FFCP PHASE1:Hg19::chr2:47606991..47607060,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr2:47606991..47607060,+ | |||
|coexpression_cluster_id=C1908 | |||
|description=CAGE_peak_at_chr2:47606991..47607060,+ | |description=CAGE_peak_at_chr2:47606991..47607060,+ | ||
|id=chr2:47606991..47607060,+ | |id=chr2:47606991..47607060,+ | ||
|ontology_enrichment_celltype=CL:0000066!6.03e-12!254;CL:0000223!1.80e-09!59;CL:0000039!3.73e-09!7;CL:0000586!3.73e-09!7;CL:0002076!2.85e-07!43 | |ontology_enrichment_celltype=CL:0000066!6.03e-12!254;CL:0000223!1.80e-09!59;CL:0000039!3.73e-09!7;CL:0000586!3.73e-09!7;CL:0002076!2.85e-07!43 | ||
|ontology_enrichment_celltype_v019=CL:0000039;8.17e-13;7!CL:0000586;8.17e-13;7!CL:0002322;1.42e-11;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000039,6.37e-13,7;CL:0000586,6.37e-13,7;CL:0000066,1.05e-11,253;CL:0002322,1.25e-11,5;CL:0000223,2.82e-09,58;CL:0002076,4.40e-07,42 | |||
|ontology_enrichment_development_v019=UBERON:0009117;5.28e-09;10!UBERON:0005564;5.28e-09;10!UBERON:0006595;7.98e-07;86 | |||
|ontology_enrichment_disease=DOID:305!1.30e-31!106;DOID:0050687!3.53e-23!143;DOID:299!1.69e-12!25;DOID:162!1.83e-11!235;DOID:1749!5.09e-11!14;DOID:14566!9.09e-11!239 | |ontology_enrichment_disease=DOID:305!1.30e-31!106;DOID:0050687!3.53e-23!143;DOID:299!1.69e-12!25;DOID:162!1.83e-11!235;DOID:1749!5.09e-11!14;DOID:14566!9.09e-11!239 | ||
|ontology_enrichment_disease_v019=DOID:299;1.98e-14;25!DOID:305;2.39e-11;106!DOID:3119;2.46e-10;14 | |||
|ontology_enrichment_disease_v019_2=DOID:305,1.85e-30,106;DOID:0050687,1.29e-23,143;DOID:299,1.49e-14,25;DOID:162,5.93e-12,235;DOID:14566,1.84e-11,239;DOID:3119,2.45e-10,14 | |||
|ontology_enrichment_uberon=UBERON:0001007!1.29e-12!155;UBERON:0001555!1.29e-12!155;UBERON:0007026!1.29e-12!155;UBERON:0004921!7.13e-12!129;UBERON:0004185!7.13e-12!129;UBERON:0004119!1.08e-11!169;UBERON:0000925!1.08e-11!169;UBERON:0006595!1.08e-11!169;UBERON:0000466!7.33e-10!126;UBERON:0005409!1.58e-09!35;UBERON:0000464!5.84e-09!104;UBERON:0007023!1.86e-08!115;UBERON:0000160!2.17e-08!27;UBERON:0000077!5.21e-08!130;UBERON:0003135!8.64e-08!11;UBERON:0003101!2.35e-07!22;UBERON:0000079!2.35e-07!22;UBERON:0000473!6.20e-07!8 | |||
|ontology_enrichment_uberon_v019=UBERON:0005409;8.82e-19;22!UBERON:0004921;4.22e-17;33!UBERON:0000160;2.79e-15;17!UBERON:0000922;5.48e-09;49!UBERON:0002108;6.91e-09;4!UBERON:0003135;6.74e-08;11!UBERON:0000473;6.97e-08;8!UBERON:0000059;7.90e-08;11!UBERON:0003101;1.38e-07;22!UBERON:0000079;1.38e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005409,2.95e-16,25;UBERON:0000160,2.73e-15,17;UBERON:0004921,9.88e-13,118;UBERON:0001007,2.33e-12,145;UBERON:0001555,2.33e-12,145;UBERON:0007026,2.33e-12,145;UBERON:0004119,3.86e-11,160;UBERON:0000925,3.86e-11,160;UBERON:0006595,3.86e-11,160;UBERON:0002108,7.52e-09,4;UBERON:0000473,6.53e-08,8;UBERON:0003135,6.75e-08,11;UBERON:0000059,7.11e-08,11;UBERON:0003101,1.54e-07,22;UBERON:0000079,1.54e-07,22;UBERON:0005156,4.77e-07,59;UBERON:0000990,4.77e-07,59 | |||
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| ||
|short_description=p@chr2:47606991..47607060,+ | |short_description=p@chr2:47606991..47607060,+ | ||
}} | }} |
Latest revision as of 10:36, 29 July 2015
Short description: | p@chr2:47606991..47607060, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:47606991..47607060, + |
Coexpression cluster: | C1908_smallcell_endometrioid_small_colon_temporal_iPS_duodenum |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
germ line cell | 6.37e-13 | 7 |
germ cell | 6.37e-13 | 7 |
epithelial cell | 1.05e-11 | 253 |
embryonic stem cell | 1.25e-11 | 5 |
endodermal cell | 2.82e-09 | 58 |
endo-epithelial cell | 4.40e-07 | 42 |
Ontology term | p-value | n |
---|---|---|
gastrointestinal system | 2.95e-16 | 25 |
intestine | 2.73e-15 | 17 |
subdivision of digestive tract | 9.88e-13 | 118 |
digestive system | 2.33e-12 | 145 |
digestive tract | 2.33e-12 | 145 |
primitive gut | 2.33e-12 | 145 |
endoderm-derived structure | 3.86e-11 | 160 |
endoderm | 3.86e-11 | 160 |
presumptive endoderm | 3.86e-11 | 160 |
small intestine | 7.52e-09 | 4 |
testis | 6.53e-08 | 8 |
male reproductive organ | 6.75e-08 | 11 |
large intestine | 7.11e-08 | 11 |
male organism | 1.54e-07 | 22 |
male reproductive system | 1.54e-07 | 22 |
reproductive structure | 4.77e-07 | 59 |
reproductive system | 4.77e-07 | 59 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.85e-30 | 106 |
cell type cancer | 1.29e-23 | 143 |
adenocarcinoma | 1.49e-14 | 25 |
cancer | 5.93e-12 | 235 |
disease of cellular proliferation | 1.84e-11 | 239 |
gastrointestinal system cancer | 2.45e-10 | 14 |