FFCP PHASE1:Hg19::chrX:17653633..17653675,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4810 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7820 | |||
|TSSclassifier=not | |||
|UniProt=Q6T4R5 | |||
|association_with_transcript=220bp_to_ENST00000398097,NM_001136024,uc004cxy.2,uc004cxz.2_5end | |||
|coexpression_cluster_id=C680 | |||
|description=CAGE_peak_3_at_NHS_5end | |||
|id=chrX:17653633..17653675,+ | |||
|ontology_enrichment_celltype=CL:0002322!8.04e-09!5;CL:0002319!2.69e-08!25;CL:0000095!1.11e-07!17;CL:0000123!1.11e-07!17;CL:0000128!1.19e-07!7;CL:0000126!1.19e-07!7;CL:0000127!1.19e-07!7;CL:0002453!1.19e-07!7 | |||
|ontology_enrichment_celltype_v019=CL:0002563;1.38e-10;4!CL:0002253;7.87e-10;2!CL:0002322;4.64e-08;5!CL:0000540;6.08e-07;6!CL:0000404;6.08e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002563,9.99e-11,4;CL:0002253,4.96e-10,2;CL:0002322,3.28e-08,5;CL:0000540,8.75e-07,6;CL:0000031,8.75e-07,6;CL:0000404,8.75e-07,6 | |||
|ontology_enrichment_development_v019=UBERON:0003056;5.64e-07;3!CL:0000031;6.08e-07;6 | |||
|ontology_enrichment_disease=DOID:305!3.45e-09!106;DOID:0050687!1.22e-07!143 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005409!2.55e-10!35;UBERON:0000160!6.56e-10!27;UBERON:0000059!2.02e-08!11;UBERON:0000063!2.06e-08!97;UBERON:0001155!4.79e-08!9;UBERON:0000481!5.42e-08!347;UBERON:0005743!5.75e-08!86;UBERON:0000073!3.47e-07!94;UBERON:0001016!3.47e-07!94;UBERON:0000488!8.90e-07!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0000966;3.79e-14;5!UBERON:0005388;3.79e-14;5!UBERON:0001802;3.79e-14;5!UBERON:0003296;1.23e-10;4!UBERON:0010133;1.23e-10;4!UBERON:0001242;1.38e-10;4!UBERON:0001262;1.38e-10;4!UBERON:0004786;1.38e-10;4!UBERON:0004808;1.38e-10;4!UBERON:0001277;1.38e-10;4!UBERON:0001052;2.43e-10;4!UBERON:0001905;3.09e-10;2!UBERON:0002757;3.09e-10;2!UBERON:0010134;3.09e-10;2!UBERON:0005408;3.09e-10;2!UBERON:0001899;3.09e-10;2!UBERON:0000970;1.50e-09;20!UBERON:0002104;4.75e-09;21!UBERON:0005409;2.23e-08;22!UBERON:0004907;2.33e-08;5!UBERON:0000020;3.51e-08;23!UBERON:0000160;4.91e-08;17!UBERON:0001032;8.41e-08;24!UBERON:0004456;8.41e-08;24!UBERON:0000019;1.49e-07;19!UBERON:0000047;1.49e-07;19!UBERON:0004088;1.49e-07;19!UBERON:0010230;1.49e-07;19!UBERON:0001456;8.96e-07;21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000966,1.24e-11,6;UBERON:0005388,1.24e-11,6;UBERON:0001802,1.24e-11,6;UBERON:0001242,9.99e-11,4;UBERON:0001262,9.99e-11,4;UBERON:0004786,9.99e-11,4;UBERON:0004808,9.99e-11,4;UBERON:0001277,9.99e-11,4;UBERON:0003296,1.03e-10,4;UBERON:0010133,1.03e-10,4;UBERON:0001052,1.30e-10,4;UBERON:0001905,2.77e-10,2;UBERON:0002757,2.77e-10,2;UBERON:0010134,2.77e-10,2;UBERON:0005408,2.77e-10,2;UBERON:0001899,2.77e-10,2;UBERON:0000970,5.80e-09,21;UBERON:0002104,5.80e-09,21;UBERON:0004907,1.42e-08,5;UBERON:0000160,3.73e-08,17;UBERON:0000020,9.97e-08,24;UBERON:0001032,9.97e-08,24;UBERON:0004456,9.97e-08,24;UBERON:0002346,1.26e-07,86;UBERON:0005409,2.14e-07,25;UBERON:0000019,4.46e-07,20;UBERON:0000047,4.46e-07,20;UBERON:0010312,4.46e-07,20;UBERON:0004088,4.46e-07,20;UBERON:0010230,4.46e-07,20;UBERON:0003072,4.46e-07,20;UBERON:0004128,4.46e-07,20;UBERON:0003071,4.46e-07,20;UBERON:0003075,6.00e-07,82;UBERON:0007284,6.00e-07,82 