39e-12,25;DOID:162,2.07e-08,235;DOID:14566,6.25e-08,239;DOID:3119,2.31e-07,14;DOID:1036,3.15e-07,8 | |||
|ontology_enrichment_uberon=UBERON:0002780!2.51e-18!41;UBERON:0001890!2.51e-18!41;UBERON:0006240!2.51e-18!41;UBERON:0003080!1.45e-17!42;UBERON:0001049!3.26e-17!57;UBERON:0005068!3.26e-17!57;UBERON:0006241!3.26e-17!57;UBERON:0007135!3.26e-17!57;UBERON:0002020!7.76e-15!34;UBERON:0003528!7.76e-15!34;UBERON:0001893!9.08e-15!34;UBERON:0001869!2.38e-14!32;UBERON:0002791!2.99e-14!33;UBERON:0007023!8.60e-14!115;UBERON:0002616!9.23e-14!59;UBERON:0005743!1.71e-13!86;UBERON:0003056!2.21e-13!61;UBERON:0001017!3.17e-13!82;UBERON:0003075!1.39e-12!86;UBERON:0007284!1.39e-12!86;UBERON:0002346!2.89e-11!90;UBERON:0002619!3.05e-11!22;UBERON:0000955!4.89e-11!69;UBERON:0006238!4.89e-11!69;UBERON:0000073!5.09e-11!94;UBERON:0001016!5.09e-11!94;UBERON:0000153!1.77e-10!129;UBERON:0007811!1.77e-10!129;UBERON:0000033!5.28e-10!123;UBERON:0001950!5.32e-10!20;UBERON:0000956!7.29e-10!25;UBERON:0000203!7.29e-10!25;UBERON:0000481!2.72e-09!347;UBERON:0001007!1.36e-08!155;UBERON:0001555!1.36e-08!155;UBERON:0007026!1.36e-08!155;UBERON:0000062!1.49e-08!511;UBERON:0004121!1.71e-08!169;UBERON:0000064!3.07e-08!219;UBERON:0000924!7.98e-08!173;UBERON:0006601!7.98e-08!173;UBERON:0004111!1.39e-07!241;UBERON:0002420!1.48e-07!9;UBERON:0007245!1.48e-07!9;UBERON:0010009!1.48e-07!9;UBERON:0010011!1.48e-07!9;UBERON:0000454!1.48e-07!9;UBERON:0004119!1.48e-07!169;UBERON:0000925!1.48e-07!169;UBERON:0006595!1.48e-07!169;UBERON:0004921!1.98e-07!129;UBERON:0004185!1.98e-07!129;UBERON:0000475!2.41e-07!365;UBERON:0000466!5.06e-07!126;UBERON:0000025!6.01e-07!194 | |||
|ontology_enrichment_uberon_v019=UBERON:0005409;1.75e-11;22!UBERON:0000160;3.89e-10;17!UBERON:0001869;1.21e-08;32!UBERON:0002420;2.25e-08;9!UBERON:0007245;2.25e-08;9!UBERON:0010009;2.25e-08;9!UBERON:0010011;2.25e-08;9!UBERON:0000454;2.25e-08;9!UBERON:0000922;2.72e-08;49!UBERON:0002108;3.49e-08;4!UBERON:0002791;4.98e-08;32!UBERON:0002780;5.29e-08;41!UBERON:0001890;5.29e-08;41!UBERON:0000473;5.59e-08;8!UBERON:0000349;6.26e-08;5!UBERON:0004921;8.95e-08;33!UBERON:0000369;9.58e-08;4!UBERON:0002435;9.58e-08;4!UBERON:0000204;9.58e-08;4!UBERON:0001893;2.45e-07;34!UBERON:0003135;3.33e-07;11!UBERON:0003528;4.43e-07;34!UBERON:0002020;4.43e-07;34 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,2.24e-10,17;UBERON:0005409,6.79e-10,25;UBERON:0002780,4.41e-09,41;UBERON:0001890,4.41e-09,41;UBERON:0003080,4.41e-09,41;UBERON:0006240,4.41e-09,41;UBERON:0001869,8.19e-09,32;UBERON:0011216,1.63e-08,223;UBERON:0002420,2.69e-08,9;UBERON:0007245,2.69e-08,9;UBERON:0010009,2.69e-08,9;UBERON:0010011,2.69e-08,9;UBERON:0000454,2.69e-08,9;UBERON:0002108,2.93e-08,4;UBERON:0001893,4.63e-08,34;UBERON:0000473,5.25e-08,8;UBERON:0000349,7.30e-08,5;UBERON:0002791,8.93e-08,32;UBERON:0000369,9.44e-08,4;UBERON:0002435,9.44e-08,4;UBERON:0000204,9.44e-08,4;UBERON:0010082,9.44e-08,4;UBERON:0003135,3.20e-07,11;UBERON:0003528,4.18e-07,34;UBERON:0002020,4.18e-07,34 