FFCP PHASE1:Hg19::chr3:43532224..43532252,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr3:43532224..43532252,-
|short_description=p@chr3:43532224..43532252,-
|description=CAGE_peak_at_chr3:43532224..43532252,-
|association_with_transcript=NA
|E...") |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr3:43532224..43532252,- | |||
|description=CAGE_peak_at_chr3:43532224..43532252,- | |||
|id=chr3:43532224..43532252,- | |||
|ontology_enrichment_celltype=CL:0000239!1.57e-19!3;CL:1000615!1.57e-19!3;CL:0002306!1.57e-19!3;CL:1000507!5.17e-13!12;CL:1000494!5.17e-13!12;CL:0002681!5.40e-12!13;CL:0002584!5.40e-12!13;CL:1000449!1.07e-09!16;CL:0002231!1.00e-08!3;CL:1000497!1.36e-08!18;CL:0002518!1.36e-08!18;CL:0000167!1.51e-07!1;CL:0000164!1.51e-07!1;CL:0000502!1.51e-07!1;CL:0000172!1.51e-07!1;CL:0000173!1.51e-07!1;CL:0002351!1.51e-07!1 | |||
|ontology_enrichment_celltype_v019=CL:1000507;1.01e-26;10!CL:1000494;1.01e-26;10!CL:0000239;3.29e-23;3!CL:1000615;3.29e-23;3!CL:0002306;3.29e-23;3!CL:0002681;2.40e-22;12!CL:0002584;2.40e-22;12!CL:1000449;5.79e-18;15!CL:1000497;6.76e-16;17!CL:0002518;6.76e-16;17 | |||
|ontology_enrichment_celltype_v019_2=CL:1000507,8.86e-27,10;CL:1000494,8.86e-27,10;CL:0000239,3.29e-23,3;CL:1000615,3.29e-23,3;CL:0002306,3.29e-23,3;CL:0002681,2.15e-22,12;CL:0002584,2.15e-22,12;CL:1000449,5.31e-18,15;CL:1000497,6.25e-16,17;CL:0002518,6.25e-16,17 | |||
|ontology_enrichment_development_v019=UBERON:0007123;1.97e-14;5!UBERON:0007297;1.33e-09;2!UBERON:0003918;1.67e-07;10!UBERON:0007687;1.67e-07;10 | |||
|ontology_enrichment_disease=DOID:4430!1.51e-07!1;DOID:3111!3.01e-07!1;DOID:3603!3.01e-07!1 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0006853!1.57e-19!3;UBERON:0007685!1.57e-19!3;UBERON:0004134!1.57e-19!3;UBERON:0006554!6.71e-15!44;UBERON:0001008!1.60e-14!45;UBERON:0002113!8.31e-14!27;UBERON:0003918!8.31e-14!27;UBERON:0005095!8.31e-14!27;UBERON:0007687!8.31e-14!27;UBERON:0000341!2.34e-13!2;UBERON:0009773!5.17e-13!12;UBERON:0001231!5.17e-13!12;UBERON:0004810!5.17e-13!12;UBERON:0006555!6.84e-13!17;UBERON:0005103!6.84e-13!17;UBERON:0000083!6.84e-13!17;UBERON:0009201!6.84e-13!17;UBERON:0004819!6.84e-13!17;UBERON:0006553!6.84e-13!17;UBERON:0003074!6.84e-13!17;UBERON:0003060!6.84e-13!17;UBERON:0003101!2.33e-12!22;UBERON:0000079!2.33e-12!22;UBERON:0000080!3.83e-12!18;UBERON:0002120!3.83e-12!18;UBERON:0004875!3.83e-12!18;UBERON:0005721!3.83e-12!18;UBERON:0005754!3.83e-12!18;UBERON:0007297!3.83e-12!18;UBERON:0001225!5.40e-12!13;UBERON:0008987!5.40e-12!13;UBERON:0003064!5.61e-12!37;UBERON:0000489!1.84e-11!32;UBERON:0000058!5.36e-11!26;UBERON:0004876!7.17e-11!20;UBERON:0003887!2.52e-10!21;UBERON:0001851!1.07e-09!16;UBERON:0004211!1.07e-09!16;UBERON:0001285!1.07e-09!16;UBERON:0007684!1.07e-09!16;UBERON:0003220!1.07e-09!16;UBERON:0004208!1.07e-09!16;UBERON:0006947!2.87e-09!3;UBERON:0004054!2.87e-09!3;UBERON:0000353!4.11e-09!17;UBERON:0003135!6.13e-09!11;UBERON:0001301!9.71e-08!1;UBERON:0001000!2.07e-07!1;UBERON:0005352!2.07e-07!1;UBERON:0005904!3.74e-07!4;UBERON:0002022!4.90e-07!1 | |||
|ontology_enrichment_uberon_v019=UBERON:0004211;1.01e-26;10!UBERON:0009773;1.01e-26;10!UBERON:0001231;1.01e-26;10!UBERON:0004810;1.01e-26;10!UBERON:0002113;1.72e-24;24!UBERON:0011143;1.72e-24;24!UBERON:0006853;3.29e-23;3!UBERON:0007685;3.29e-23;3!UBERON:0004134;3.29e-23;3!UBERON:0001225;2.40e-22;12!UBERON:0008987;2.40e-22;12!UBERON:0000489;2.93e-20;29!UBERON:0006554;1.40e-19;30!UBERON:0001008;1.40e-19;30!UBERON:0001851;5.79e-18;15!UBERON:0006555;5.79e-18;15!UBERON:0000353;5.79e-18;15!UBERON:0004819;5.79e-18;15!UBERON:0001285;5.79e-18;15!UBERON:0007684;5.79e-18;15!UBERON:0001301;7.37e-18;1!UBERON:0002046;1.97e-14;5!UBERON:0000341;1.33e-09;2!UBERON:0005172;4.16e-08;52!UBERON:0005173;4.16e-08;52!UBERON:0006947;8.15e-07;3!UBERON:0004054;8.15e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002113,1.33e-30,26;UBERON:0003918,1.33e-30,26;UBERON:0011143,1.33e-30,26;UBERON:0005095,1.33e-30,26;UBERON:0007687,1.33e-30,26;UBERON:0004810,8.86e-27,10;UBERON:0006555,7.12e-26,16;UBERON:0004819,7.12e-26,16;UBERON:0000489,1.24e-25,31;UBERON:0006853,3.29e-23,3;UBERON:0007685,3.29e-23,3;UBERON:0004134,3.29e-23,3;UBERON:0001225,2.15e-22,12;UBERON:0008987,2.15e-22,12;UBERON:0001851,5.31