FFCP PHASE1:Hg19::chr19:49713967..49713986,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr19:49713967..49713986,+ | |||
|coexpression_cluster_id=C2459 | |||
|description=CAGE_peak_at_chr19:49713967..49713986,+ | |description=CAGE_peak_at_chr19:49713967..49713986,+ | ||
|id=chr19:49713967..49713986,+ | |id=chr19:49713967..49713986,+ | ||
|ontology_enrichment_celltype=CL:0000147!3.60e-15!14;CL:0000148!5.40e-12!10;CL:0000541!5.40e-12!10;CL:0000075!9.51e-09!27;CL:0000710!5.99e-08!20 | |ontology_enrichment_celltype=CL:0000147!3.60e-15!14;CL:0000148!5.40e-12!10;CL:0000541!5.40e-12!10;CL:0000075!9.51e-09!27;CL:0000710!5.99e-08!20 | ||
|ontology_enrichment_celltype_v019=CL:0000148;2.87e-24;10!CL:0000147;9.21e-24;14!CL:0002322;3.51e-12;5!CL:0000710;5.92e-11;20!CL:0000075;8.29e-11;27!CL:0000138;1.25e-09;6!CL:0002567;2.42e-08;3!CL:0002564;5.36e-08;3!CL:0002321;2.26e-07;15!CL:0002504;4.50e-07;3!CL:1000279;4.50e-07;3!CL:1000280;4.50e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000148,2.27e-24,10;CL:0000541,2.27e-24,10;CL:0000147,7.96e-24,14;CL:0002322,2.71e-12,5;CL:0000710,5.30e-11,20;CL:0000075,6.65e-11,27;CL:0000058,1.30e-09,6;CL:0000138,1.30e-09,6;CL:0002567,2.37e-08,3;CL:0002564,5.18e-08,3;CL:0002504,3.77e-07,3;CL:1000279,3.77e-07,3;CL:1000280,3.77e-07,3;CL:0000333,4.13e-07,41;CL:0002077,9.13e-07,34 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:171;1.22e-09;10!DOID:3095;4.35e-08;22!DOID:2994;4.35e-08;22 | |||
|ontology_enrichment_disease_v019_2=DOID:171,1.22e-09,10;DOID:3095,4.77e-08,22;DOID:2994,4.77e-08,22 | |||
|ontology_enrichment_uberon=UBERON:0002104!2.61e-08!21;UBERON:0001032!1.23e-07!24;UBERON:0004456!1.23e-07!24;UBERON:0000970!1.37e-07!20;UBERON:0003887!1.42e-07!21;UBERON:0000466!3.70e-07!126;UBERON:0000019!4.42e-07!19;UBERON:0000047!4.42e-07!19;UBERON:0004088!4.42e-07!19;UBERON:0003072!4.42e-07!19;UBERON:0003071!4.42e-07!19;UBERON:0004128!4.42e-07!19;UBERON:0000020!5.76e-07!23;UBERON:0006555!6.62e-07!17;UBERON:0005103!6.62e-07!17;UBERON:0000083!6.62e-07!17;UBERON:0009201!6.62e-07!17;UBERON:0004819!6.62e-07!17;UBERON:0006553!6.62e-07!17;UBERON:0003074!6.62e-07!17;UBERON:0003060!6.62e-07!17;UBERON:0000481!6.86e-07!347 | |ontology_enrichment_uberon=UBERON:0002104!2.61e-08!21;UBERON:0001032!1.23e-07!24;UBERON:0004456!1.23e-07!24;UBERON:0000970!1.37e-07!20;UBERON:0003887!1.42e-07!21;UBERON:0000466!3.70e-07!126;UBERON:0000019!4.42e-07!19;UBERON:0000047!4.42e-07!19;UBERON:0004088!4.42e-07!19;UBERON:0003072!4.42e-07!19;UBERON:0003071!4.42e-07!19;UBERON:0004128!4.42e-07!19;UBERON:0000020!5.76e-07!23;UBERON:0006555!6.62e-07!17;UBERON:0005103!6.62e-07!17;UBERON:0000083!6.62e-07!17;UBERON:0009201!6.62e-07!17;UBERON:0004819!6.62e-07!17;UBERON:0006553!6.62e-07!17;UBERON:0003074!6.62e-07!17;UBERON:0003060!6.62e-07!17;UBERON:0000481!6.86e-07!347 | ||
|ontology_enrichment_uberon_v019=UBERON:0011135;1.79e-12;5!UBERON:0002216;1.79e-12;5!UBERON:0011134;1.79e-12;5!UBERON:0002209;1.79e-12;5!UBERON:0002213;1.79e-12;5!UBERON:0007844;1.79e-12;5!UBERON:0011138;1.79e-12;5!UBERON:0001130;1.79e-12;5!UBERON:0001066;1.79e-12;5!UBERON:0001468;1.79e-12;5!UBERON:0002346;1.06e-11;4!UBERON:0000923;1.06e-11;4!UBERON:0010316;1.06e-11;4!UBERON:0005291;1.06e-11;4!UBERON:0002050;2.49e-09;5!UBERON:0005423;2.49e-09;5!UBERON:0002242;5.36e-08;3!UBERON:0004905;1.25e-07;8!UBERON:0000982;1.25e-07;8!UBERON:0004770;1.25e-07;8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0011135,1.59e-12,5;UBERON:0002216,1.59e-12,5;UBERON:0011134,1.59e-12,5;UBERON:0002209,1.59e-12,5;UBERON:0002213,1.59e-12,5;UBERON:0005856,1.59e-12,5;UBERON:0005866,1.59e-12,5;UBERON:0005863,1.59e-12,5;UBERON:0007844,1.59e-12,5;UBERON:0011138,1.59e-12,5;UBERON:0001130,1.59e-12,5;UBERON:0001066,1.59e-12,5;UBERON:0001468,1.59e-12,5;UBERON:0002242,5.18e-08,3;UBERON:0003068,5.18e-08,3;UBERON:0002328,5.18e-08,3;UBERON:0004880,5.18e-08,3;UBERON:0004905,1.16e-07,8;UBERON:0000982,1.16e-07,8;UBERON:0004770,1.16e-07,8 