FFCP PHASE1:Hg19::chr16:61687533..61687551,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C1044|description=CAGE_peak_at_chr16:61687533..61687551,-|id=chr16:61687533..61687551,-|ontology_enrichment_celltype=CL:0002583!2.07e-10!2;CL:0000239!1.82e-07!3;CL:1000615!1.82e-07!3;CL:0002306!1.82e-07!3|ontology_enrichment_celltype_v019=CL:0000239;2.39e-66;3!CL:1000615;2.39e-66;3!CL:0002306;2.39e-66;3!CL:1000507;3.81e-21;10!CL:1000494;3.81e-21;10!CL:0002681;6.76e-18;12!CL:0002584;6.76e-18;12!CL:1000449;1.22e-14;15!CL:1000497;4.22e-13;17!CL:0002518;4.22e-13;17!CL:0000075;8.32e-09;27!CL:0002078;4.53e-08;45|ontology_enrichment_celltype_v019_2=CL:0000239,2.39e-66,3;CL:1000615,2.39e-66,3;CL:0002306,2.39e-66,3;CL:1000507,3.81e-21,10;CL:1000494,3.81e-21,10;CL:0002681,6.76e-18,12;CL:0002584,6.76e-18,12;CL:1000449,1.22e-14,15;CL:1000497,4.22e-13,17;CL:0002518,4.22e-13,17;CL:0000075,8.32e-09,27|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:3307!1.57e-10!2|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001871!5.91e-21!7;UBERON:0003112!2.25e-19!1;UBERON:0000032!2.25e-19!1;UBERON:0005253!2.25e-19!1;UBERON:0003128!2.25e-19!1;UBERON:0002241!2.25e-19!1;UBERON:0001703!2.25e-19!1;UBERON:0004761!2.25e-19!1;UBERON:0009617!2.25e-19!1;UBERON:0001874!2.71e-19!1;UBERON:0001950!4.76e-14!20;UBERON:0001869!1.03e-13!32;UBERON:0002791!2.59e-13!33;UBERON:0002020!6.18e-13!34;UBERON:0003528!6.18e-13!34;UBERON:0001893!6.18e-13!34;UBERON:0002619!7.36e-13!22;UBERON:0000955!4.53e-12!69;UBERON:0006238!4.53e-12!69;UBERON:0000956!2.04e-11!25;UBERON:0000203!2.04e-11!25;UBERON:0001049!5.06e-11!57;UBERON:0005068!5.06e-11!57;UBERON:0006241!5.06e-11!57;UBERON:0007135!5.06e-11!57;UBERON:0002780!8.54e-11!41;UBERON:0001890!8.54e-11!41;UBERON:0006240!8.54e-11!41;UBERON:0002616!1.19e-10!59;UBERON:0003080!1.52e-10!42;UBERON:0001017!3.77e-10!82;UBERON:0005743!1.13e-09!86;UBERON:0000073!9.69e-09!94;UBERON:0001016!9.69e-09!94;UBERON:0000033!1.02e-08!123;UBERON:0000153!2.71e-08!129;UBERON:0007811!2.71e-08!129;UBERON:0006853!1.82e-07!3;UBERON:0007685!1.82e-07!3;UBERON:0004134!1.82e-07!3;UBERON:0002771!2.05e-07!3;UBERON:0003056!2.53e-07!61;UBERON:0005383!2.63e-07!3;UBERON:0005382!2.63e-07!3;UBERON:0007023!2.67e-07!115;UBERON:0003075!2.76e-07!86;UBERON:0007284!2.76e-07!86;UBERON:0000988!2.79e-07!3;UBERON:0002346!5.91e-07!90|ontology_enrichment_uberon_v019=UBERON:0006853;2.39e-66;3!UBERON:0007685;2.39e-66;3!UBERON:0004134;2.39e-66;3!UBERON:0004211;3.81e-21;10!UBERON:0009773;3.81e-21;10!UBERON:0001231;3.81e-21;10!UBERON:0004810;3.81e-21;10!UBERON:0001225;6.76e-18;12!UBERON:0008987;6.76e-18;12!UBERON:0001851;1.22e-14;15!UBERON:0006555;1.22e-14;15!UBERON:0000353;1.22e-14;15!UBERON:0004819;1.22e-14;15!UBERON:0001285;1.22e-14;15!UBERON:0007684;1.22e-14;15!UBERON:0002113;1.01e-09;24!UBERON:0011143;1.01e-09;24!UBERON:0000489;2.67e-08;29!UBERON:0006554;4.53e-08;30!UBERON:0001008;4.53e-08;30|ontology_enrichment_uberon_v019_2=UBERON:0006853,2.39e-66,3;UBERON:0007685,2.39e-66,3;UBERON:0004134,2.39e-66,3;UBERON:0004810,3.81e-21,10;UBERON:0001225,6.76e-18,12;UBERON:0008987,6.76e-18,12;UBERON:0001851,1.22e-14,15;UBERON:0004211,1.22e-14,15;UBERON:0009773,1.22e-14,15;UBERON:0000353,1.22e-14,15;UBERON:0001231,1.22e-14,15;UBERON:0001285,1.22e-14,15;UBERON:0007684,1.22e-14,15;UBERON:0004208,1.22e-14,15;UBERON:0006555,8.02e-14,16;UBERON:0004819,8.02e-