FFCP PHASE1:Hg19::chr2:169067958..169067963,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr2:169067958..169067963,+ to FFCP PHASE1:Hg19::chr2:169067958..169067963,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr2:169067958..169067963,+ | |||
|description=CAGE_peak_at_chr2:169067958..169067963,+ | |||
|id=chr2:169067958..169067963,+ | |||
|ontology_enrichment_celltype=CL:0000066!2.05e-11!254;CL:0000223!8.37e-11!59;CL:0002076!5.98e-10!43;CL:0002057!4.93e-09!42;CL:0000860!4.84e-08!45 | |||
|ontology_enrichment_celltype_v019=CL:1000507;7.08e-16;10!CL:1000494;7.08e-16;10!CL:1000449;3.47e-14;15!CL:1000497;2.09e-12;17!CL:0002518;2.09e-12;17!CL:0002681;1.59e-09;12!CL:0002584;1.59e-09;12!CL:0002076;2.05e-09;42!CL:0000322;3.27e-07;3!CL:0000239;3.64e-07;3!CL:1000615;3.64e-07;3!CL:0002306;3.64e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:1000507,1.12e-15,10;CL:1000494,1.12e-15,10;CL:1000449,4.91e-14,15;CL:1000497,2.83e-12,17;CL:0002518,2.83e-12,17;CL:0002076,2.95e-11,42;CL:0000066,7.95e-10,253;CL:0002681,2.24e-09,12;CL:0002584,2.24e-09,12;CL:0000223,3.66e-09,58;CL:0000322,4.26e-07,3;CL:0000239,5.61e-07,3;CL:1000615,5.61e-07,3;CL:0002306,5.61e-07,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:305!4.34e-15!106;DOID:1749!2.76e-11!14;DOID:0050687!4.91e-10!143;DOID:7!6.55e-09!39 | |||
|ontology_enrichment_disease_v019=DOID:1749;1.73e-15;14 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,1.73e-15,14;DOID:305,5.61e-09,106 | |||
|ontology_enrichment_uberon=UBERON:0004119!1.19e-08!169;UBERON:0000925!1.19e-08!169;UBERON:0006595!1.19e-08!169;UBERON:0006554!4.04e-08!44;UBERON:0001008!8.19e-08!45;UBERON:0001007!9.17e-08!155;UBERON:0001555!9.17e-08!155;UBERON:0007026!9.17e-08!155;UBERON:0004921!4.22e-07!129;UBERON:0004185!4.22e-07!129;UBERON:0000058!6.28e-07!26;UBERON:0005911!7.77e-07!82 | |||
|ontology_enrichment_uberon_v019=UBERON:0004211;7.08e-16;10!UBERON:0009773;7.08e-16;10!UBERON:0001231;7.08e-16;10!UBERON:0004810;7.08e-16;10!UBERON:0006555;3.47e-14;15!UBERON:0004819;3.47e-14;15!UBERON:0001285;3.47e-14;15!UBERON:0007684;3.47e-14;15!UBERON:0003127;5.55e-10;2!UBERON:0001225;1.59e-09;12!UBERON:0008987;1.59e-09;12!UBERON:0002113;1.63e-08;24!UBERON:0011143;1.63e-08;24!UBERON:0001851;1.47e-07;15!UBERON:0000353;1.47e-07;15!UBERON:0004821;3.27e-07;3!UBERON:0007499;3.27e-07;3!UBERON:0003215;3.27e-07;3!UBERON:0010368;3.27e-07;3!UBERON:0009911;3.27e-07;3!UBERON:0002299;3.27e-07;3!UBERON:0006524;3.27e-07;3!UBERON:0008874;3.27e-07;3!UBERON:0002169;3.27e-07;3!UBERON:0004894;3.27e-07;3!UBERON:0006853;3.64e-07;3!UBERON:0007685;3.64e-07;3!UBERON:0004134;3.64e-07;3!UBERON:0000489;6.93e-07;29 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004810,1.12e-15,10;UBERON:0004211,4.91e-14,15;UBERON:0009773,4.91e-14,15;UBERON:0001231,4.91e-14,15;UBERON:0001285,4.91e-14,15;UBERON:0007684,4.91e-14,15;UBERON:0004208,4.91e-14,15;UBERON:0006555,4.23e-13,16;UBERON:0004819,4.23e-13,16;UBERON:0003127,2.54e-10,2;UBERON:0001225,2.24e-09,12;UBERON:0008987,2.24e-09,12;UBERON:0002113,1.05e-07,26;UBERON:0003918,1.05e-07,26;UBERON:0011143,1.05e-07,26;UBERON:0005095,1.05e-07,26;UBERON:0007687,1.05e-07,26;UBERON:0001851,1.92e-07,15;UBERON:0000353,1.92e-07,15;UBERON:0004821,4.26e-07,3;UBERON:0003215,4.26e-07,3;UBERON:0010368,4.26e-07,3;UBERON:0009911,4.26e-07,3;UBERON:0002299,4.26e-07,3;UBERON:0006524,4.26e-07,3;UBERON:0008874,4.26e-07,3;UBERON:0002169,4.26e-07,3;UBERON:0004894,4.26e-07,3;UBERON:0006853,5.61e-07,3;UBERON:0007685,5.61e-07,3;UBERON:0004134,5.61e-07,3;UBERON:0005177,6.42e-07,101 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,1.22866968250754,7.6758128476967,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383829398097213,0.154816123316076,0,0.30120591877825,0,0,0,0,0.553995408531877,0,0,0,0,0,0.436194716338694,0,0,0.464858073811369,0.411167888021826,0.619412741790207,0.575384784644301,0.512321413058201,1.18241114944293,1.03423704220986,1.93645405075148,1.35426486594342,0,0.272906150057846,0.449446968890169,0.306083892370903,0,0.639337125799041,0,0.199463657621632,0,0,0,0,1.50749199154046,1.0429658368404,1.95469960234605,0,0.368277635987565,0.949387162322653,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.68152568894461,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201606743224732,0,0.144824403882799,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0.364295288292542,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132409180813219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211931901159562,0,0,0,0,0,0,0,0,0,0,0,0.169560592310488,0,0.272746120590835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.72183813960359,0,0.109750285408626,0,0.100528972411631,0.0925884451585296,0,0,1.44331342025273,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144119953416961,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215627574859517,0.128343036279748,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821271560138091,0,0,2.41718899183244,0,0.276242966807689,0.114814448164607,0,0,1.80479845162965,1.00119938235739,1.56869953835371,1.46139224653261,0.527758144464379,0,0,0,0,0,0,1.01950509218015,2.49322802678617,0,0,0,0,0,0,0.515205058238611,0,0,0,0,0,0.096670718292122,0,0,0.137836572484531,0,0,0.0852266274161009,0.0890320356467374,0.165284915360978,0.192190067365106,2.67986696238627,0.708104465988849,0,0,0,0,0,0,0.18532421910392,0,0,0,0,0,0,0,0,0.179872457583315,0,0,0.202182481573316,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0962221127255121,0,0,0.282431402330337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.490080431962063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.222617410045812,0,0,0.19924798825107,0,0,0,0,0,0.359473404589307,2.68531762013414,0,0.0986434056369336,0,0,0,0,0,0.520855522170466,0.699679999969566,0,0.341380344856499,3.55955110409873,0,0,0,0,0,0,0,0,0,0,0,0.557694977114413,0,0,0,0,0,0.31900115973192,0.0915975934018623,0.533034776018635,0,0,0,0,0,0,0,0,0.421996129056054,1.95879369790977,0,0,0,0.265372693510018,0,0,0,0,0.067401132980677,0,0,0,18.0011449417523,0,0,0,0,0,0,0,0,0,0,0,1.70765727617876,0,0.867798691675654,1.66587075604442,2.61177619741208,0.34945333648406,0,0,0,0,0.0969890164884194,0,0,0,0,0,0,0.160317640503067,0.213452994739353,0,0,0,0,0.864328787928898,0.372757606696298,0.235694034616795,0.135904206073614,0.104602846312333,0,0,0,0,0,0,0,0,0,0,0.599037001496973,0,0,0.134366944973453,0,0,0.630265458457789,0.576911008668165,0.471824806979294,0.295282444544246,0,0,0,0,0,0,0,0.77380195455795,0,0,0.157611414598396,0.104909176269996,0.105600336519406,0,0,0,0,0,0,0,0.326587360109409,0,0,0.170388021785422,0,0,1.32506888912221,0,0,0,0,0.320362237703084,0,0