FFCP PHASE1:Hg19::chr17:42989067..42989111,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=2670|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=4235|TSSclassifier=W|UniProt=A1L194|association_with_transcript=-269bp_to_BC127871_5end|coexpression_cluster_id=C4|description=CAGE_peak_9_at_GFAP_5end|id=chr17:42989067..42989111,-|ontology_enrichment_celltype=CL:0002605!4.83e-10!3;CL:0000128!3.43e-07!7;CL:0000126!3.43e-07!7;CL:0000127!3.43e-07!7;CL:0002453!3.43e-07!7|ontology_enrichment_celltype_v019=CL:0002605;5.90e-13;3!CL:0000128;2.00e-09;7!CL:0000126;2.00e-09;7!CL:0000127;2.00e-09;7|ontology_enrichment_celltype_v019_2=CL:0002605,5.67e-13,3;CL:0000128,2.00e-09,7;CL:0000126,2.00e-09,7;CL:0000127,2.00e-09,7;CL:0002453,2.00e-09,7|ontology_enrichment_development_v019=UBERON:0006601;1.76e-19;82!UBERON:0006241;1.02e-13;3!UBERON:0003057;1.02e-13;3!UBERON:0010122;1.36e-08;2|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001049!1.65e-111!57;UBERON:0005068!1.65e-111!57;UBERON:0006241!1.65e-111!57;UBERON:0007135!1.65e-111!57;UBERON:0001017!2.22e-101!82;UBERON:0005743!3.87e-96!86;UBERON:0002616!8.46e-93!59;UBERON:0000073!1.38e-89!94;UBERON:0001016!1.38e-89!94;UBERON:0000955!5.51e-88!69;UBERON:0006238!5.51e-88!69;UBERON:0002780!9.58e-86!41;UBERON:0001890!9.58e-86!41;UBERON:0006240!9.58e-86!41;UBERON:0003080!1.65e-83!42;UBERON:0003075!1.73e-79!86;UBERON:0007284!1.73e-79!86;UBERON:0002020!1.54e-77!34;UBERON:0003528!1.54e-77!34;UBERON:0001893!5.62e-77!34;UBERON:0002346!2.08e-75!90;UBERON:0002791!1.59e-74!33;UBERON:0001869!2.49e-71!32;UBERON:0003056!8.41e-58!61;UBERON:0000956!3.39e-53!25;UBERON:0000203!3.39e-53!25;UBERON:0007023!5.46e-52!115;UBERON:0004121!8.87e-52!169;UBERON:0000033!6.51e-51!123;UBERON:0000924!2.85e-50!173;UBERON:0006601!2.85e-50!173;UBERON:0000153!5.18e-50!129;UBERON:0007811!5.18e-50!129;UBERON:0002619!6.52e-45!22;UBERON:0001950!1.34e-39!20;UBERON:0003076!2.32e-27!15;UBERON:0003057!2.32e-27!15;UBERON:0000025!1.04e-26!194;UBERON:0002308!1.68e-25!9;UBERON:0000125!1.68e-25!9;UBERON:0002420!5.00e-25!9;UBERON:0007245!5.00e-25!9;UBERON:0010009!5.00e-25!9;UBERON:0010011!5.00e-25!9;UBERON:0000454!5.00e-25!9;UBERON:0004732!8.23e-22!13;UBERON:0004111!4.85e-20!241;UBERON:0009663!9.18e-20!7;UBERON:0004733!4.43e-19!12;UBERON:0002028!4.43e-19!12;UBERON:0007277!4.43e-19!12;UBERON:0002298!1.59e-18!8;UBERON:0001871!8.82e-17!7;UBERON:0000200!9.68e-17!6;UBERON:0000477!1.05e-16!286;UBERON:0000483!3.46e-16!309;UBERON:0000119!6.65e-16!312;UBERON:0000064!3.15e-15!219;UBERON:0000349!1.15e-14!5;UBERON:0000475!3.06e-13!365;UBERON:0000369!1.49e-11!4;UBERON:0002435!1.49e-11!4;UBERON:0000204!1.49e-11!4;UBERON:0010082!1.49e-11!4;UBERON:0002680!2.46e-11!9;UBERON:0001895!2.46e-11!9;UBERON:0010092!2.46e-11!9;UBERON:0002240!1.35e-10!3;UBERON:0001896!1.95e-10!3;UBERON:0005290!1.95e-10!3;UBERON:0010096!1.95e-10!3;UBERON:0001894!2.15e-10!7;UBERON:0006222!2.15e-10!7;UBERON:0006331!3.69e-10!3;UBERON:0000988!6.12e-10!3;UBERON:0002021!1.41e-09!5;UBERON:0001872!2.02e-09!5;UBERON:0002771!2.70e-09!3;UBERON:0005383!3.12e-09!3;UBERON:0005382!3.12e-09!3;UBERON:0000062!3.31e-08!511;UBERON:0005162!1.84e-07!2;UBERON:0000122!1.84e-07!2;UBERON:0002148!1.90e-07!2;UBERON:0009662!1.90e-07!2;UBERON:0001897!2.50e-07!2;UBERON:0000481!3.13e-07!347;UBERON:0001875!3.19e-07!2;UBERON:0006514!3.19e-07!2;UBERON:0001954!4.57e-07!2;UBERON:0