e-18,15;UBERON:0004211,5.31e-18,15;UBERON:0009773,5.31e-18,15;UBERON:0000353,5.31e-18,15;UBERON:0001231,5.31e-18,15;UBERON:0001285,5.31e-18,15;UBERON:0007684,5.31e-18,15;UBERON:0004208,5.31e-18,15;UBERON:0001301,7.37e-18,1;UBERON:0006554,8.23e-17,47;UBERON:0001008,1.87e-16,48;UBERON:0005172,1.37e-14,54;UBERON:0005173,1.37e-14,54;UBERON:0002046,2.11e-14,5;UBERON:0004117,2.11e-14,5;UBERON:0007689,2.11e-14,5;UBERON:0007123,2.11e-14,5;UBERON:0003091,2.11e-14,5;UBERON:0002417,4.29e-13,60;UBERON:0000916,4.29e-13,60;UBERON:0005177,1.52e-12,101;UBERON:0003103,1.65e-11,68;UBERON:0009569,3.05e-11,112;UBERON:0000341,1.22e-09,2;UBERON:0009722,4.85e-07,11;UBERON:0007690,4.85e-07,11;UBERON:0006947,8.15e-07,3;UBERON:0004054,8.15e-07,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.491467873003018,0,0.218441372130172,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.523916301990851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.983907508344908,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0.200506470303285,0,0,0,0,2.70719767744447,1.38627606787947,0,0,0,0,0,0,0,0,0,2.29388645740534,5.81753206250107,0.223874754722178,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.564862804660675,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.307160702099232,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.520855522170466,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.394584402849391,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.44617335538842,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0607495566580247,0,2.04894838977915,1.67854682031994,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.06787412567695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211312123358627,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0887023701626388,0,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.392600934460972,0,0,0,0,0,0,0,0,0,0,5.28369952483357,0,0,0,0,0.942706188406504,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.203977659483963,0,0,0,0.0757786982182394,0,0,0,0.213233981900981,2.61870874610114,0,0,0,5.15541982053136,4.24446096812261,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0.491467873003018,0,0.218441372130172,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.523916301990851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.983907508344908,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0.200506470303285,0,0,0,0,2.70719767744447,1.38627606787947,0,0,0,0,0,0,0,0,0,2.29388645740534,5.81753206250107,0.223874754722178,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.564862804660675,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.307160702099232,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.520855522170466,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.394584402849391,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.44617335538842,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0607495566580247,0,2.04894838977915,1.67854682031994,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.06787412567695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211312123358627,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0887023701626388,0,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.392600934460972,0,0,0,0,0,0,0,0,0,0,5.28369952483357,0,0,0,0,0.942706188406504,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.203977659483963,0,0,0,0.0757786982182394,0,0,0,0.213233981900981,2.61870874610114,0,0,0,5.15541982053136,4.24446096812261,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr3:43532224..43532252,- | |||
}} | }} |
Latest revision as of 21:08, 29 July 2015
Short description: | p@chr3:43532224..43532252, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:43532224..43532252, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
kidney tubule cell | 8.86e-27 | 10 |
nephron tubule epithelial cell | 8.86e-27 | 10 |
brush border epithelial cell | 3.29e-23 | 3 |
kidney cortex tubule cell | 3.29e-23 | 3 |
epithelial cell of proximal tubule | 3.29e-23 | 3 |
kidney cortical cell | 2.15e-22 | 12 |
renal cortical epithelial cell | 2.15e-22 | 12 |
epithelial cell of nephron | 5.31e-18 | 15 |
kidney cell | 6.25e-16 | 17 |
kidney epithelial cell | 6.25e-16 | 17 |