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0.261185628199839,0.245733936501509,0,0,0,0.123766352960047,0,0,0,0,0,0.369363174230364,0.408001382488506,0.313454721478088,0.572471974262113,1.36874425072884,0.627713197974014,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.22895262313288,0.665188192387692,1.75669571386252,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168336113954066,0.125118519871964,0,0,0.30648779579902,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.975789649036763,1.98794652482228,1.74290914304278,0.829288440122964,1.26160425437814,5.10968302706162,0,0,0,0,0,0,0.168584690078102,0,0,0,0,0,0.196221465125346,0,0,0,0,0,0,0,0,0,2.21379189377604,0.171567810298526,0,0,0,0,0,0,0,0,0.352226082707465,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.224262168690721,0.43596006883328,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,1.00034104211935,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.45031339509947,0,0,0,0,0,0.451199612907412,0.0770153371044148,2.35304930753057,0,0.105551628892876,0,0,0,0,0.270946437543853,0,0.254876273045038,0,0.223874754722178,0,0,1.02580050046556,1.31205858279882,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0852266274161009,0.267096106940212,0,0,0,0,0,0,0,0,0,0,0,0,0.372158369359667,0.316379424718726,0.190630193923825,0,0,0,0,0.179872457583315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.37428108081644,0,0,0.66866030566487,0,0,0,0,0,0,0,0,4.85588438694385,0.398495976502139,0.276283915531148,0,0,0,0,0,0,0,0,0,0,0,0,0,0.520855522170466,0,0,1.70690172428249,4.32231205497703,0.472775363535873,0,0,0.173624994933292,0,0,0,0,0,0.438770794307945,0.435753854075961,0,0.384751292518985,0,0,0,0.108647371922008,0,0,0,0,0,0,0,0,0,0,0,0,0,1.83758992864123,5.19332735381019,1.99052386215701,0.353830258013357,0.611030144933625,0,0,0,0.337005664903385,0,0,0,4.50028623543806,0,0,0,0.30607276163049,0,0.150323419414493,0.518440956986236,0,0,0,0,1.42304773014896,0,0,0,0,0,0,0.19351266257817,0.146178634172371,0,0.0969890164884194,0,1.35588444468319,0,0,0,0,0,0.85381197895741,0,86.3101598753095,0,0,0,0.49701014226173,0,0.135904206073614,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.590564889088493,0.423366660328922,0,0,1.12527203925513,1.2378549293751,2.07720169014593,0,0,0,0,0.394028536495991,0.524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0.113312091520126,0,0,0,0,0,0,0,0,0,0,0.197611631897944,0,0,0,0,0,0,0,0,0,0,1.14681839138014,1.10929051536852,0,9.13100990579123,0,0,0,0,0.468334905806882,0.144921028610825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.512483037175893,0,0,0,0,0,0,0,0.245772908753719,0,0,0,0