FFCP PHASE1:Hg19::chr5:125706998..125707018,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=65983 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24911 | |||
|TSSclassifier=strong | |||
|UniProt=D6REP5 | |||
|association_with_transcript=0bp_to_ENST00000506445_5end | |||
|coexpression_cluster_id=C4458 | |||
|description=CAGE_peak_4_at_GRAMD3_5end | |||
|id=chr5:125706998..125707018,+ | |||
|ontology_enrichment_celltype=CL:0000066!6.92e-15!254;CL:1000497!1.26e-12!18;CL:0002518!1.26e-12!18;CL:0000223!1.67e-12!59;CL:1000449!7.75e-10!16;CL:1000507!1.63e-09!12;CL:1000494!1.63e-09!12;CL:0000181!2.03e-08!12;CL:0000417!2.03e-08!12;CL:0000668!2.03e-08!12;CL:0000414!2.03e-08!12;CL:0000412!2.03e-08!12;CL:0000182!2.03e-08!12;CL:0002681!3.20e-08!13;CL:0002584!3.20e-08!13;CL:0000244!8.66e-07!4;CL:0000731!8.66e-07!4 | |||
|ontology_enrichment_celltype_v019=CL:1000497;1.51e-12;17!CL:0002518;1.51e-12;17!CL:1000507;7.43e-12;10!CL:1000494;7.43e-12;10!CL:0000182;1.61e-10;12!CL:1000449;3.04e-09;15!CL:0000244;3.08e-08;4!CL:0000731;3.08e-08;4!CL:0002681;3.39e-07;12!CL:0002584;3.39e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.90e-17,253;CL:1000497,1.39e-12,17;CL:0002518,1.39e-12,17;CL:0000223,1.51e-12,58;CL:1000507,6.88e-12,10;CL:1000494,6.88e-12,10;CL:0000182,1.38e-10,12;CL:1000449,2.80e-09,15;CL:0000244,3.61e-08,4;CL:0000731,3.61e-08,4;CL:0002681,3.32e-07,12;CL:0002584,3.32e-07,12 | |||
|ontology_enrichment_development_v019=UBERON:0009497;6.54e-15;13!UBERON:0004161;2.73e-11;11!UBERON:0003104;1.03e-10;31!UBERON:0006595;6.69e-10;86!UBERON:0008947;1.15e-09;29!UBERON:0001041;6.84e-09;30!CL:0000223;4.92e-08;58!UBERON:0009847;4.11e-07;3!UBERON:0003353;4.11e-07;3 | |||
|ontology_enrichment_disease=DOID:305!7.42e-18!106;DOID:0050687!6.81e-13!143;DOID:299!1.29e-11!25 | |||
|ontology_enrichment_disease_v019=DOID:299;1.28e-11;25 | |||
|ontology_enrichment_disease_v019_2=DOID:305,1.56e-20,106;DOID:0050687,4.89e-15,143;DOID:299,1.42e-11,25 | |||
|ontology_enrichment_uberon=UBERON:0004119!6.73e-28!169;UBERON:0000925!6.73e-28!169;UBERON:0006595!6.73e-28!169;UBERON:0004921!1.77e-26!129;UBERON:0004185!1.77e-26!129;UBERON:0001008!4.95e-23!45;UBERON:0005172!1.44e-22!55;UBERON:0005173!1.44e-22!55;UBERON:0001007!3.16e-22!155;UBERON:0001555!3.16e-22!155;UBERON:0007026!3.16e-22!155;UBERON:0006554!5.02e-22!44;UBERON:0000077!6.92e-22!130;UBERON:0002417!1.29e-20!61;UBERON:0000916!1.29e-20!61;UBERON:0005177!5.74e-19!107;UBERON:0000466!1.35e-16!126;UBERON:0003104!2.15e-16!238;UBERON:0009142!2.15e-16!238;UBERON:0000058!2.62e-16!26;UBERON:0009497!3.32e-16!25;UBERON:0000015!3.32e-16!25;UBERON:0002423!3.32e-16!25;UBERON:0006235!3.32e-16!25;UBERON:0004161!3.32e-16!25;UBERON:0005911!1.05e-15!82;UBERON:0009856!2.38e-15!26;UBERON:0007499!3.85e-14!25;UBERON:0009569!4.61e-14!113;UBERON:0001041!5.61e-14!98;UBERON:0000489!5.97e-14!32;UBERON:0002113!6.22e-14!27;UBERON:0003918!6.22e-14!27;UBERON:0005095!6.22e-14!27;UBERON:0007687!6.22e-14!27;UBERON:0009854!6.37e-14!23;UBERON:0003064!1.08e-13!37;UBERON:0001737!3.83e-13!9;UBERON:0003929!8.17e-13!54;UBERON:0008835!1.03e-12!22;UBERON:0003894!1.03e-12!22;UBERON:0000080!2.06e-12!18;UBERON:0002120!2.06e-12!18;UBERON:0004875!2.06e-12!18;UBERON:0005721!2.06e-12!18;UBERON:0005754!2.06e-12!18;UBERON:0007297!2.06e-12!18;UBERON:0005409!2.06e-12!35;UBERON:0003887!1.08e-11!21;UBERON:0006555!4.36e-11!17;UBERON:0005103!4.36e-11!17;UBERON:0000083!4.36e-11!17;UBERON:0009201!4.36e-11!17;UBERON:0004819!4.36e-11!17;UBERON:0006553!4.36e-11!17;UBERON:0003074!4.36e-11!17;UBERON:0003060!4.36e-11!17;UBERON:0004876!7.97e-11!20;UBERON:0000160!1.27e-10!27;UBERON:0000481!2.33e-10!347;UBERON:0002100!3.44e-10!216;UBERON:0004211!7.75e-10!16;UBERON:0001285!7.75e-10!16;UBERON:0007684!7.75e-10!16;UBERON:0003220!7.75e-10!16;UBERON:0004208!7.75e-10!16;UBERON:0003886!9.24e-10!63;UBERON:0001046!1.30e-09!19;UBERON:0009773!1.63e-09!12;UBERON:0001231!1.63e-09!12;UBERON:0004810!1.63e-09!12;UBERON:0002107!5.92e-09!19;UBERON:0006925!5.92e-09!19;UBERON:0008836!5.92e-09!19;UBERON:0002294!9.65e-09!7;UBERON:0001173!9.65e-09!7;UBERON:0004912!9.65e-09!7;UBERON:0000464!2.07e-08!104;UBERON:0008947!2.29e-08!38;UBERON:0003258!2.29e-08!38;UBERON:0001225!3.20e-08!13;UBERON:0008987!3.20e-08!13;UBERON:0002553!4.10e-08!70;UBERON:0000065!5.92e-08!53;UBERON:0001048!7.65e-08!168;UBERON:0000062!7.67e-08!511;UBERON:0005256!2.81e-07!143;UBERON:0005156!3.47e-07!59;UBERON:0000990!3.47e-07!59;UBERON:0000059!7.44e-07!11;UBERON:0005057!7.92e-07!26 | |||
|ontology_enrichment_uberon_v019=UBERON:0002423;1.42e-18;25!UBERON:0006554;6.13e-18;30!UBERON:0001008;6.13e-18;30!UBERON:0001737;4.25e-16;9!UBERON:0001557;4.25e-16;9!UBERON:0005409;6.67e-16;22!UBERON:0000160;3.63e-13;17!UBERON:0005172;2.11e-12;52!UBERON:0005173;2.11e-12;52!UBERON:0002113;5.58e-12;24!UBERON:0011143;5.58e-12;24!UBERON:0004211;7.43e-12;10!UBERON:0009773;7.43e-12;10!UBERON:0001231;7.43e-12;10!UBERON:0004810;7.43e-12;10!UBERON:0000489;5.63e-11;29!UBERON:0002294;9.44e-11;7!UBERON:0001173;9.44e-11;7!UBERON:0000058;4.33e-10;10!UBERON:0002417;7.32e-10;58!UBERON:0000916;7.32e-10;58!UBERON:0002107;1.06e-09;19!UBERON:0006925;1.06e-09;19!UBERON:0006555;3.04e-09;15!UBERON:0004819;3.04e-09;15!UBERON:0001285;3.04e-09;15!UBERON:0007684;3.04e-09;15!UBERON:0004921;1.26e-08;33!UBERON:0002108;3.90e-08;4!UBERON:0000065;4.92e-08;44!UBERON:0004175;7.98e-08;21!UBERON:0003937;1.75e-07;12!UBERON:0005399;1.75e-07;12!UBERON:0005177;2.76e-07;99!UBERON:0003101;2.95e-07;22!UBERON:0000079;2.95e-07;22!UBERON:0006947;3.37e-07;3!UBERON:0004054;3.37e-07;3!UBERON:0001225;3.39e-07;12!UBERON:0008987;3.39e-07;12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,5.95e-29,160;UBERON:0000925,5.95e-29,160;UBERON:0006595,5.95e-29,160;UBERON:0004921,1.02e-28,118;UBERON:0001007,2.14e-24,145;UBERON:0001555,2.14e-24,145;UBERON:0007026,2.14e-24,145;UBERON:0001008,6.68e-24,48;UBERON:0005172,1.75e-23,54;UBERON:0005173,1.75e-23,54;UBERON:0006554,1.02e-22,47;UBERON:0002417,2.69e-20,60;UBERON:0000916,2.69e-20,60;UBERON:0009497,1.23e-18,25;UBERON:0000015,1.23e-18,25;UBERON:0002423,1.23e-18,25;UBERON:0006235,1.23e-18,25;UBERON:0004161,1.23e-18,25;UBERON:0005177,5