FFCP PHASE1:Hg19::chr7:136553824..136553846,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=1129|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=1951|TSSclassifier=S|UniProt=P08172,A4D1Q0,Q6SL56,Q86SJ1,Q6SL59|association_with_transcript=0bp_to_ENST00000320658,ENST00000397608,ENST00000402486,ENST00000453373,ENST00000480591,ENST00000481598,NM_000739,NM_001006631,NM_001006632,uc003vth.1,uc003vti.1,uc003vtj.1,uc003vtk.1,uc003vtl.1,uc003vtm.1_5end|coexpression_cluster_id=C2880|description=CAGE_peak_2_at_CHRM2_5end|id=chr7:136553824..136553846,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:0002622;1.18e-09;3!CL:0002504;4.17e-09;3!CL:1000279;4.17e-09;3!CL:1000280;4.17e-09;3!CL:0002195;2.73e-07;2!CL:0002571;2.73e-07;2!CL:1000487;5.79e-07;2|ontology_enrichment_celltype_v019_2=CL:0002622,1.23e-09,3;CL:0002504,5.35e-09,3;CL:1000279,5.35e-09,3;CL:1000280,5.35e-09,3;CL:0002195,2.81e-07,2;CL:0002571,2.81e-07,2;CL:1000487,5.88e-07,2|ontology_enrichment_development_v019=UBERON:0005062;4.02e-12;4!UBERON:0007284;4.02e-12;4|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:114;3.51e-07;2!DOID:3307;7.09e-07;2|ontology_enrichment_disease_v019_2=DOID:114,3.46e-07,2;DOID:3307,6.60e-07,2|ontology_enrichment_uberon=UBERON:0007023!1.05e-21!115;UBERON:0001049!1.44e-19!57;UBERON:0005068!1.44e-19!57;UBERON:0006241!1.44e-19!57;UBERON:0007135!1.44e-19!57;UBERON:0002616!4.96e-16!59;UBERON:0002346!1.92e-14!90;UBERON:0002020!5.74e-14!34;UBERON:0003528!5.74e-14!34;UBERON:0000955!6.80e-14!69;UBERON:0006238!6.80e-14!69;UBERON:0003075!8.34e-14!86;UBERON:0007284!8.34e-14!86;UBERON:0002780!9.08e-14!41;UBERON:0001890!9.08e-14!41;UBERON:0006240!9.08e-14!41;UBERON:0001893!1.32e-13!34;UBERON:0003080!2.89e-13!42;UBERON:0002791!8.71e-13!33;UBERON:0001869!1.99e-12!32;UBERON:0005743!3.03e-12!86;UBERON:0001017!8.43e-12!82;UBERON:0000073!1.06e-11!94;UBERON:0001016!1.06e-11!94;UBERON:0001950!1.21e-10!20;UBERON:0002619!1.40e-10!22;UBERON:0000481!9.11e-10!347;UBERON:0000062!1.31e-09!511;UBERON:0000475!1.76e-09!365;UBERON:0000956!7.56e-09!25;UBERON:0000203!7.56e-09!25;UBERON:0004111!2.29e-08!241;UBERON:0003056!2.31e-08!61;UBERON:0000025!2.40e-08!194;UBERON:0000468!3.29e-08!659;UBERON:0003076!9.89e-08!15;UBERON:0003057!9.89e-08!15;UBERON:0000033!1.16e-07!123;UBERON:0000153!2.42e-07!129;UBERON:0007811!2.42e-07!129;UBERON:0002298!3.68e-07!8;UBERON:0002308!5.00e-07!9;UBERON:0000125!5.00e-07!9;UBERON:0000924!9.82e-07!173;UBERON:0006601!9.82e-07!173|ontology_enrichment_uberon_v019=UBERON:0000160;3.13e-16;17!UBERON:0005409;1.51e-14;22!UBERON:0000059;2.11e-11;11!UBERON:0001155;1.78e-10;9!UBERON:0004151;1.64e-09;3!UBERON:0003978;2.34e-09;3!UBERON:0000946;2.34e-09;3!UBERON:0002367;3.99e-09;11!UBERON:0010147;3.99e-09;11!UBERON:0004921;1.11e-08;33!UBERON:0003937;2.68e-08;12!UBERON:0005399;2.68e-08;12!UBERON:0007100;3.07e-08;25|ontology_enrichment_uberon_v019_2=UBERON:0000160,2.92e-16,17;UBERON:0001046,4.92e-13,19;UBERON:0005409,1.50e-12,25;UBERON:0000162,5.70e-12,14;UBERON:0001353,5.70e-12,14;UBERON:0000163,5.70e-12,14;UBERON:0006866,5.70e-12,14;UBERON:0000164,5.70e-12,14;UBERON:0000931,5.70e-12,14;UBERON:0000059,2.11e-11,11;UBERON:0004122,4.50e-11,15;UBERON:0001155,1.83e-10,9;UBERON:0004151,1.51e-09,3;UBERON:0003978,2.06e-09,3;UBERON:0009751,2.06e-09,3;UBERON:0000946,2.06e-09,3;UBERON:0002523,2.06e-09