,0,0,0,0,0.511577485214607,0,0,0,2.0367903594483,0,0,0,0,0.552032215008773,0,0,0,0,0,0,0,0.252071696221718,0,0,0,0,1.41563668017288,0,0,0,0,0,0,0,0,0,0,0.591424344868181,0,0,0,0,1.64092442705466,0,0,0,0,2.67850917939143,12.4424977220965,0,1.59363533945908,0.177404740325278,0,0.342976018874837,0,0,0,0,0,0,0,1.82631744101899,2.15927591218621,0,2.64463213453628,3.00225862292181,0,1.73858272302579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.233939463462106,0,0,7.68033357864928,2.96839395212659,0.301925687133347,0.617393264863557,0.655678681511872,0.470317296361523,0,0,0,0,1.2679671827502,0,0,0.0644578879735772,0,0,0,0,0.730336388246517,0,0,0,0.0679914901909147,0,1.0580536810308,0,0,0,1.89249637252618,3.05943601498347,0,0.305966489225945,0.26721740526556,0.275684698604535,0.250707539292375,0.0757786982182394,0,0,0,0.213233981900981,0,0,0,0,0,0,0,0.342233301085281,0.134704106029175,0.286888821570705,0,0,0,0,14.1923819328407,0,0.122241444182866,0,0,0,0 | |||
|short_description=p3@NHS | |||
}} |
Revision as of 04:59, 23 January 2014
Short description: | p3@NHS |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_NHS_5end |
Coexpression cluster: | C680_gastric_signet_pineal_tubular_medulloblastoma_small_anaplastic |
Association with transcript: | 220bp_to_ENST00000398097, NM_001136024, uc004cxy.2, uc004cxz.2_5end |
EntrezGene: | NHS |
HGNC: | 7820 |
UniProt: | Q6T4R5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 9.99e-11 | 4 |
epithelial cell of large intestine | 4.96e-10 | 2 |
embryonic stem cell | 3.28e-08 | 5 |
neuron | 8.75e-07 | 6 |
neuroblast | 8.75e-07 | 6 |
electrically signaling cell | 8.75e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
retina | 1.24e-11 | 6 |
photoreceptor array | 1.24e-11 | 6 |
posterior segment of eyeball | 1.24e-11 | 6 |
intestinal mucosa | 9.99e-11 | 4 |
wall of intestine | 9.99e-11 | 4 |
gastrointestinal system mucosa | 9.99e-11 | 4 |
gastrointestinal system epithelium | 9.99e-11 | 4 |
intestinal epithelium | 9.99e-11 | 4 |
gland of diencephalon | 1.03e-10 | 4 |
neuroendocrine gland | 1.03e-10 | 4 |
rectum | 1.30e-10 | 4 |
pineal body | 2.77e-10 | 2 |
regional part of epithalamus | 2.77e-10 | 2 |
secretory circumventricular organ | 2.77e-10 | 2 |
circumventricular organ | 2.77e-10 | 2 |
epithalamus | 2.77e-10 | 2 |
eye | 5.80e-09 | 21 |
visual system | 5.80e-09 | 21 |
lower digestive tract | 1.42e-08 | 5 |
intestine | 3.73e-08 | 17 |
sense organ | 9.97e-08 | 24 |
sensory system | 9.97e-08 | 24 |
entire sense organ system | 9.97e-08 | 24 |
neurectoderm | 1.26e-07 | 86 |
gastrointestinal system | 2.14e-07 | 25 |
camera-type eye | 4.46e-07 | 20 |
simple eye | 4.46e-07 | 20 |
immature eye | 4.46e-07 | 20 |
ocular region | 4.46e-07 | 20 |
eyeball of camera-type eye | 4.46e-07 | 20 |
optic cup | 4.46e-07 | 20 |
optic vesicle | 4.46e-07 | 20 |
eye primordium | 4.46e-07 | 20 |
neural plate | 6.00e-07 | 82 |
presumptive neural plate | 6.00e-07 | 82 |