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,1.47440361900905,1.39560233594486,0,0,4.57935505952172,3.97676850873499,0,0,0,0,0.738726348460727,1.22400414746552,0,0.85870796139317,0.684372125364421,0.125542639594803,0,0,0,0,0,0,0.919421224478927,0,0,0,0,0.293600439334847,0,0,0,0,0.32389366601898,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.661044872784862,0,0,0,0,0,0,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383587685530591,1.0843174571537,2.00535164254356,2.60723734129483,1.5905718941022,4.86634870302636,0.189069634328136,0.443458794925128,0.263504357079378,0.523916301990851,0,2.22470665670658,0,0,0.26591592103773,0.476981248610684,1.71598473234038,1.48583000531826,0,0,0,0,0,0.275118041940067,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560677600142307,0,0,0,0,0,0,0,0.468642863667593,0,0,0,0.352303495931295,0.485618833104395,0.140450806702248,0,0.491337269247072,0,0,0,0.910161361938026,0.718618141816238,0.505008341862199,0.875829639103749,0,0,0,0,0,0,0,0,0.300091096084402,0,0,0,0,0,0,0,0,0,0,0.169560592310488,0,0,0,2.31750041646231,2.51806559810822,2.5562667431294,2.798848485415,5.04641701751257,0,0,0.643240938192885,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.057870056657,0,24.0834566161479,31.450470933684,18.9052770138049,0,0,0.686271241194102,0,0,0,0.185176890317059,0.325808305310325,0,1.44331342025273,0.231860809950154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207328115540772,0,0,7.49275152647595,3.4378958300245,4.68869788840188,3.4214489204541,4.52440967894623,7.20823338825402,14.5771480641595,0,0,0,0,0,0,0,0,0.514414748524284,0,0,0.57191197463259,0,0,0,0,0,0,0,0.399891964728228,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335032530668698,0,0,0,0,3.6807447515742,5.00170521059677,1.35632511849868,0.207970861530807,0,0,0,0,0,1.03473071292505,0,0.184369168541703,0,0,0,0,0,0,0,0,0,0,0,0.280660094433074,0,0,0.160853921143607,0,0,0,0,0,0,0,0.200506470303285,0,0.114814448164607,0,0.393373244878272,0,0.693138033939733,3.13739907670742,5.84556898613043,0.527758144464379,0,0,0.431831832204279,0,2.43851793789468,6.02027728625824,0.764628819135115,0,2.91037181138832,0,0,3.33385162651306,1.31205858279882,0.976135183992909,3.50339439602256,0,0,0,0,0,0,0,0.15350367472613,0.551346289938122,0.429680979473094,1.88521702088497,0.596586391912706,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.79128453917934,0.855877976067841,0,0,1.2591072030832,1.37268514868027,1.64937363283961,0,0,0,5.36397112998549,0,0,0.818999468447914,0.141405431953713,0,0,0,0,2.31510213706675,2.62357900818653,0,0,0,0.286822704408103,0,0,0,0.211107635297664,0,0.75894634753143,2.0996083214699,0,0,0,2.54188262097304,0,0,0,0,0,0,0,0.238231775457789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1605880751037,0,0,0,0,0,0,0,0,0,0,0,0,0.37428108081644,0,0,0,0,0,0,0,0,0,0,0,0,0.19924798825107,1.65770349318689,0,0,0.123084805461069,0,0,0,0,0.197286811273867,0,0,0,0,0,0,0.0874599999961957,0,0.1137934482855,6.10208760702639,0,0,3.49925536059905,0,0,0,0,0,0,0.219385397153973,0,0,0.461701551022782,0,0,3.2312751987518,0,0,0,0,0,0,0,1.57916962432026,0.980312671588698,1.00692952185506,4.74384331810463,0,0,0,0,0,0,0.530745387020035,0,0,0,0,0.067401132980677,0,0,0.182454789215666,0,0,0,2.41981432097328,0,1.13735843331278,0,0,0,0,0,0,0,0,0,0,0,0.873633341210151,0,0,0,0,0.0969890164884194,0,0.451961481561065,0,0,0.0633107959558787,0,0,0.640358984