FFCP PHASE1:Hg19::chr21:44589135..44589151,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=1409|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=2388|TSSclassifier=W|UniProt=P02489,Q53X53|association_with_transcript=0bp_to_NM_000394,uc002zdd.1_5end|coexpression_cluster_id=C40|description=CAGE_peak_1_at_CRYAA_5end|id=chr21:44589135..44589151,+|ontology_enrichment_celltype=CL:0002322!1.81e-22!5;CL:0000075!8.51e-12!27;CL:0000306!3.12e-11!4;CL:0002222!3.12e-11!4;CL:0002224!3.12e-11!4;CL:0000710!2.93e-07!20;CL:0000148!3.22e-07!10;CL:0000541!3.22e-07!10|ontology_enrichment_celltype_v019=CL:0000306;5.55e-33;4!CL:0002222;5.55e-33;4!CL:0002224;5.55e-33;4!CL:0002322;5.32e-26;5!CL:0000075;2.61e-13;27!CL:0002321;4.30e-09;15!CL:0002600;2.48e-08;2|ontology_enrichment_celltype_v019_2=CL:0000306,5.55e-33,4;CL:0002222,5.55e-33,4;CL:0002224,5.55e-33,4;CL:0002322,5.55e-26,5;CL:0000075,2.61e-13,27;CL:0002600,2.48e-08,2|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0010077!3.12e-11!4;UBERON:0005389!3.12e-11!4;UBERON:0000484!3.12e-11!4;UBERON:0002546!3.12e-11!4;UBERON:0000965!3.12e-11!4;UBERON:0001803!3.12e-11!4;UBERON:0003073!3.12e-11!4;UBERON:0005426!3.12e-11!4;UBERON:0003075!9.94e-08!86;UBERON:0007284!9.94e-08!86;UBERON:0000970!1.15e-07!20;UBERON:0002104!2.88e-07!21;UBERON:0002346!2.97e-07!90|ontology_enrichment_uberon_v019=UBERON:0010077;5.55e-33;4!UBERON:0005389;5.55e-33;4!UBERON:0000484;5.55e-33;4!UBERON:0000965;5.55e-33;4!UBERON:0001803;5.55e-33;4!UBERON:0002370;1.15e-28;2!UBERON:0005058;1.15e-28;2!UBERON:0009113;1.15e-28;2!UBERON:0000970;4.95e-18;20!UBERON:0002104;3.55e-17;21!UBERON:0000020;1.10e-15;23!UBERON:0001032;4.91e-15;24!UBERON:0004456;4.91e-15;24!UBERON:0007625;1.97e-12;11!UBERON:0000019;2.05e-12;19!UBERON:0000047;2.05e-12;19!UBERON:0004088;2.05e-12;19!UBERON:0010230;2.05e-12;19!UBERON:0004177;4.32e-12;5!UBERON:0005057;4.32e-12;5!UBERON:0001456;2.94e-11;21!UBERON:0001801;6.83e-10;14|ontology_enrichment_uberon_v019_2=UBERON:0010077,5.55e-33,4;UBERON:0005389,5.55e-33,4;UBERON:0000484,5.55e-33,4;UBERON:0002546,5.55e-33,4;UBERON:0000965,5.55e-33,4;UBERON:0001803,5.55e-33,4;UBERON:0003073,5.55e-33,4;UBERON:0005426,5.55e-33,4;UBERON:0000970,3.55e-17,21;UBERON:0002104,3.55e-17,21;UBERON:0000076,7.42e-17,8;UBERON:0000020,4.91e-15,24;UBERON:0001032,4.91e-15,24;UBERON:0004456,4.91e-15,24;UBERON:0002370,6.96e-15,4;UBERON:0005058,6.96e-15,4;UBERON:0009113,6.96e-15,4;UBERON:0003295,6.96e-15,4;UBERON:0005562,6.96e-15,4;UBERON:0007625,1.97e-12,11;UBERON:0000019,8.30e-12,20;UBERON:0000047,8.30e-12,20;UBERON:0010312,8.30e-12,20;UBERON:0004088,8.30e-12,20;UBERON:0010230,8.30e-12,20;UBERON:0003072,8.30e-12,20;UBERON:0004128,8.30e-12,20;UBERON:0003071,8.30e-12,20;UBERON:0001456,9.29e-11,22;UBERON:0003351,3.04e-10,6;UBERON:0001801,6.83e-10,14;UBERON:0004177,6.56e-09,7;UBERON:0005057,6.56e-09,7;UBERON:0000153,5.45e-08,62;UBERON:0007811,5.45e-08,62;UBERON:0005085,1.06e-07,31|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.313454721478088,0,0,0,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0,10.4128365020682,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.709336764396714,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.09776335516636,0.265059536642971,59.3751048063239,180.059252561698,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109750285408626,0,0,0,0,0,272.786236427766,7138.53061674533,139.833754834864,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102827492703324,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.59126326432643,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.296964680832639,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176915129006678,0,0,0,0,0.134802265961354,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821154570532092,0,0,10741.7685322618,0,0,0.0633107959558787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0,0,0,0,0,0,0,0,0,0.0787831823072236,0,0,0,0,0,0.408610218334727,0,0,0,0,0,0,0,729.346821054079,0.104909176269996,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146552233678082,0,0.129282956361551,0,0,0,0,0.157204305099666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110929051536852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=1409 