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.737201809504527,3.48900583986214,0,0,0,0,0,0,0,0,0,0,0,0,0.136874425072884,0,0.0764134057479513,0,0.0787107813136792,0,0,0,0.919421224478927,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.58030450865046,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.472674085820339,0.886917589850256,0.702678285545008,0.654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.277064115484183,0,0.30648779579902,0,0,0.179389635688862,0,0,0,0,0,0,0.168776332241266,0,0,0,0,0,0.201504196455281,0,0.193260853163297,0.818238361772504,0,2.5614478287215,2.78312513475119,2.67246068599892,3.21349270547648,2.27088765788066,8.75945661781992,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,0,0,0,0,0,5.411491295897,0.171567810298526,0,2.24803506515239,0.804231779293047,0.277765335475589,0,0,0,0.463721619900307,0,0,0,0,1.58040879591855,2.57545848628462,0,0.234004265139238,0,1.87467667973554,0,1.13420077793909,0.0895585227028483,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254094624222463,0,0,0.335032530668698,0,0,0,0,0,0,0.271265023699736,0,0,0.157702415033935,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.280660094433074,0,0,0,0,0,0,0,0,0,5.438675231623,0.40101294060657,0.736647911487171,0,0,0,0.902399225814824,1.84836809050595,0.784349769176855,2.92278449306521,1.89992932007176,0,0,0.215915916102139,0,0.270946437543853,0.501689773854853,1.01950509218015,0.831076008928724,0.895499018888713,0.657779629937804,1.0457418040996,0.256450125116389,0,0.325378394664303,0.103041011647722,1.55668090191184,1.56768049849117,0,0,0,0,0.154048617114644,0,0,0.107420244868274,0,0,0,0,0.576570202095319,0.127612712494584,0.4046311234222,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.274537029736055,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0962221127255121,0,0,0.282431402330337,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0.980160863924127,0,0,0,0,0,0,0,5.51857298466744,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.05279459102193,0,0.121360521749513,0,0,0,0.296964680832639,0,3.97659059106519,2.2507106625682,0,0,4.01138275443188,0,1.93398740871803,3.27512572210559,0,0,0,0.718946809178615,0.716084698702437,0,0,0,0,0,2.13366625772258,1.99613798001194,3.64598865519327,1.57427999993152,0,1.593108275997,2.79679015322043,2.12748913591143,1.03423011972439,0,0,7.97167247232455,4.46206822914009,0,0.331737779793674,0.295547618953547,0.438770794307945,0,0.557694977114413,0,0,0.46112780877612,1.25660702173681,3.04212641381623,0,0.0915975934018623,0,0,0,0,3.60953056987489,5.68581349521445,4.36336126137191,1.89753732724185,7.15214605411704,1.26598838716816,3.91758739581955,2.40300221437699,0.216388639742091,5.97157158647103,1.41532103205343,9.16545217400438,1.48260564340311,4.4483018020741,6.16089502082187,0.202203398942031,0,5.15381780595746,0,0.978323094660449,0,0.394584402849391,4.83962864194656,1.83643656978294,0.063186579628488,0.751617097072463,0.414752765588989,0,0,0,0,5.12297182853627,0,13.1905401134699,0.979923974143776,0.783532859223623,2.44617335538842,0,0.0967563312890851,0.146178634172371,0.656923656425674,0,0,0.225980740780532,0,0,1.13959432720582,1.75996244461323,0.561111741760736,2.56143593687223,0.599428828746391,2.16135625731159,0,5.3194449337209,1.1524383839052,0.248505071130865,0.707082103850386,0,0,0,0,1.20084057741958,0.684526894459965,0,0.429765441419957,0,0.279282401272254,0,0,2.39614800598789,0,0,0.403100834920358,0,1.16495949527454