003022!4.57e-07!2;UBERON:0002421!4.57e-07!2;UBERON:0002600!4.57e-07!2;UBERON:0001876!5.96e-07!2;UBERON:0001873!8.71e-07!2;UBERON:0010122!8.71e-07!2|ontology_enrichment_uberon_v019=UBERON:0001893;5.24e-70;34!UBERON:0003528;1.65e-67;34!UBERON:0002020;1.65e-67;34!UBERON:0002791;5.53e-66;32!UBERON:0001869;9.52e-66;32!UBERON:0000073;9.50e-59;53!UBERON:0002616;9.50e-59;53!UBERON:0002780;4.55e-57;41!UBERON:0001890;4.55e-57;41!UBERON:0000956;2.28e-54;25!UBERON:0000203;2.28e-54;25!UBERON:0002619;7.82e-44;22!UBERON:0000955;2.26e-41;68!UBERON:0001017;2.01e-39;75!UBERON:0001950;3.94e-37;20!UBERON:0001016;1.12e-30;83!UBERON:0004732;2.62e-29;13!UBERON:0000125;4.25e-27;9!UBERON:0002308;4.25e-27;9!UBERON:0002420;1.90e-26;9!UBERON:0007245;1.90e-26;9!UBERON:0010009;1.90e-26;9!UBERON:0010011;1.90e-26;9!UBERON:0000454;1.90e-26;9!UBERON:0004733;1.31e-25;12!UBERON:0002028;1.31e-25;12!UBERON:0002298;1.34e-24;6!UBERON:0000200;5.40e-22;6!UBERON:0009663;1.54e-19;7!UBERON:0002680;3.92e-15;9!UBERON:0001895;3.92e-15;9!UBERON:0007023;9.09e-15;114!UBERON:0002240;1.02e-13;3!UBERON:0005174;1.02e-13;3!UBERON:0001137;1.02e-13;3!UBERON:0001896;1.82e-13;3!UBERON:0005290;1.82e-13;3!UBERON:0001871;2.37e-13;6!UBERON:0000988;6.78e-13;3!UBERON:0000349;7.59e-13;5!UBERON:0002021;1.74e-12;5!UBERON:0001872;2.54e-12;5!UBERON:0005383;7.50e-12;3!UBERON:0005382;7.50e-12;3!UBERON:0011216;9.31e-12;132!UBERON:0005162;1.60e-09;2!UBERON:0000122;1.60e-09;2!UBERON:0002148;1.67e-09;2!UBERON:0006331;1.67e-09;2!UBERON:0009662;1.67e-09;2!UBERON:0001897;2.41e-09;2!UBERON:0010225;2.41e-09;2!UBERON:0001875;3.76e-09;2!UBERON:0006514;3.76e-09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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=2670 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4235 | |||
|TSSclassifier=W | |||
|UniProt=A1L194 | |||
|association_with_transcript=-269bp_to_BC127871_5end | |||
|coexpression_cluster_id=C4 | |||
|description=CAGE_peak_9_at_GFAP_5end | |||
|id=chr17:42989067..42989111,- | |||
|ontology_enrichment_celltype=CL:0002605!4.83e-10!3;CL:0000128!3.43e-07!7;CL:0000126!3.43e-07!7;CL:0000127!3.43e-07!7;CL:0002453!3.43e-07!7 | |||
|ontology_enrichment_celltype_v019=CL:0002605;5.90e-13;3!CL:0000128;2.00e-09;7!CL:0000126;2.00e-09;7!CL:0000127;2.00e-09;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0002605,5.67e-13,3;CL:0000128,2.00e-09,7;CL:0000126,2.00e-09,7;CL:0000127,2.00e-09,7;CL:0002453,2.00e-09,7 | |||
|ontology_enrichment_development_v019=UBERON:0006601;1.76e-19;82!UBERON:0006241;1.02e-13;3!UBERON:0003057;1.02e-13;3!UBERON:0010122;1.36e-08;2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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|short_description=p9@GFAP | |||
}} |
Revision as of 13:59, 11 September 2013
Short description: | p9@GFAP |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_9_at_GFAP_5end |
Coexpression cluster: | C4_optic_corpus_substantia_medulla_spinal_thalamus_globus |
Association with transcript: | -269bp_to_BC127871_5end |
EntrezGene: | GFAP |
HGNC: | 4235 |
UniProt: | A1L194 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
astrocyte of the cerebral cortex | 5.67e-13 | 3 |
oligodendrocyte | 2.00e-09 | 7 |
macroglial cell | 2.00e-09 | 7 |
astrocyte | 2.00e-09 | 7 |
oligodendrocyte precursor cell | 2.00e-09 | 7 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.