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2388 | |||
|TSSclassifier=W | |||
|UniProt=P02489,Q53X53 | |||
|association_with_transcript=0bp_to_NM_000394,uc002zdd.1_5end | |||
|coexpression_cluster_id=C40 | |||
|description=CAGE_peak_1_at_CRYAA_5end | |||
|id=chr21:44589135..44589151,+ | |||
|ontology_enrichment_celltype=CL:0002322!1.81e-22!5;CL:0000075!8.51e-12!27;CL:0000306!3.12e-11!4;CL:0002222!3.12e-11!4;CL:0002224!3.12e-11!4;CL:0000710!2.93e-07!20;CL:0000148!3.22e-07!10;CL:0000541!3.22e-07!10 | |||
|ontology_enrichment_celltype_v019=CL:0000306;5.55e-33;4!CL:0002222;5.55e-33;4!CL:0002224;5.55e-33;4!CL:0002322;5.32e-26;5!CL:0000075;2.61e-13;27!CL:0002321;4.30e-09;15!CL:0002600;2.48e-08;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000306,5.55e-33,4;CL:0002222,5.55e-33,4;CL:0002224,5.55e-33,4;CL:0002322,5.55e-26,5;CL:0000075,2.61e-13,27;CL:0002600,2.48e-08,2 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0010077!3.12e-11!4;UBERON:0005389!3.12e-11!4;UBERON:0000484!3.12e-11!4;UBERON:0002546!3.12e-11!4;UBERON:0000965!3.12e-11!4;UBERON:0001803!3.12e-11!4;UBERON:0003073!3.12e-11!4;UBERON:0005426!3.12e-11!4;UBERON:0003075!9.94e-08!86;UBERON:0007284!9.94e-08!86;UBERON:0000970!1.15e-07!20;UBERON:0002104!2.88e-07!21;UBERON:0002346!2.97e-07!90 | |||
|ontology_enrichment_uberon_v019=UBERON:0010077;5.55e-33;4!UBERON:0005389;5.55e-33;4!UBERON:0000484;5.55e-33;4!UBERON:0000965;5.55e-33;4!UBERON:0001803;5.55e-33;4!UBERON:0002370;1.15e-28;2!UBERON:0005058;1.15e-28;2!UBERON:0009113;1.15e-28;2!UBERON:0000970;4.95e-18;20!UBERON:0002104;3.55e-17;21!UBERON:0000020;1.10e-15;23!UBERON:0001032;4.91e-15;24!UBERON:0004456;4.91e-15;24!UBERON:0007625;1.97e-12;11!UBERON:0000019;2.05e-12;19!UBERON:0000047;2.05e-12;19!UBERON:0004088;2.05e-12;19!UBERON:0010230;2.05e-12;19!UBERON:0004177;4.32e-12;5!UBERON:0005057;4.32e-12;5!UBERON:0001456;2.94e-11;21!UBERON:0001801;6.83e-10;14 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010077,5.55e-33,4;UBERON:0005389,5.55e-33,4;UBERON:0000484,5.55e-33,4;UBERON:0002546,5.55e-33,4;UBERON:0000965,5.55e-33,4;UBERON:0001803,5.55e-33,4;UBERON:0003073,5.55e-33,4;UBERON:0005426,5.55e-33,4;UBERON:0000970,3.55e-17,21;UBERON:0002104,3.55e-17,21;UBERON:0000076,7.42e-17,8;UBERON:0000020,4.91e-15,24;UBERON:0001032,4.91e-15,24;UBERON:0004456,4.91e-15,24;UBERON:0002370,6.96e-15,4;UBERON:0005058,6.96e-15,4;UBERON:0009113,6.96e-15,4;UBERON:0003295,6.96e-15,4;UBERON:0005562,6.96e-15,4;UBERON:0007625,1.97e-12,11;UBERON:0000019,8.30e-12,20;UBERON:0000047,8.30e-12,20;UBERON:0010312,8.30e-12,20;UBERON:0004088,8.30e-12,20;UBERON:0010230,8.30e-12,20;UBERON:0003072,8.30e-12,20;UBERON:0004128,8.30e-12,20;UBERON:0003071,8.30e-12,20;UBERON:0001456,9.29e-11,22;UBERON:0003351,3.04e-10,6;UBERON:0001801,6.83e-10,14;UBERON:0004177,6.56e-09,7;UBERON:0005057,6.56e-09,7;UBERON:0000153,5.45e-08,62;UBERON:0007811,5.45e-08,62;UBERON:0005085,1.06e-07,31 