FFCP PHASE1:Hg19::chr3:190105820..190105829,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10686 | |EntrezGene=10686 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2037 | |HGNC=2037 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-11bp_to_uc003fsi.2,uc010hze.2_5end | |association_with_transcript=-11bp_to_uc003fsi.2,uc010hze.2_5end | ||
|cluster_id=chr3:190105820..190105829,+ | |||
|coexpression_cluster_id=C601 | |||
|description=CAGE_peak_3_at_CLDN16_5end | |description=CAGE_peak_3_at_CLDN16_5end | ||
|id=chr3:190105820..190105829,+ | |id=chr3:190105820..190105829,+ | ||
|ontology_enrichment_celltype=CL:1000507!1.39e-33!12;CL:1000494!1.39e-33!12;CL:0000239!2.68e-26!3;CL:1000615!2.68e-26!3;CL:0002306!2.68e-26!3;CL:1000449!5.03e-25!16;CL:0002681!6.85e-23!13;CL:0002584!6.85e-23!13;CL:1000497!3.61e-22!18;CL:0002518!3.61e-22!18;CL:0002149!1.45e-13!6;CL:0002255!1.45e-13!6;CL:0000313!1.91e-09!1 | |ontology_enrichment_celltype=CL:1000507!1.39e-33!12;CL:1000494!1.39e-33!12;CL:0000239!2.68e-26!3;CL:1000615!2.68e-26!3;CL:0002306!2.68e-26!3;CL:1000449!5.03e-25!16;CL:0002681!6.85e-23!13;CL:0002584!6.85e-23!13;CL:1000497!3.61e-22!18;CL:0002518!3.61e-22!18;CL:0002149!1.45e-13!6;CL:0002255!1.45e-13!6;CL:0000313!1.91e-09!1 | ||
|ontology_enrichment_celltype_v019=CL:0000239;3.86e-38;3!CL:1000615;3.86e-38;3!CL:0002306;3.86e-38;3!CL:0002149;5.89e-20;6!CL:0002255;5.89e-20;6!CL:1000507;3.15e-12;10!CL:1000494;3.15e-12;10!CL:0002681;2.34e-10;12!CL:0002584;2.34e-10;12!CL:1000449;1.78e-08;15!CL:1000497;1.38e-07;17!CL:0002518;1.38e-07;17 | |||
|ontology_enrichment_celltype_v019_2=CL:0000239,3.86e-38,3;CL:1000615,3.86e-38,3;CL:0002306,3.86e-38,3;CL:0002149,5.89e-20,6;CL:0002255,5.89e-20,6;CL:1000507,3.15e-12,10;CL:1000494,3.15e-12,10;CL:0002681,2.34e-10,12;CL:0002584,2.34e-10,12;CL:1000449,1.78e-08,15;CL:1000497,1.38e-07,17;CL:0002518,1.38e-07,17 | |||
|ontology_enrichment_development_v019=UBERON:0007123;5.38e-07;5 | |||
|ontology_enrichment_disease=DOID:4468!3.45e-18!2;DOID:3001!1.45e-13!6;DOID:299!7.85e-12!25;DOID:120!6.41e-11!27;DOID:193!3.93e-10!29;DOID:2355!1.76e-09!1;DOID:2152!1.91e-09!1 | |||
|ontology_enrichment_disease_v019=DOID:3001;5.89e-20;6!DOID:4468;1.33e-15;2!DOID:299;5.46e-11;25!DOID:120;3.16e-10;27!DOID:193;1.44e-09;29 | |||
|ontology_enrichment_disease_v019_2=DOID:3001,5.89e-20,6;DOID:4468,1.33e-15,2;DOID:299,5.46e-11,25;DOID:120,3.16e-10,27;DOID:193,1.44e-09,29 | |||