14,16;UBERON:0002113,4.34e-09,26;UBERON:0003918,4.34e-09,26;UBERON:0011143,4.34e-09,26;UBERON:0005095,4.34e-09,26;UBERON:0007687,4.34e-09,26;UBERON:0000489,7.41e-08,31|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.177561725313127,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,29.0876603125053,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30607276163049,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.610131324509816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161475645631851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0634158101939068,0,0,0,0,0,0,0,0,0,0,0,0,0.135939465953663,0,0,0,0,0.157115589916002,0,0,0,0,0,0,0,0,0.801711364730253,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0679914901909147,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p@chr16:61687533..61687551,-}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C1044 | |||
|description=CAGE_peak_at_chr16:61687533..61687551,- | |||
|id=chr16:61687533..61687551,- | |||
|ontology_enrichment_celltype=CL:0002583!2.07e-10!2;CL:0000239!1.82e-07!3;CL:1000615!1.82e-07!3;CL:0002306!1.82e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0000239;2.39e-66;3!CL:1000615;2.39e-66;3!CL:0002306;2.39e-66;3!CL:1000507;3.81e-21;10!CL:1000494;3.81e-21;10!CL:0002681;6.76e-18;12!CL:0002584;6.76e-18;12!CL:1000449;1.22e-14;15!CL:1000497;4.22e-13;17!CL:0002518;4.22e-13;17!CL:0000075;8.32e-09;27!CL:0002078;4.53e-08;45 | |||
|ontology_enrichment_celltype_v019_2=CL:0000239,2.39e-66,3;CL:1000615,2.39e-66,3;CL:0002306,2.39e-66,3;CL:1000507,3.81e-21,10;CL:1000494,3.81e-21,10;CL:0002681,6.76e-18,12;CL:0002584,6.76e-18,12;CL:1000449,1.22e-14,15;CL:1000497,4.22e-13,17;CL:0002518,4.22e-13,17;CL:0000075,8.32e-09,27 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:3307!1.57e-10!2 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001871!5.91e-21!7;UBERON:0003112!2.25e-19!1;UBERON:0000032!2.25e-19!1;UBERON:0005253!2.25e-19!1;UBERON:0003128!2.25e-19!1;UBERON:0002241!2.25e-19!1;UBERON:0001703!2.25e-19!1;UBERON:0004761!2.25e-19!1;UBERON:0009617!2.25e-19!1;UBERON:0001874!2.71e-19!1;UBERON:0001950!4.76e-14!20;UBERON:0001869!1.03e-13!32;UBERON:0002791!2.59e-13!33;UBERON:0002020!6.18e-13!34;UBERON:0003528!6.18e-13!34;UBERON:0001893!6.18e-13!34;UBERON:0002619!7.36e-13!22;UBERON:0000955!4.53e-12!69;UBERON:0006238!4.53e-12!69;UBERON:0000956!2.04e-11!25;UBERON:0000203!2.04e-11!25;UBERON:0001049!5.06e-11!57;UBERON:0005068!5.06e-11!57;UBERON:0006241!5.06e-11!57;UBERON:0007135!5.06e-11!57;UBERON:0002780!8.54e-11!41;UBERON:0001890!8.54e-11!41;UBERON:0006240!8.54e-11!41;UBERON:0002616!1.19e-10!59;UBERON:0003080!1.52e-10!42;UBERON:0001017!3.77e-10!82;UBERON:0005743!1.13e-09!86;UBERON:0000073!9.69e-09!94;UBERON:0001016!9.69e-09!94;UBERON:0000033!1.02e-08!123;UBERON:0000153!2.71e-08!129;UBERON:0007811!2.71e-08!129;UBERON:0006853!1.82e-07!3;UBERON:0007685!1.82e-07!3;UBERON:0004134!1.82e-07!3;UBERON:0002771!2.05e-07!3;UBERON:0003056!2.53e-07!61;UBERON:0005383!2.63e-07!3;UBERON:0005382!2.63e-07!3;UBERON:0007023!2.67e-07!115;UBERON:0003075!2.76e-07!86;UBERON:0007284!2.76e-07!86;UBERON:0000988!2.79e-07!3;UBERON:0002346!5.91e-07!90 | |||
