FFCP PHASE1:Hg19::chr20:34025933..34025963,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=8200 | |EntrezGene=8200 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4220 | |HGNC=4220 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_uc010gfc.1_5end | |association_with_transcript=0bp_to_uc010gfc.1_5end | ||
|cluster_id=chr20:34025933..34025963,- | |||
|coexpression_cluster_id=C2614 | |||
|description=CAGE_peak_2_at_GDF5_5end | |description=CAGE_peak_2_at_GDF5_5end | ||
|id=chr20:34025933..34025963,- | |id=chr20:34025933..34025963,- | ||
|ontology_enrichment_celltype=CL:0000055!4.58e-29!180;CL:0000183!4.80e-16!59;CL:0000057!6.33e-15!75;CL:0000680!5.64e-14!57;CL:0000056!5.64e-14!57;CL:0000355!5.64e-14!57;CL:0000187!9.22e-14!54;CL:0000144!3.51e-11!625;CL:0000393!3.80e-11!60;CL:0000211!3.80e-11!60;CL:0002371!1.32e-10!591;CL:0000192!7.21e-10!42;CL:0000514!7.21e-10!42;CL:0000048!7.90e-10!430;CL:0000723!1.94e-09!436;CL:0000034!7.48e-09!444;CL:0002540!1.59e-07!6;CL:0000630!2.22e-07!9;CL:0000222!2.51e-07!119;CL:0000499!7.82e-07!27 | |ontology_enrichment_celltype=CL:0000055!4.58e-29!180;CL:0000183!4.80e-16!59;CL:0000057!6.33e-15!75;CL:0000680!5.64e-14!57;CL:0000056!5.64e-14!57;CL:0000355!5.64e-14!57;CL:0000187!9.22e-14!54;CL:0000144!3.51e-11!625;CL:0000393!3.80e-11!60;CL:0000211!3.80e-11!60;CL:0002371!1.32e-10!591;CL:0000192!7.21e-10!42;CL:0000514!7.21e-10!42;CL:0000048!7.90e-10!430;CL:0000723!1.94e-09!436;CL:0000034!7.48e-09!444;CL:0002540!1.59e-07!6;CL:0000630!2.22e-07!9;CL:0000222!2.51e-07!119;CL:0000499!7.82e-07!27 | ||
|ontology_enrichment_celltype_v019=CL:0002540;1.02e-11;6!CL:0000138;1.17e-07;6!CL:0000669;1.57e-07;4!CL:0002564;8.10e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002540,9.89e-12,6;CL:0000187,2.39e-08,55;CL:0000057,6.45e-08,76;CL:0000058,1.17e-07,6;CL:0000138,1.17e-07,6;CL:0000680,1.23e-07,58;CL:0000056,1.23e-07,58;CL:0000355,1.23e-07,58;CL:0000669,1.38e-07,4;CL:0000048,5.23e-07,427;CL:0000393,5.33e-07,61;CL:0000211,5.33e-07,61;CL:0000192,7.04e-07,43;CL:0000514,7.04e-07,43;CL:0002564,8.28e-07,3;CL:0000153,9.77e-07,9;CL:0000447,9.77e-07,9 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!2.05e-12!83;UBERON:0002329!2.05e-12!83;UBERON:0003077!2.05e-12!83;UBERON:0003059!2.05e-12!83;UBERON:0007282!2.05e-12!83;UBERON:0009618!2.05e-12!83;UBERON:0007285!2.05e-12!83;UBERON:0001134!3.33e-12!61;UBERON:0002036!3.33e-12!61;UBERON:0003082!3.33e-12!61;UBERON:0004290!5.78e-12!70;UBERON:0002385!2.05e-11!63;UBERON:0001015!2.05e-11!63;UBERON:0000383!2.05e-11!63;UBERON:0000486!1.38e-09!82;UBERON:0000475!6.18e-09!365;UBERON:0005256!1.43e-08!143;UBERON:0000481!9.56e-08!347;UBERON:0002200!1.04e-07!11;UBERON:0006876!1.04e-07!11;UBERON:0001456!1.25e-07!21;UBERON:0001801!2.02e-07!14 | |||
|ontology_enrichment_uberon_v019=UBERON:0006876;2.42e-10;11!UBERON:0011135;2.47e-10;5!UBERON:0002216;2.47e-10;5!UBERON:0011134;2.47e-10;5!UBERON:0002209;2.47e-10;5!UBERON:0002213;2.47e-10;5!UBERON:0007844;2.47e-10;5!UBERON:0011138;2.47e-10;5!UBERON:0001130;2.47e-10;5!UBERON:0001066;2.47e-10;5!UBERON:0001468;2.47e-10;5!UBERON:0004765;1.98e-09;26!UBERON:0001456;2.42e-09;21!UBERON:0002203;2.79e-09;6!UBERON:0001768;2.79e-09;6!UBERON:0002200;2.79e-09;6!UBERON:0004905;2.21e-08;8!UBERON:0000982;2.21e-08;8!UBERON:0004770;2.21e-08;8!UBERON:0000019;1.36e-07;19!UBERON:0000047;1.36e-07;19!UBERON:0004088;1.36e-07;19!UBERON:0010230;1.36e-07;19!UBERON:0001801;1.40e-07;14!UBERON:0000970;4.26e-07;20!UBERON:0002371;5.36e-07;12!UBERON:0003891;6.02e-07;4!UBERON:0002242;8.10e