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.313454721478088,0,0,0,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0,10.4128365020682,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.709336764396714,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.09776335516636,0.265059536642971,59.3751048063239,180.059252561698,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109750285408626,0,0,0,0,0,272.786236427766,7138.53061674533,139.833754834864,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102827492703324,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.59126326432643,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.296964680832639,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176915129006678,0,0,0,0,0.134802265961354,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821154570532092,0,0,10741.7685322618,0,0,0.0633107959558787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0,0,0,0,0,0,0,0,0,0.0787831823072236,0,0,0,0,0,0.408610218334727,0,0,0,0,0,0,0,729.346821054079,0.104909176269996,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146552233678082,0,0.129282956361551,0,0,0,0,0.157204305099666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110929051536852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.622077260032973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161475645631851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126831620387814,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0657727735628491,0,0,0,0,0,0.913158720509496,0,0,70.6188256465365,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.231522474323834,0,0,0,0,0,0,0.4226557275834,0,0,0,0,0,0,0,0.730336388246517,0,0,0,0,0,0,0,0,0,0,5.13548188229369,0,0,0,0,0,0,0,0,0,0,0,2.26061184426021,1.48979314310059,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201273793591026,0 | |||
|short_description=p1@CRYAA | |||
}} |
Revision as of 10:34, 12 September 2013
Short description: | p1@CRYAA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_CRYAA_5end |
Coexpression cluster: | C40_eye_retina_Lens_pineal_tongue_retinoblastoma_small |
Association with transcript: | 0bp_to_NM_000394, uc002zdd.1_5end |
EntrezGene: | CRYAA |
HGNC: | 2388 |
UniProt: | P02489Q53X53 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
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Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
crystallin accumulating cell | 5.55e-33 | 4 |
vertebrate lens cell | 5.55e-33 | 4 |
lens epithelial cell | 5.55e-33 | 4 |
embryonic stem cell | 5.55e-26 | 5 |
columnar/cuboidal epithelial cell | 2.61e-13 | 27 |
smooth muscle cell of trachea | 2.48e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
cuboidal epithelium | 5.55e-33 | 4 |
transparent eye structure | 5.55e-33 | 4 |
simple cuboidal epithelium | 5.55e-33 | 4 |
cranial placode | 5.55e-33 | 4 |
lens of camera-type eye | 5.55e-33 | 4 |
epithelium of lens | 5.55e-33 | 4 |
lens placode | 5.55e-33 | 4 |
lens vesicle | 5.55e-33 | 4 |
eye | 3.55e-17 | 21 |
visual system | 3.55e-17 | 21 |
external ectoderm | 7.42e-17 | 8 |
sense organ | 4.91e-15 | 24 |
sensory system | 4.91e-15 | 24 |
entire sense organ system | 4.91e-15 | 24 |
thymus | 6.96e-15 | 4 |
hemolymphoid system gland | 6.96e-15 | 4 |
thymic region | 6.96e-15 | 4 |
pharyngeal gland | 6.96e-15 | 4 |
thymus primordium | 6.96e-15 | 4 |
pigment epithelium of eye | 1.97e-12 | 11 |
camera-type eye | 8.30e-12 | 20 |
simple eye | 8.30e-12 | 20 |
immature eye | 8.30e-12 | 20 |
ocular region | 8.30e-12 | 20 |
eyeball of camera-type eye | 8.30e-12 | 20 |
optic cup | 8.30e-12 | 20 |
optic vesicle | 8.30e-12 | 20 |
eye primordium | 8.30e-12 | 20 |
face | 9.29e-11 | 22 |
pharyngeal epithelium | 3.04e-10 | 6 |
anterior segment of eyeball | 6.83e-10 | 14 |
hemopoietic organ | 6.56e-09 | 7 |
immune organ | 6.56e-09 | 7 |
anterior region of body | 5.45e-08 | 62 |
craniocervical region | 5.45e-08 | 62 |
ectodermal placode | 1.06e-07 | 31 |
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