,3;UBERON:0005983,2.06e-09,3;UBERON:0002165,2.06e-09,3;UBERON:0002062,2.06e-09,3;UBERON:0007280,2.06e-09,3;UBERON:0002367,4.33e-09,11;UBERON:0010147,4.33e-09,11;UBERON:0009846,4.33e-09,11;UBERON:0003353,4.33e-09,11;UBERON:0004902,4.33e-09,11;UBERON:0003820,4.33e-09,11;UBERON:0009847,4.33e-09,11;UBERON:0004921,5.04e-09,118;UBERON:0001007,1.68e-08,145;UBERON:0001555,1.68e-08,145;UBERON:0007026,1.68e-08,145;UBERON:0003937,2.88e-08,12;UBERON:0005399,2.88e-08,12;UBERON:0007100,1.64e-07,27;UBERON:0003104,3.15e-07,160;UBERON:0009142,3.15e-07,160;UBERON:0003929,3.38e-07,54;UBERON:0011216,3.99e-07,223;UBERON:0004119,4.34e-07,160;UBERON:0000925,4.34e-07,160;UBERON:0006595,4.34e-07,160|phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,0,0,0,0,0,0.331397375727916,0,0,0,0,0.123121058076788,0.204000691244253,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132957960518865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286836620748814,0,0,0,0,0.311211035399766,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103325781175765,0,1.23633464639278,0,0,0,0,0.831192346452549,0.438977620880838,0,0,0,0,0,0.211931901159562,9.60291507470087,1.75189299705346,4.12224864073007,2.23340227597908,0.675105328965065,0.389748020644795,1.00973509697646,0.276149695926898,0,6.03516307278244,3.12331504505685,2.20428770003634,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,2.94017422771084,0,0,1.18157981336281,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=1129 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1951 | |||
|TSSclassifier=S | |||
|UniProt=P08172,A4D1Q0,Q6SL56,Q86SJ1,Q6SL59 | |||
|association_with_transcript=0bp_to_ENST00000320658,ENST00000397608,ENST00000402486,ENST00000453373,ENST00000480591,ENST00000481598,NM_000739,NM_001006631,NM_001006632,uc003vth.1,uc003vti.1,uc003vtj.1,uc003vtk.1,uc003vtl.1,uc003vtm.1_5end | |||
|coexpression_cluster_id=C2880 | |||
|description=CAGE_peak_2_at_CHRM2_5end | |||
|id=chr7:136553824..136553846,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002622;1.18e-09;3!CL:0002504;4.17e-09;3!CL:1000279;4.17e-09;3!CL:1000280;4.17e-09;3!CL:0002195;2.73e-07;2!CL:0002571;2.73e-07;2!CL:1000487;5.79e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002622,1.23e-09,3;CL:0002504,5.35e-09,3;CL:1000279,5.35e-09,3;CL:1000280,5.35e-09,3;CL:0002195,2.81e-07,2;CL:0002571,2.81e-07,2;CL:1000487,5.88e-07,2 | |||
|ontology_enrichment_development_v019=UBERON:0005062;4.02e-12;4!UBERON:0007284;4.02e-12;4 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:114;3.51e-07;2!DOID:3307;7.09e-07;2 | |||
|ontology_enrichment_disease_v019_2=DOID:114,3.46e-07,2;DOID:3307,6.60e-07,2 | |||
|ontology_enrichment_uberon=UBERON:0007023!1.05e-21!115;UBERON:0001049!1.44e-19!57;UBERON:0005068!1.44e-19!57;UBERON:0006241!1.44e-19!57;UBERON:0007135!1.44e-19!57;UBERON:0002616!4.96e-16!59;UBERON:0002346!1.92e-14!90;UBERON:0002020!5.74e-14!34;UBERON:0003528!5.74e-14!34;UBERON:0000955!6.80e-14!69;UBERON:0006238!6.80e-14!69;UBERON:0003075!8.34e-14!86;UBERON:0007284!8.34e-14!86;UBERON:0002780!9.08e-14!41;UBERON:0001890!9.08e-14!41;UBERON:0006240!9.08e-14!41;UBERON:0001893!1.32e-13!34;UBERON:0003080!2.89e-13!42;UBERON:0002791!8.71e-13!33;UBERON:0001869!1.99e-12!32;UBERON:0005743!3.03e-12!86;UBERON:0001017!8.43e-12!82;UBERON:0000073!1.06e-11!94;UBERON:0001016!1.06e-11