FFCP PHASE1:Hg19::chr17:42988745..42988775,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=2670|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=4235|TSSclassifier=S|UniProt=A1L194|association_with_transcript=22bp_to_BC127871_5end|coexpression_cluster_id=C4|description=CAGE_peak_11_at_GFAP_5end|id=chr17:42988745..42988775,-|ontology_enrichment_celltype=CL:0000128!1.53e-08!7;CL:0000126!1.53e-08!7;CL:0000127!1.53e-08!7;CL:0002453!1.53e-08!7;CL:0002605!2.29e-08!3|ontology_enrichment_celltype_v019=CL:0002605;2.04e-13;3!CL:0000128;1.10e-09;7!CL:0000126;1.10e-09;7!CL:0000127;1.10e-09;7|ontology_enrichment_celltype_v019_2=CL:0002605,2.32e-13,3;CL:0000128,1.07e-09,7;CL:0000126,1.07e-09,7;CL:0000127,1.07e-09,7;CL:0002453,1.07e-09,7|ontology_enrichment_development_v019=UBERON:0006601;1.58e-17;82!UBERON:0006241;3.55e-14;3!UBERON:0003057;3.55e-14;3!UBERON:0006215;1.01e-12;3!UBERON:0010122;1.13e-09;2|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001049!1.32e-86!57;UBERON:0005068!1.32e-86!57;UBERON:0006241!1.32e-86!57;UBERON:0007135!1.32e-86!57;UBERON:0001017!1.32e-72!82;UBERON:0002616!1.41e-71!59;UBERON:0005743!3.72e-71!86;UBERON:0000073!1.70e-68!94;UBERON:0001016!1.70e-68!94;UBERON:0000955!1.06e-64!69;UBERON:0006238!1.06e-64!69;UBERON:0003075!2.42e-60!86;UBERON:0007284!2.42e-60!86;UBERON:0002780!2.55e-58!41;UBERON:0001890!2.55e-58!41;UBERON:0006240!2.55e-58!41;UBERON:0002346!4.94e-57!90;UBERON:0003080!1.03e-56!42;UBERON:0002020!2.79e-55!34;UBERON:0003528!2.79e-55!34;UBERON:0001893!6.74e-55!34;UBERON:0002791!5.84e-53!33;UBERON:0001869!2.96e-50!32;UBERON:0007023!1.72e-49!115;UBERON:0003056!1.30e-40!61;UBERON:0000033!6.40e-39!123;UBERON:0000153!1.85e-36!129;UBERON:0007811!1.85e-36!129;UBERON:0004121!8.93e-36!169;UBERON:0000956!1.25e-35!25;UBERON:0000203!1.25e-35!25;UBERON:0000924!1.37e-34!173;UBERON:0006601!1.37e-34!173;UBERON:0003076!2.37e-30!15;UBERON:0003057!2.37e-30!15;UBERON:0002619!2.96e-29!22;UBERON:0004732!1.28e-25!13;UBERON:0001950!3.20e-25!20;UBERON:0004733!2.81e-23!12;UBERON:0002028!2.81e-23!12;UBERON:0007277!2.81e-23!12;UBERON:0002308!1.53e-21!9;UBERON:0000125!1.53e-21!9;UBERON:0002420!5.36e-21!9;UBERON:0007245!5.36e-21!9;UBERON:0010009!5.36e-21!9;UBERON:0010011!5.36e-21!9;UBERON:0000454!5.36e-21!9;UBERON:0000025!7.97e-20!194;UBERON:0009663!7.16e-17!7;UBERON:0002680!2.70e-16!9;UBERON:0001895!2.70e-16!9;UBERON:0010092!2.70e-16!9;UBERON:0002298!1.85e-15!8;UBERON:0004111!7.68e-15!241;UBERON:0000064!2.49e-14!219;UBERON:0000200!5.24e-14!6;UBERON:0000477!4.43e-13!286;UBERON:0000349!5.05e-12!5;UBERON:0001871!1.67e-10!7;UBERON:0000483!2.27e-10!309;UBERON:0000369!2.99e-10!4;UBERON:0002435!2.99e-10!4;UBERON:0000204!2.99e-10!4;UBERON:0010082!2.99e-10!4;UBERON:0000119!3.88e-10!312;UBERON:0000475!6.86e-10!365;UBERON:0002037!8.85e-10!6;UBERON:0006215!8.85e-10!6;UBERON:0001896!7.95e-09!3;UBERON:0002240!7.95e-09!3;UBERON:0005290!7.95e-09!3;UBERON:0010096!7.95e-09!3;UBERON:0006331!1.10e-08!3;UBERON:0000988!2.03e-08!3;UBERON:0005174!2.51e-08!5;UBERON:0001137!2.51e-08!5;UBERON:0005383!2.53e-08!3;UBERON:0005382!2.53e-08!3;UBERON:0002771!4.94e-08!3;UBERON:0001872!1.01e-07!5;UBERON:0000062!6.43e-07!511|ontology_enrichment_uberon_v019=UBERON:0003528;1.10e-60;34!UBERON:0002020;1.10e-60;34!UBERON:0002791;2.92e-59;32!UBERON:0000073;6.54e-58;53!UBERON:0002616;6.54e-58;53!UBERON:0001893;1.04e-57;34!UBERON:0001869;1.