218058,0,0,0,4.11827994868715,0,0,0,0,0,0,0,0.600420288709789,0,0,0,0,0,0,0,0.199679000498991,0,0,0.0671834724867263,0,0,0,0,0,0,0,0,0,2.41129722697529,1.10031549277787,0.415440338029185,0,0,0.0607495566580247,0,0,1.04909176269996,4.64641480685389,0,0,0,0,0,0,0,0,0,0,0,0,9.08623848804111,9.27548222385549,0.129282956361551,0,0,0,0,0.628817220398664,0,0.496166021811951,0.197611631897944,5.60245952552121,0,0,0,0,0,0,0,0,0,0,0.221858103073705,0,0,0,0,0,0,0,0,0,0,0,0,0.251567901752575,0,0,0,0,0,0,0,0.310525913752519,0.414706207840855,0,0,0,0,0.406870733204662,0,0,0.464033759878494,0,0,0,0,0,0,0,0,0,0,1.71315693154527,0,0,0,0,0,0,0,0,0,0,0.779441235357554,0.132864840313363,0.490696182767533,0,0,0,0,0,0,0,0,0,0,0,0,22.1744978016814,0,16.2943228755864,61.8593017495897,38.2961511560317,64.244165566923,0,0,0,0,0,0,0,0.159633859057151,0,0.504143392443436,0,0,1.42769420259154,0,0,0,0,0,0,0,0.526472298444801,0,3.12605604493237,0,0,0,0,0,0,0.126831620387814,0,0,0.496211178389294,24.2702317216276,0,0,0.336283722218824,0,0.682986574053893,0,0,0.342976018874837,0.203909198930495,0,0,0,0.941917114206168,0.157115589916002,0,2.73947616152849,0,0,2.00134323694638,0,0,0,0.801711364730253,0,0,0,0.430227358820278,0,0,0,0,0,0,0,1.17780280338292,0,0,0,1.1598144313382,0,0,0,0,0.11294608203896,0,0,0.231522474323834,1.09279780251979,0,0,0,0.392616934229891,0,0.8453114551668,0,0.281951753939561,0.45120521581504,0.0999411559249289,0,0,0,0.730336388246517,0.458729283404541,0.143339583151451,0,0.0679914901909147,0.872701380680755,0,0,0.924351257262837,0,0,0.109265571963696,0,1.22386595690378,0.534434810531121,0.367579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| ||
|short_description=p@chr19:49713967..49713986,+ | |short_description=p@chr19:49713967..49713986,+ | ||
}} | }} |
Latest revision as of 16:01, 27 July 2015
Short description: | p@chr19:49713967..49713986, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr19:49713967..49713986, + |
Coexpression cluster: | C2459_neuroepithelioma_neuroectodermal_neuroblastoma_Hepatocyte_peripheral_Melanocyte_liver |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
melanocyte | 2.27e-24 | 10 |
melanoblast | 2.27e-24 | 10 |
pigment cell | 7.96e-24 | 14 |
embryonic stem cell | 2.71e-12 | 5 |
neurecto-epithelial cell | 5.30e-11 | 20 |
columnar/cuboidal epithelial cell | 6.65e-11 | 27 |
chondroblast | 1.30e-09 | 6 |
chondrocyte | 1.30e-09 | 6 |
light melanocyte | 2.37e-08 | 3 |
nucleus pulposus cell of intervertebral disc | 5.18e-08 | 3 |
enteric smooth muscle cell | 3.77e-07 | 3 |
smooth muscle cell of large intestine | 3.77e-07 | 3 |
smooth muscle cell of colon | 3.77e-07 | 3 |
migratory neural crest cell | 4.13e-07 | 41 |
ecto-epithelial cell | 9.13e-07 | 34 |
Ontology term | p-value | n |
---|---|---|
intervertebral cartilage | 1.59e-12 | 5 |
symphysis | 1.59e-12 | 5 |
nonsynovial joint | 1.59e-12 | 5 |
fibrous joint | 1.59e-12 | 5 |
cartilaginous joint | 1.59e-12 | 5 |
developing mesenchymal condensation | 1.59e-12 | 5 |
pre-cartilage condensation | 1.59e-12 | 5 |
cartilaginous condensation | 1.59e-12 | 5 |
cartilage element | 1.59e-12 | 5 |
post-cranial axial skeletal system | 1.59e-12 | 5 |
vertebral column | 1.59e-12 | 5 |
intervertebral disk | 1.59e-12 | 5 |
intervertebral joint | 1.59e-12 | 5 |
nucleus pulposus | 5.18e-08 | 3 |
axial mesoderm | 5.18e-08 | 3 |
notochord | 5.18e-08 | 3 |
chordamesoderm | 5.18e-08 | 3 |
articulation | 1.16e-07 | 8 |
skeletal joint | 1.16e-07 | 8 |
articular system | 1.16e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
neuroectodermal tumor | 1.22e-09 | 10 |
germ cell and embryonal cancer | 4.77e-08 | 22 |
germ cell cancer | 4.77e-08 | 22 |