.414239055347196,0,0,0.121792598380896,7.66009509324218,0,0,0,0.327872630709804,0,0,0,0,0,0,0,0,0,0,0,0.235265819698172,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.782982875895635,0,0,0,0.179088841081487,0,0,0,0,0,0.256241518587947,0,0,0,0,0,0,0,0,0.422624246717254,0,0.106691729694141,0,0,0,0.979156554036111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.47221577751538,0.589848616738702,0,4.85207797831421,0,0.690359926060101,0,0,0,0,0,0,0.887136517302272,0,0,0,0,0,0,0,0.175871244359621,0.511049710558381,0,0,0,0,0,0,0,0,0,1.89110145414349,0.778619813244484,0.078493092850514,0,4.76462677633441,0,0.647782773655864,0.9555033757741,0,0,0,0,0,0,0,1.38251932362818,0,0,0,0,26.1181830140217,0,0,0,1.3741032706134,0.243835849964539,0,0,0,0,0,0,0,0,0,1.50962843566674,1.08043821351123,0,10.3469805199535,0,0.235676547101626,0,0,0,0,0,0,0,1.2498775702396,0.705789743431384,1.5245859670942,0.730336388246517,0,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.426467963801962,0,0,0.0620747142958579,0.224263725161227,0,0,0,0,0.134704106029175,1.93649954560226,1.66330178273007,0.488419611665847,0.426909383510862,0,0.538951212639521,2.34640942403454,0,0,0,0,0 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| ||
|short_description=p@chr2:169067958..169067963,+ | |||
}} | }} |
Latest revision as of 02:14, 29 July 2015
Short description: | p@chr2:169067958..169067963, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:169067958..169067963, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
kidney tubule cell | 1.12e-15 | 10 |
nephron tubule epithelial cell | 1.12e-15 | 10 |
epithelial cell of nephron | 4.91e-14 | 15 |
kidney cell | 2.83e-12 | 17 |
kidney epithelial cell | 2.83e-12 | 17 |
endo-epithelial cell | 2.95e-11 | 42 |
epithelial cell | 7.95e-10 | 253 |
kidney cortical cell | 2.24e-09 | 12 |
renal cortical epithelial cell | 2.24e-09 | 12 |
endodermal cell | 3.66e-09 | 58 |
pneumocyte | 4.26e-07 | 3 |
brush border epithelial cell | 5.61e-07 | 3 |
kidney cortex tubule cell | 5.61e-07 | 3 |
epithelial cell of proximal tubule | 5.61e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
nephron tubule epithelium | 1.12e-15 | 10 |
nephron epithelium | 4.91e-14 | 15 |
renal tubule | 4.91e-14 | 15 |
nephron tubule | 4.91e-14 | 15 |
nephron | 4.91e-14 | 15 |
uriniferous tubule | 4.91e-14 | 15 |
nephrogenic mesenchyme | 4.91e-14 | 15 |
excretory tube | 4.23e-13 | 16 |
kidney epithelium | 4.23e-13 | 16 |
open tracheal system trachea | 2.54e-10 | 2 |
cortex of kidney | 2.24e-09 | 12 |
renal parenchyma | 2.24e-09 | 12 |
kidney | 1.05e-07 | 26 |
kidney mesenchyme | 1.05e-07 | 26 |
upper urinary tract | 1.05e-07 | 26 |
kidney rudiment | 1.05e-07 | 26 |
kidney field | 1.05e-07 | 26 |
cortex | 1.92e-07 | 15 |
parenchyma | 1.92e-07 | 15 |
pulmonary alveolus epithelium | 4.26e-07 | 3 |
alveolus | 4.26e-07 | 3 |
pulmonary lobule | 4.26e-07 | 3 |
lobule | 4.26e-07 | 3 |
alveolus of lung | 4.26e-07 | 3 |
alveolar system | 4.26e-07 | 3 |
pulmonary acinus | 4.26e-07 | 3 |
alveolar sac | 4.26e-07 | 3 |
alveolar wall | 4.26e-07 | 3 |
renal cortex tubule | 5.61e-07 | 3 |
region of nephron tubule | 5.61e-07 | 3 |
proximal tubule | 5.61e-07 | 3 |
trunk region element | 6.42e-07 | 101 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 1.73e-15 | 14 |
carcinoma | 5.61e-09 | 106 |