68e-53;32!UBERON:0002780;5.07e-49;41!UBERON:0001890;5.07e-49;41!UBERON:0000956;7.68e-46;25!UBERON:0000203;7.68e-46;25!UBERON:0001017;2.67e-38;75!UBERON:0000955;9.48e-38;68!UBERON:0004732;2.60e-37;13!UBERON:0002619;1.62e-35;22!UBERON:0004733;2.71e-33;12!UBERON:0002028;2.71e-33;12!UBERON:0001016;9.45e-31;83!UBERON:0001950;3.96e-29;20!UBERON:0000125;4.32e-29;9!UBERON:0002308;4.32e-29;9!UBERON:0002420;3.20e-28;9!UBERON:0007245;3.20e-28;9!UBERON:0010009;3.20e-28;9!UBERON:0010011;3.20e-28;9!UBERON:0000454;3.20e-28;9!UBERON:0002298;6.61e-26;6!UBERON:0002680;1.63e-21;9!UBERON:0001895;1.63e-21;9!UBERON:0009663;3.63e-21;7!UBERON:0000200;1.91e-16;6!UBERON:0007023;1.09e-14;114!UBERON:0001896;3.55e-14;3!UBERON:0002240;3.55e-14;3!UBERON:0005174;3.55e-14;3!UBERON:0005290;3.55e-14;3!UBERON:0001137;3.55e-14;3!UBERON:0001871;5.65e-14;6!UBERON:0000988;1.69e-13;3!UBERON:0005383;2.47e-13;3!UBERON:0005382;2.47e-13;3!UBERON:0000349;4.70e-13;5!UBERON:0011216;2.60e-11;132!UBERON:0002037;7.68e-11;6!UBERON:0000369;4.09e-10;4!UBERON:0002435;4.09e-10;4!UBERON:0000204;4.09e-10;4!UBERON:0005162;5.93e-10;2!UBERON:0000122;5.93e-10;2!UBERON:0002148;7.69e-10;2!UBERON:0006331;7.69e-10;2!UBERON:0009662;7.69e-10;2!UBERON:0001873;1.13e-09;2!UBERON:0001897;2.48e-09;2!UBERON:0010225;2.48e-09;2!UBERON:0002702;3.61e-09;2!UBERON:0001954;3.84e-09;2!UBERON:0001875;3.84e-09;2!UBERON:0003022;3.84e-09;2!UBERON:0002421;3.84e-09;2!UBERON:0006514;3.84e-09;2!UBERON:0002600;3.84e-09;2!UBERON:0002771;7.55e-09;2!UBERON:0001876;7.55e-09;2!UBERON:0010314;6.12e-08;132!UBERON:0002021;8.94e-08;5!UBERON:0001872;1.15e-07;5|ont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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=2670 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4235 | |||
|TSSclassifier=S | |||
|UniProt=A1L194 | |||
|association_with_transcript=22bp_to_BC127871_5end | |||
|coexpression_cluster_id=C4 | |||
|description=CAGE_peak_11_at_GFAP_5end | |||
|id=chr17:42988745..42988775,- | |||
|ontology_enrichment_celltype=CL:0000128!1.53e-08!7;CL:0000126!1.53e-08!7;CL:0000127!1.53e-08!7;CL:0002453!1.53e-08!7;CL:0002605!2.29e-08!3 | |||
|ontology_enrichment_celltype_v019=CL:0002605;2.04e-13;3!CL:0000128;1.10e-09;7!CL:0000126;1.10e-09;7!CL:0000127;1.10e-09;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0002605,2.32e-13,3;CL:0000128,1.07e-09,7;CL:0000126,1.07e-09,7;CL:0000127,1.07e-09,7;CL:0002453,1.07e-09,7 | |||
|ontology_enrichment_development_v019=UBERON:0006601;1.58e-17;82!UBERON:0006241;3.55e-14;3!UBERON:0003057;3.55e-14;3!UBERON:0006215;1.01e-12;3!UBERON:0010122;1.13e-09;2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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|short_description=p11@GFAP | |||
}} |
Revision as of 13:59, 11 September 2013
Short description: | p11@GFAP |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_11_at_GFAP_5end |
Coexpression cluster: | C4_optic_corpus_substantia_medulla_spinal_thalamus_globus |
Association with transcript: | 22bp_to_BC127871_5end |
EntrezGene: | GFAP |
HGNC: | 4235 |
UniProt: | A1L194 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
astrocyte of the cerebral cortex | 2.32e-13 | 3 |
oligodendrocyte | 1.07e-09 | 7 |
macroglial cell | 1.07e-09 | 7 |
astrocyte | 1.07e-09 | 7 |
oligodendrocyte precursor cell | 1.07e-09 | 7 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.