!94;UBERON:0001950!1.21e-10!20;UBERON:0002619!1.40e-10!22;UBERON:0000481!9.11e-10!347;UBERON:0000062!1.31e-09!511;UBERON:0000475!1.76e-09!365;UBERON:0000956!7.56e-09!25;UBERON:0000203!7.56e-09!25;UBERON:0004111!2.29e-08!241;UBERON:0003056!2.31e-08!61;UBERON:0000025!2.40e-08!194;UBERON:0000468!3.29e-08!659;UBERON:0003076!9.89e-08!15;UBERON:0003057!9.89e-08!15;UBERON:0000033!1.16e-07!123;UBERON:0000153!2.42e-07!129;UBERON:0007811!2.42e-07!129;UBERON:0002298!3.68e-07!8;UBERON:0002308!5.00e-07!9;UBERON:0000125!5.00e-07!9;UBERON:0000924!9.82e-07!173;UBERON:0006601!9.82e-07!173 | |||
|ontology_enrichment_uberon_v019=UBERON:0000160;3.13e-16;17!UBERON:0005409;1.51e-14;22!UBERON:0000059;2.11e-11;11!UBERON:0001155;1.78e-10;9!UBERON:0004151;1.64e-09;3!UBERON:0003978;2.34e-09;3!UBERON:0000946;2.34e-09;3!UBERON:0002367;3.99e-09;11!UBERON:0010147;3.99e-09;11!UBERON:0004921;1.11e-08;33!UBERON:0003937;2.68e-08;12!UBERON:0005399;2.68e-08;12!UBERON:0007100;3.07e-08;25 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,2.92e-16,17;UBERON:0001046,4.92e-13,19;UBERON:0005409,1.50e-12,25;UBERON:0000162,5.70e-12,14;UBERON:0001353,5.70e-12,14;UBERON:0000163,5.70e-12,14;UBERON:0006866,5.70e-12,14;UBERON:0000164,5.70e-12,14;UBERON:0000931,5.70e-12,14;UBERON:0000059,2.11e-11,11;UBERON:0004122,4.50e-11,15;UBERON:0001155,1.83e-10,9;UBERON:0004151,1.51e-09,3;UBERON:0003978,2.06e-09,3;UBERON:0009751,2.06e-09,3;UBERON:0000946,2.06e-09,3;UBERON:0002523,2.06e-09,3;UBERON:0005983,2.06e-09,3;UBERON:0002165,2.06e-09,3;UBERON:0002062,2.06e-09,3;UBERON:0007280,2.06e-09,3;UBERON:0002367,4.33e-09,11;UBERON:0010147,4.33e-09,11;UBERON:0009846,4.33e-09,11;UBERON:0003353,4.33e-09,11;UBERON:0004902,4.33e-09,11;UBERON:0003820,4.33e-09,11;UBERON:0009847,4.33e-09,11;UBERON:0004921,5.04e-09,118;UBERON:0001007,1.68e-08,145;UBERON:0001555,1.68e-08,145;UBERON:0007026,1.68e-08,145;UBERON:0003937,2.88e-08,12;UBERON:0005399,2.88e-08,12;UBERON:0007100,1.64e-07,27;UBERON:0003104,3.15e-07,160;UBERON:0009142,3.15e-07,160;UBERON:0003929,3.38e-07,54;UBERON:0011216,3.99e-07,223;UBERON:0004119,4.34e-07,160;UBERON:0000925,4.34e-07,160;UBERON:0006595,4.34e-07,160 | |||
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|short_description=p2@CHRM2 | |||
}} |
Revision as of 23:25, 13 September 2013
Short description: | p2@CHRM2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_CHRM2_5end |
Coexpression cluster: | C2880_normal_sacrococcigeal_left_heart_stomach_Mesenchymal_smooth |
Association with transcript: | 0bp_to_ENST00000320658, ENST00000397608, ENST00000402486, ENST00000453373, ENST00000480591, ENST00000481598, NM_000739, NM_001006631, NM_001006632, uc003vth.1, uc003vti.1, uc003vtj.1, uc003vtk.1, uc003vtl.1, uc003vtm.1_5end |
EntrezGene: | CHRM2 |
HGNC: | 1951 |
UniProt: | P08172A4D1Q0Q6SL56Q86SJ1Q6SL59 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
prostate stromal cell | 1.23e-09 | 3 |
enteric smooth muscle cell | 5.35e-09 | 3 |
smooth muscle cell of large intestine | 5.35e-09 | 3 |
smooth muscle cell of colon | 5.35e-09 | 3 |
hepatic stem cell | 2.81e-07 | 2 |
hepatic mesenchymal stem cell | 2.81e-07 | 2 |
smooth muscle cell of prostate | 5.88e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
heart disease | 3.46e-07 | 2 |
teratoma | 6.60e-07 | 2 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.