|ontology_enrichment_uberon=UBERON:0009773!1.39e-33!12;UBERON:0001231!1.39e-33!12;UBERON:0004810!1.39e-33!12;UBERON:0006853!2.68e-26!3;UBERON:0007685!2.68e-26!3;UBERON:0004134!2.68e-26!3;UBERON:0004211!5.03e-25!16;UBERON:0001285!5.03e-25!16;UBERON:0007684!5.03e-25!16;UBERON:0003220!5.03e-25!16;UBERON:0004208!5.03e-25!16;UBERON:0002113!5.98e-24!27;UBERON:0003918!5.98e-24!27;UBERON:0005095!5.98e-24!27;UBERON:0007687!5.98e-24!27;UBERON:0006555!1.63e-23!17;UBERON:0005103!1.63e-23!17;UBERON:0000083!1.63e-23!17;UBERON:0009201!1.63e-23!17;UBERON:0004819!1.63e-23!17;UBERON:0006553!1.63e-23!17;UBERON:0003074!1.63e-23!17;UBERON:0003060!1.63e-23!17;UBERON:0001225!6.85e-23!13;UBERON:0008987!6.85e-23!13;UBERON:0000080!3.61e-22!18;UBERON:0002120!3.61e-22!18;UBERON:0004875!3.61e-22!18;UBERON:0005721!3.61e-22!18;UBERON:0005754!3.61e-22!18;UBERON:0007297!3.61e-22!18;UBERON:0000489!5.20e-20!32;UBERON:0004876!6.99e-20!20;UBERON:0003887!6.68e-19!21;UBERON:0001851!1.59e-18!16;UBERON:0000353!2.07e-17!17;UBERON:0000058!3.98e-15!26;UBERON:0006554!3.36e-14!44;UBERON:0001008!7.42e-14!45;UBERON:0009722!4.17e-12!11;UBERON:0007690!4.17e-12!11;UBERON:0005172!4.25e-11!55;UBERON:0005173!4.25e-11!55;UBERON:0003064!2.10e-10!37;UBERON:0002417!7.08e-10!61;UBERON:0000916!7.08e-10!61;UBERON:0004911!1.91e-09!1;UBERON:0002370!6.11e-09!4;UBERON:0005058!6.11e-09!4;UBERON:0009113!6.11e-09!4;UBERON:0003295!6.11e-09!4;UBERON:0005562!6.11e-09!4;UBERON:0008814!6.32e-09!15;UBERON:0003103!1.41e-08!69;UBERON:0000974!8.29e-08!10;UBERON:0002046!1.32e-07!5;UBERON:0004117!1.32e-07!5;UBERON:0007689!1.32e-07!5;UBERON:0007123!1.32e-07!5;UBERON:0003091!1.32e-07!5;UBERON:0003886!1.81e-07!63 | |||
|ontology_enrichment_uberon_v019=UBERON:0006853;3.86e-38;3!UBERON:0007685;3.86e-38;3!UBERON:0004134;3.86e-38;3!UBERON:0004211;3.15e-12;10!UBERON:0009773;3.15e-12;10!UBERON:0001231;3.15e-12;10!UBERON:0004810;3.15e-12;10!UBERON:0002113;3.01e-11;24!UBERON:0011143;3.01e-11;24!UBERON:0001225;2.34e-10;12!UBERON:0008987;2.34e-10;12!UBERON:0000489;1.98e-09;29!UBERON:0006554;3.87e-09;30!UBERON:0001008;3.87e-09;30!UBERON:0001851;1.78e-08;15!UBERON:0006555;1.78e-08;15!UBERON:0000353;1.78e-08;15!UBERON:0004819;1.78e-08;15!UBERON:0001285;1.78e-08;15!UBERON:0007684;1.78e-08;15!UBERON:0000995;1.09e-07;17!UBERON:0003975;2.60e-07;18!UBERON:0002046;5.38e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0006853,3.86e-38,3;UBERON:0007685,3.86e-38,3;UBERON:0004134,3.86e-38,3;UBERON:0004810,3.15e-12,10;UBERON:0002113,1.94e-10,26;UBERON:0003918,1.94e-10,26;UBERON:0011143,1.94e-10,26;UBERON:0005095,1.94e-10,26;UBERON:0007687,1.94e-10,26;UBERON:0001225,2.34e-10,12;UBERON:0008987,2.34e-10,12;UBERON:0000489,7.27e-09,31;UBERON:0001851,1.78e-08,15;UBERON:0004211,1.78e-08,15;UBERON:0009773,1.78e-08,15;UBERON:0000353,1.78e-08,15;UBERON:0001231,1.78e-08,15;UBERON:0001285,1.78e-08,15;UBERON:0007684,1.78e-08,15;UBERON:0004208,1.78e-08,15;UBERON:0006555,5.27e-08,16;UBERON:0004819,5.27e-08,16;UBERON:0002046,5.38e-07,5;UBERON:0004117,5.38e-07,5;UBERON:0007689,5.38e-07,5;UBERON:0007123,5.38e-07,5;UBERON:0003091,5.38e-07,5 | |||