.19e-18,101;UBERON:0009856,1.05e-17,26;UBERON:0005911,6.00e-17,82;UBERON:0007499,3.25e-16,25;UBERON:0001737,3.47e-16,9;UBERON:0009854,8.16e-16,23;UBERON:0002113,6.65e-15,26;UBERON:0003918,6.65e-15,26;UBERON:0011143,6.65e-15,26;UBERON:0005095,6.65e-15,26;UBERON:0007687,6.65e-15,26;UBERON:0003929,9.97e-15,54;UBERON:0008835,2.50e-14,22;UBERON:0003894,2.50e-14,22;UBERON:0001041,4.51e-14,87;UBERON:0000489,1.27e-13,31;UBERON:0005409,1.31e-13,25;UBERON:0000160,3.57e-13,17;UBERON:0009569,4.42e-12,112;UBERON:0004810,6.88e-12,10;UBERON:0003104,1.14e-11,160;UBERON:0009142,1.14e-11,160;UBERON:0006555,9.32e-11,16;UBERON:0004819,9.32e-11,16;UBERON:0001046,2.02e-10,19;UBERON:0002100,2.25e-10,199;UBERON:0011216,4.20e-10,223;UBERON:0002107,9.42e-10,19;UBERON:0006925,9.42e-10,19;UBERON:0008836,9.42e-10,19;UBERON:0004211,2.80e-09,15;UBERON:0009773,2.80e-09,15;UBERON:0001231,2.80e-09,15;UBERON:0001285,2.80e-09,15;UBERON:0007684,2.80e-09,15;UBERON:0004208,2.80e-09,15;UBERON:0005156,2.57e-08,59;UBERON:0000990,2.57e-08,59;UBERON:0002294,3.62e-08,9;UBERON:0001173,3.62e-08,9;UBERON:0004912,3.62e-08,9;UBERON:0002108,3.80e-08,4;UBERON:0000162,8.06e-08,14;UBERON:0001353,8.06e-08,14;UBERON:0000163,8.06e-08,14;UBERON:0006866,8.06e-08,14;UBERON:0000164,8.06e-08,14;UBERON:0000931,8.06e-08,14;UBERON:0008947,1.02e-07,38;UBERON:0003258,1.02e-07,38;UBERON:0003064,1.35e-07,28;UBERON:0003937,1.77e-07,12;UBERON:0005399,1.77e-07,12;UBERON:0000058,2.10e-07,19;UBERON:0003101,3.11e-07,22;UBERON:0000079,3.11e-07,22;UBERON:0001225,3.32e-07,12;UBERON:0008987,3.32e-07,12;UBERON:0004122,3.32e-07,15;UBERON:0006947,3.67e-07,3;UBERON:0004054,3.67e-07,3;UBERON:0000065,6.53e-07,54;UBERON:0001048,8.11e-07,160;UBERON:0001557,9.71e-07,19 | |||
|phase1_expression=0.181678379270557,0,0,0,0,0,0,0,0,2.45733936501509,0.697801167972428,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.382067028739756,0.57470412614962,0.236132343941038,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221729397462564,0,5.56661070865279,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.643240938192885,0,0,0,3.785817601275,5.73187946265546,4.57920956778616,5.5146986366197,4.57546832594053,4.74541238222193,3.91010793664477,2.5508790466295,4.23221872641029,0,0,0.4115740113314,0,27.8861076608028,5.89696330006576,17.1329072937607,0,12.6678091699407,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117141414992713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160853921143607,0,0,0,0,0,0,3.2632051389738,5.41367469818869,1.74953878978203,0,0,0,4.51199612907412,16.1732207919271,3.92174884588428,0,16.993812251753,0,0,2.59099099322567,0,2.43851793789468,0.501689773854853,7.13653564526107,3.3243040357149,4.92524460388792,0,0,0,0,0,23.0811866090898,0,0,0,0,0,0,0,0,0,0,0,0,0,4.62797763010739,2.11409074101617,2.80747967488085,0.50578890427775,0,0,0,0,0,0,0,0,0,0.632758849437452,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,21.747217979436,3.87454835404107,5.05414427002877,1.33029046061003,15.1617444136593,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.11134053551235,0