|ontology_enrichment_uberon_v019=UBERON:0006853;2.39e-66;3!UBERON:0007685;2.39e-66;3!UBERON:0004134;2.39e-66;3!UBERON:0004211;3.81e-21;10!UBERON:0009773;3.81e-21;10!UBERON:0001231;3.81e-21;10!UBERON:0004810;3.81e-21;10!UBERON:0001225;6.76e-18;12!UBERON:0008987;6.76e-18;12!UBERON:0001851;1.22e-14;15!UBERON:0006555;1.22e-14;15!UBERON:0000353;1.22e-14;15!UBERON:0004819;1.22e-14;15!UBERON:0001285;1.22e-14;15!UBERON:0007684;1.22e-14;15!UBERON:0002113;1.01e-09;24!UBERON:0011143;1.01e-09;24!UBERON:0000489;2.67e-08;29!UBERON:0006554;4.53e-08;30!UBERON:0001008;4.53e-08;30 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0006853,2.39e-66,3;UBERON:0007685,2.39e-66,3;UBERON:0004134,2.39e-66,3;UBERON:0004810,3.81e-21,10;UBERON:0001225,6.76e-18,12;UBERON:0008987,6.76e-18,12;UBERON:0001851,1.22e-14,15;UBERON:0004211,1.22e-14,15;UBERON:0009773,1.22e-14,15;UBERON:0000353,1.22e-14,15;UBERON:0001231,1.22e-14,15;UBERON:0001285,1.22e-14,15;UBERON:0007684,1.22e-14,15;UBERON:0004208,1.22e-14,15;UBERON:0006555,8.02e-14,16;UBERON:0004819,8.02e-14,16;UBERON:0002113,4.34e-09,26;UBERON:0003918,4.34e-09,26;UBERON:0011143,4.34e-09,26;UBERON:0005095,4.34e-09,26;UBERON:0007687,4.34e-09,26;UBERON:0000489,7.41e-08,31 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.177561725313127,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,29.0876603125053,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30607276163049,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.610131324509816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161475645631851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0634158101939068,0,0,0,0,0,0,0,0,0,0,0,0,0.135939465953663,0,0,0,0,0.157115589916002,0,0,0,0,0,0,0,0,0.801711364730253,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0679914901909147,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr16:61687533..61687551,- | |||
}} |
Revision as of 11:01, 11 September 2013
Short description: | p@chr16:61687533..61687551, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr16:61687533..61687551, - |
Coexpression cluster: | C1044_Renal_amniotic_Mammary_chorionic_bile_prostate_Amniotic |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
brush border epithelial cell | 2.39e-66 | 3 |
kidney cortex tubule cell | 2.39e-66 | 3 |
epithelial cell of proximal tubule | 2.39e-66 | 3 |
kidney tubule cell | 3.81e-21 | 10 |
nephron tubule epithelial cell | 3.81e-21 | 10 |
kidney cortical cell | 6.76e-18 | 12 |
renal cortical epithelial cell | 6.76e-18 | 12 |
epithelial cell of nephron | 1.22e-14 | 15 |
kidney cell | 4.22e-13 | 17 |
kidney epithelial cell | 4.22e-13 | 17 |
columnar/cuboidal epithelial cell | 8.32e-09 | 27 |
Ontology term | p-value | n |
---|---|---|
renal cortex tubule | 2.39e-66 | 3 |
region of nephron tubule | 2.39e-66 | 3 |
proximal tubule | 2.39e-66 | 3 |
nephron tubule epithelium | 3.81e-21 | 10 |
cortex of kidney | 6.76e-18 | 12 |
renal parenchyma | 6.76e-18 | 12 |
cortex | 1.22e-14 | 15 |
nephron epithelium | 1.22e-14 | 15 |
renal tubule | 1.22e-14 | 15 |
parenchyma | 1.22e-14 | 15 |
nephron tubule | 1.22e-14 | 15 |
nephron | 1.22e-14 | 15 |
uriniferous tubule | 1.22e-14 | 15 |
nephrogenic mesenchyme | 1.22e-14 | 15 |
excretory tube | 8.02e-14 | 16 |
kidney epithelium | 8.02e-14 | 16 |
kidney | 4.34e-09 | 26 |
kidney mesenchyme | 4.34e-09 | 26 |
upper urinary tract | 4.34e-09 | 26 |
kidney rudiment | 4.34e-09 | 26 |
kidney field | 4.34e-09 | 26 |
cavitated compound organ | 7.41e-08 | 31 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.