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0006876,1.86e-10,11;UBERON:0011135,2.56e-10,5;UBERON:0002216,2.56e-10,5;UBERON:0011134,2.56e-10,5;UBERON:0002209,2.56e-10,5;UBERON:0002213,2.56e-10,5;UBERON:0005856,2.56e-10,5;UBERON:0005866,2.56e-10,5;UBERON:0005863,2.56e-10,5;UBERON:0007844,2.56e-10,5;UBERON:0011138,2.56e-10,5;UBERON:0001130,2.56e-10,5;UBERON:0001066,2.56e-10,5;UBERON:0001468,2.56e-10,5;UBERON:0002203,1.84e-09,6;UBERON:0001768,1.84e-09,6;UBERON:0002200,1.84e-09,6;UBERON:0001456,1.07e-08,22;UBERON:0004905,2.08e-08,8;UBERON:0000982,2.08e-08,8;UBERON:0004770,2.08e-08,8;UBERON:0001801,1.23e-07,14;UBERON:0005085,1.33e-07,31;UBERON:0000019,4.62e-07,20;UBERON:0000047,4.62e-07,20;UBERON:0010312,4.62e-07,20;UBERON:0004088,4.62e-07,20;UBERON:0010230,4.62e-07,20;UBERON:0003072,4.62e-07,20;UBERON:0004128,4.62e-07,20;UBERON:0003071,4.62e-07,20;UBERON:0007503,5.69e-07,78;UBERON:0007524,6.39e-07,73;UBERON:0003891,7.94e-07,4;UBERON:0002242,8.28e-07,3;UBERON:0003068,8.28e-07,3;UBERON:0002328,8.28e-07,3;UBERON:0004880,8.28e-07,3;UBERON:0001134,8.39e-07,62;UBERON:0002036,8.39e-07,62;UBERON:0003082,8.39e-07,62 | |||
|phase1_expression=0.181678379270557,0.428201047781966,0.704772020479856,0,0.446961094427288,1.74467704820074,0,0.631719873426831,0,0.245733936501509,0,0,0,27.4761303571304,19.2210477922191,2.01697543935533,2.41077811209591,4.38186054232424,3.41552959153355,2.21617904538218,4.28401451612931,0.940364164434263,0,1.50561867580173,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,0,0.383587685530591,7.59022220007589,16.0428131403485,4.92478164466801,3.1811437882044,6.32625331393427,1.79616152611729,3.1042115644759,1.93236528524877,0.196468613246569,0.364295288292542,0,0,0,0,0,0,0,0,0,0,0,0.419499436209906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.51956613997496,3.04541115870403,2.58152958673932,1.77334191099179,5.60677600142307,0,0.74000264525148,2.17847724779836,0.404132016209064,0.163461903113459,1.21085942115945,0.576175924479999,2.34321431833797,0,0,0,0.23486899728753,0,0,0.61246251376468,0.122834317311768,0.309977343527296,0,0,8.19145225744224,21.5585442544872,0,0,0,0,1.22595118319608,0.751190294532984,0.226864366320042,0,0.427114777637135,1.90738711043606,1.50045548042201,2.57631323096097,0.257640540045629,1.11670113798954,0,0.194874010322397,0.252433774244115,0.736399189138395,3.23292113637624,0.355009592516614,0.302256294682921,1.3564847384839,0,0,0,0,0,0.116193942869518,0,0,0,1.56449532329816,0.643240938192885,1.38134921352481,2.3218396401599,5.77503585335668,0,0,0,0,0,0,0,0,0,0,0,0.8231480226628,0,0,0,0,0,0,1.20097467208968,0,0,0,0.0925884451585296,2.28065813717227,1.03993478527958,2.88662684050547,0.695582429850461,0.352226082707465,0,0,0,0,0,0,0,0,0,0,0.141775097242386,0.268675568108545,0,0,0,0,0,0,0,0,0,0,1.71072446022705,0,0,0,0.560655421726804,0.87192013766656,0,0.775630294546667,7.15312891703765,0,0.26593811658487,1.04007436911366,12.3459539645828,5.67396528093113,6.66055447540248,0.142977993658148,6.51145926469732,0,0,0.355391948742546,0.791951872933429,5.12446941001296,0.871533458600294,0.899756920638513,0,0,0,4.0736225433569,1.14861935834114,0,0.144781306667579,0.61642896765115,0,0,0,0,0,0,0,0,0,0,0,0,0,9.93801082925033,23.5080144898048,23.8713220855767,0,0.178428988797162,0,0,4.8151375956435,2.27407504055985,4.1389228517002,7.3064815838898,13.4589493035443,3.82287903659565,5.87403472388222,3.43143423810856,0,0,0,0,0,0.30239029332968,0,0,0,0.640695746278505,0.511707249066704,0.160853921143607,0,0.308419387605311,1.59805552781814,2.38168752440