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|short_description=p3@CLDN16 | |short_description=p3@CLDN16 | ||
}} | }} |
Latest revision as of 09:53, 17 September 2015
Short description: | p3@CLDN16 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_CLDN16_5end |
Coexpression cluster: | C601_endometrial_clear_thyroid_kidney_Renal_serous_endometrioid |
Association with transcript: | -11bp_to_uc003fsi.2, uc010hze.2_5end |
EntrezGene: | CLDN16 |
HGNC: | 2037 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
brush border epithelial cell | 3.86e-38 | 3 |
kidney cortex tubule cell | 3.86e-38 | 3 |
epithelial cell of proximal tubule | 3.86e-38 | 3 |
epithelial cell of uterus | 5.89e-20 | 6 |
stromal cell of endometrium | 5.89e-20 | 6 |
kidney tubule cell | 3.15e-12 | 10 |
nephron tubule epithelial cell | 3.15e-12 | 10 |
kidney cortical cell | 2.34e-10 | 12 |
renal cortical epithelial cell | 2.34e-10 | 12 |
epithelial cell of nephron | 1.78e-08 | 15 |
kidney cell | 1.38e-07 | 17 |
kidney epithelial cell | 1.38e-07 | 17 |
Ontology term | p-value | n |
---|---|---|
renal cortex tubule | 3.86e-38 | 3 |
region of nephron tubule | 3.86e-38 | 3 |
proximal tubule | 3.86e-38 | 3 |
nephron tubule epithelium | 3.15e-12 | 10 |
kidney | 1.94e-10 | 26 |
kidney mesenchyme | 1.94e-10 | 26 |
upper urinary tract | 1.94e-10 | 26 |
kidney rudiment | 1.94e-10 | 26 |
kidney field | 1.94e-10 | 26 |
cortex of kidney | 2.34e-10 | 12 |
renal parenchyma | 2.34e-10 | 12 |
cavitated compound organ | 7.27e-09 | 31 |
cortex | 1.78e-08 | 15 |
nephron epithelium | 1.78e-08 | 15 |
renal tubule | 1.78e-08 | 15 |
parenchyma | 1.78e-08 | 15 |
nephron tubule | 1.78e-08 | 15 |
nephron | 1.78e-08 | 15 |
uriniferous tubule | 1.78e-08 | 15 |
nephrogenic mesenchyme | 1.78e-08 | 15 |
excretory tube | 5.27e-08 | 16 |
kidney epithelium | 5.27e-08 | 16 |
thyroid gland | 5.38e-07 | 5 |
pharyngeal pouch | 5.38e-07 | 5 |
thyroid diverticulum | 5.38e-07 | 5 |
pharyngeal pouch 2 | 5.38e-07 | 5 |
thyroid primordium | 5.38e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
female reproductive endometrioid cancer | 5.89e-20 | 6 |
clear cell adenocarcinoma | 1.33e-15 | 2 |
adenocarcinoma | 5.46e-11 | 25 |
female reproductive organ cancer | 3.16e-10 | 27 |
reproductive organ cancer | 1.44e-09 | 29 |