,0,0,5.39858678932185,0,0,0,0,0,0,0,0,0,6.07824614168525,25.1932747854276,0,0,0,21.3886675730638,10.2042069565097,0,5.32674390439441,0,0,1.93866549219044,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110579259931225,0,0,0,0,2.00070672109872,0,0,0,0,0,0.366390373607449,0.533034776018635,0,0,0,0,0,0,0,0,20.8888083882747,29.2186726604874,0.565412285735763,0,14.9289289661776,27.7756752540485,22.6081153625441,0,0,0,0.067401132980677,0,0,0,0,0.485560759068186,5.12959723704208,9.67925728389311,0,0,0,0,0,0,0,0,16.507353669728,0,0.173559738335131,0,0,8.73633341210151,5.84752510403496,0,0,0,0,3.08896443420251,0,0,0,0,5.27988733383968,7.77540556439877,2.77488893161158,0,9.07769628070868,0,4.46146994441108,3.45731515171559,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199679000498991,0,0,0,0,9.31967596219631,6.30265458457789,4.86253564448882,5.45968705218898,17.7169466726548,0,0,0,0,0,0,0,0,0,0,37.9055452109143,16.7330136150644,0,0,0,0,0,0,0,0,0,0,0,0.170388021785422,0,22.2759395190685,10.6005511129777,0,0,4.44825778499256,0,2.56289790162467,2.20086027139532,0.414239055347196,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.380805212168795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.30617366729152,0,0,0,0,0,0,0,0,1.90180911022764,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.93320280562103,0,8.59665412356402,0,0,19.664859466867,0,0,0,0,0,0,0,0,0,0,0,0,0,0.266107110487916,0.115233987555779,0,0,0,18.674626859667,4.56048747757483,6.98588526369575,0,12.8925195124343,1.82631744101899,19.0016280272387,45.8641620371568,0,0,0,0,0,0,0,0,0,0,0,13.5483856061097,0,4.34288939930048,7.64431151181946,11.1855431797792,3.04265724207253,5.36438869921985,0,0,0,0,0,0,0,0,0,0,53.8675623593454,25.790028139467,0,0.980593287015622,0,0,0,0.4226557275834,0,0,0.322289439867886,0,0,0,0.481448200135009,10.9550458236978,0,0,0,0,0,23.2771809826776,0,0,0,0,0,0,0,0,0,0,1.74291005901951,0,0,0,0,0,0,0,0,0,0,0,0,0,1.72133292942423,0.332660356546013,0,0,0,13.473780315988,0,1.58913877437726,0.406896178315738,1.99727032255654,0,0 | |||
|short_description=p4@GRAMD3 | |||
}} |
Revision as of 07:09, 22 January 2014
Short description: | p4@GRAMD3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_GRAMD3_5end |
Coexpression cluster: | C4458_small_renal_kidney_Hepatocyte_clear_colon_argyrophil |
Association with transcript: | 0bp_to_ENST00000506445_5end |
EntrezGene: | GRAMD3 |
HGNC: | 24911 |
UniProt: | D6REP5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.90e-17 | 253 |
kidney cell | 1.39e-12 | 17 |
kidney epithelial cell | 1.39e-12 | 17 |
endodermal cell | 1.51e-12 | 58 |
kidney tubule cell | 6.88e-12 | 10 |
nephron tubule epithelial cell | 6.88e-12 | 10 |
hepatocyte | 1.38e-10 | 12 |
epithelial cell of nephron | 2.80e-09 | 15 |
transitional epithelial cell | 3.61e-08 | 4 |
urothelial cell | 3.61e-08 | 4 |
kidney cortical cell | 3.32e-07 | 12 |
renal cortical epithelial cell | 3.32e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.56e-20 | 106 |
cell type cancer | 4.89e-15 | 143 |
adenocarcinoma | 1.42e-11 | 25 |