047,0.519254429183621,2.09178681227927,0,0,0.0920809889358963,0.68888668898764,4.18809686415449,7.21184282276833,0,0,7.84349769176855,0,0.633309773357254,0,0,0,0,3.52230368807009,11.5388647986616,0,0,1.34324852833307,0,0,1.02580050046556,0,1.30151357865721,0,0,0,0,0,1.6068392984416,1.7400729292582,1.07834031980251,0.767518373630648,0.275673144969061,3.86712881525785,1.0151168573996,0.93749290157711,0.623224249527161,0,0,0,0,0.464845549297286,0,0,0,0,0,0.37064843820784,0.286249773483982,0,5.06207079549961,2.85945290885737,15.6097652699914,4.70732886837312,0,0,0.359744915166629,1.64722217841633,0.589062011728432,0.404364963146632,1.58510321173008,0,4.8763373908959,0.243713489631284,0,0.545999645631943,0.565621727814851,0,0,0.66343897524122,1.75380354101505,33.5689809874679,10.4943160327461,0.202910376962704,0.6196469961995,0.563391205064483,1.43411352204052,3.92996164052485,1.07001315444375,0,2.74439925886963,0.329294892959902,7.96893664908002,6.64875968465468,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0,0,0,0,0.597743964753209,0,0,0,0,0,0,0,0,0.0986434056369336,0,3.33410970433911,0,0,0,0,0,0,0,0,0,0,0,0,0.885741385813839,0,0,0,0,0,0,0,0.0769502585037971,0.113942055847001,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.242780379534093,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,23.9060585135547,0,0,0,0,0,0,0,0,0.126621591911757,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.600420288709789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,51.5849621666027,0,8.81785872295405,0,0,3.06698439213759,0,0,0,0,0,0,0,0.533937062838473,0,0,0,0,0,0,0,0.5013797880454,0.306345576763462,0,0,0,0,0.1251909307065,0,0,0,0,0,0,0,0,0,0,0.895528817321244,0.467426619694449,4.43844689202091,27.652838770163,38.489888968144,21.3554693183169,0.915360273587694,6.35169879805604,0,0.147855149989634,0,2.24901556081802,0.310525913752519,0.829412415681711,0,0.521745061811734,1.35231848097497,1.90402606084398,0.406870733204662,1.27294061441792,0.751873899297419,6.49647263829891,0.398095888698616,0,0.686791410365586,0.673498977531838,0,0,0,0,0,0,0,3.04451029838529,0,32.6733233872274,4.06385035675526,22.1851144011552,0.506827321959218,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,2.57748330352577,0,0,0,0,0,0,0,0,0,0,1.59002175326709,0,0,1.41070377476274,0,0,0,0.319267718114302,0,0,0.06915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| ||
|short_description=p2@GDF5 | |short_description=p2@GDF5 | ||
}} | }} |
Latest revision as of 20:02, 15 September 2015
Short description: | p2@GDF5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_GDF5_5end |
Coexpression cluster: | C2614_mesenchymal_leiomyoma_mesothelioma_Anulus_Nucleus_Smooth_epithelioid |
Association with transcript: | 0bp_to_uc010gfc.1_5end |
EntrezGene: | GDF5 |
HGNC: | 4220 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesenchymal stem cell of the bone marrow | 9.89e-12 | 6 |
muscle cell | 2.39e-08 | 55 |
fibroblast | 6.45e-08 | 76 |
chondroblast | 1.17e-07 | 6 |
chondrocyte | 1.17e-07 | 6 |
muscle precursor cell | 1.23e-07 | 58 |
myoblast | 1.23e-07 | 58 |
multi-potent skeletal muscle stem cell | 1.23e-07 | 58 |
pericyte cell | 1.38e-07 | 4 |
multi fate stem cell | 5.23e-07 | 427 |
electrically responsive cell | 5.33e-07 | 61 |
electrically active cell | 5.33e-07 | 61 |
smooth muscle cell | 7.04e-07 | 43 |
smooth muscle myoblast | 7.04e-07 | 43 |
nucleus pulposus cell of intervertebral disc | 8.28e-07 | 3 |
GAG secreting cell | 9.77e-07 | 9 |
carbohydrate secreting cell | 9.77e-07 | 9 |