,3.54524320382506,5.10978321963232,3.43758073656343,1.47641222272123,0,3.97614844904652,1.0896272488926,3.85807556316046,2.47570985875021,10.8014487887588,3.37460837327251,1.5476039091159,1.39723980313457,0.335434687599266,1.89133697518076,1.04909176269996,0.739202355635845,0,0.383830394638891,0,0,0,0,0,0,0,3.03742326772554,0.170388021785422,0,0,1.32506888912221,0.517131825446202,0.79339561045614,0,0.704815022316672,0.320362237703084,0.314408610199332,1.65695622138878,0,0,0,1.27668251554036,0,0,0,0,2.66991963625398,2.65820453990096,0.854183854313742,0.500763722825999,0,0.332787154610557,0.434674820589684,0,0,0,0,0,4.21501415226193,2.8984205722165,0,0,0.554805861502613,0,0,0,0,0,0,0,0.159296767163702,0,0,0,0,0,0,0,0,0,0,0,0,0.400027764663154,0,0,0,0,0,0.260994291965212,0,0.463044948647668,0,0,0,0,0,0,0,0,0,0,0.276516872303462,2.53318401491205,0.664324201566815,1.63565394255844,0,0,0.633936370075881,0,1.28030075632969,0,0,0,0.279759015438889,0,0,0,0,0,0,0,0,0,0,0,7.20513673456923,0,0,4.56027498184863,2.8339315265117,0,0.615349092722265,0.504143392443436,0.691572524642179,0,0,0.687034029507179,1.76954585021611,0.550285795565037,1.96393632455575,0,0.690359926060101,0.596748666348824,0.150420656698515,0.20170506870352,0,0.785720083444267,0,1.6264169483875,1.2832141077495,0.781078098613847,0.413373593002368,0.760989722326882,0.546974809018219,0.548257766857182,0,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| ||
|short_description=p4@EPCAM | |||
}} | }} |
Latest revision as of 12:10, 17 September 2015
Short description: | p4@EPCAM |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_EPCAM_5end |
Coexpression cluster: | C1908_smallcell_endometrioid_small_colon_temporal_iPS_duodenum |
Association with transcript: | 7bp_to_ENST00000419334_5end |
EntrezGene: | EPCAM |
HGNC: | 11529 |
UniProt: | C9JKY3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 7.30e-08 | 5 |
germ line cell | 4.50e-07 | 7 |
germ cell | 4.50e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
intestine | 2.24e-10 | 17 |
gastrointestinal system | 6.79e-10 | 25 |
regional part of forebrain | 4.41e-09 | 41 |
forebrain | 4.41e-09 | 41 |
anterior neural tube | 4.41e-09 | 41 |
future forebrain | 4.41e-09 | 41 |
cerebral hemisphere | 8.19e-09 | 32 |
organ system subdivision | 1.63e-08 | 223 |
basal ganglion | 2.69e-08 | 9 |
nuclear complex of neuraxis | 2.69e-08 | 9 |
aggregate regional part of brain | 2.69e-08 | 9 |
collection of basal ganglia | 2.69e-08 | 9 |
cerebral subcortex | 2.69e-08 | 9 |
small intestine | 2.93e-08 | 4 |
telencephalon | 4.63e-08 | 34 |
testis | 5.25e-08 | 8 |
limbic system | 7.30e-08 | 5 |
regional part of telencephalon | 8.93e-08 | 32 |
corpus striatum | 9.44e-08 | 4 |
striatum | 9.44e-08 | 4 |
ventral part of telencephalon | 9.44e-08 | 4 |
future corpus striatum | 9.44e-08 | 4 |
male reproductive organ | 3.20e-07 | 11 |
brain grey matter | 4.18e-07 | 34 |
gray matter | 4.18e-07 | 34 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.44e-20 | 106 |
cell type cancer | 1.46e-14 | 143 |
adenocarcinoma | 2.39e-12 | 25 |
cancer | 2.07e-08 | 235 |
disease of cellular proliferation | 6.25e-08 | 239 |
gastrointestinal system cancer | 2.31e-07 | 14 |
chronic leukemia | 3.15e-07 | 8 |