MCL coexpression mm9:14: Difference between revisions
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|ontology_enrichment_uberon=UBERON:0005418!4.63e-10!5;UBERON:0002472!4.63e-10!5;UBERON:0008784!4.63e-10!5;UBERON:0006058!4.63e-10!5;UBERON:0004709!4.63e-10!5;UBERON:0002529!4.63e-10!5;UBERON:0010538!4.63e-10!5;UBERON:0005420!4.63e-10!5;UBERON:0010758!4.63e-10!5;UBERON:0000978!4.63e-10!5;UBERON:0002103!4.63e-10!5;UBERON:0000376!4.63e-10!5;UBERON:0000154!4.63e-10!5;UBERON:0010709!4.63e-10!5;UBERON:0005730!4.63e-10!5;UBERON:0000981!2.73e-08!4;UBERON:0003608!2.73e-08!4;UBERON:0003826!2.73e-08!4;UBERON:0008202!2.73e-08!4;UBERON:0004381!2.73e-08!4;UBERON:0007273!2.73e-08!4;UBERON:0010912!2.73e-08!4;UBERON:0002513!2.73e-08!4;UBERON:0004375!2.73e-08!4;UBERON:0010740!2.73e-08!4;UBERON:0010363!2.73e-08!4;UBERON:0003860!2.73e-08!4;UBERON:0002428!2.73e-08!4;UBERON:0010742!2.73e-08!4;UBERON:0002495!2.73e-08!4;UBERON:0003464!2.73e-08!4;UBERON:0003606!2.73e-08!4;UBERON:0005893!2.73e-08!4;UBERON:0009749!2.73e-08!4;UBERON:0010712!2.73e-08!4;UBERON:0010886!2.73e-08!4;UBERON:0005254!2.73e-08!4;UBERON:0010885!2.73e-08!4;UBERON:0010881!2.73e-08!4;UBERON:0010882!2.73e-08!4;UBERON:0007844!2.73e-08!4;UBERON:0001441!2.73e-08!4;UBERON:0011249!2.73e-08!4;UBERON:0002091!2.73e-08!4;UBERON:0003285!2.73e-08!4;UBERON:0004288!2.73e-08!4;UBERON:0010129!2.73e-08!4;UBERON:0006234!2.73e-08!4;UBERON:0003102!2.94e-07!22;UBERON:0000014!3.67e-07!5;UBERON:0001003!3.67e-07!5;UBERON:0002097!3.67e-07!5;UBERON:0002199!3.67e-07!5;UBERON:0007029!3.67e-07!5;UBERON:0007376!3.67e-07!5;UBERON:0002416!3.67e-07!5;UBERON:0007383!3.67e-07!5 | |ontology_enrichment_uberon=UBERON:0005418!4.63e-10!5;UBERON:0002472!4.63e-10!5;UBERON:0008784!4.63e-10!5;UBERON:0006058!4.63e-10!5;UBERON:0004709!4.63e-10!5;UBERON:0002529!4.63e-10!5;UBERON:0010538!4.63e-10!5;UBERON:0005420!4.63e-10!5;UBERON:0010758!4.63e-10!5;UBERON:0000978!4.63e-10!5;UBERON:0002103!4.63e-10!5;UBERON:0000376!4.63e-10!5;UBERON:0000154!4.63e-10!5;UBERON:0010709!4.63e-10!5;UBERON:0005730!4.63e-10!5;UBERON:0000981!2.73e-08!4;UBERON:0003608!2.73e-08!4;UBERON:0003826!2.73e-08!4;UBERON:0008202!2.73e-08!4;UBERON:0004381!2.73e-08!4;UBERON:0007273!2.73e-08!4;UBERON:0010912!2.73e-08!4;UBERON:0002513!2.73e-08!4;UBERON:0004375!2.73e-08!4;UBERON:0010740!2.73e-08!4;UBERON:0010363!2.73e-08!4;UBERON:0003860!2.73e-08!4;UBERON:0002428!2.73e-08!4;UBERON:0010742!2.73e-08!4;UBERON:0002495!2.73e-08!4;UBERON:0003464!2.73e-08!4;UBERON:0003606!2.73e-08!4;UBERON:0005893!2.73e-08!4;UBERON:0009749!2.73e-08!4;UBERON:0010712!2.73e-08!4;UBERON:0010886!2.73e-08!4;UBERON:0005254!2.73e-08!4;UBERON:0010885!2.73e-08!4;UBERON:0010881!2.73e-08!4;UBERON:0010882!2.73e-08!4;UBERON:0007844!2.73e-08!4;UBERON:0001441!2.73e-08!4;UBERON:0011249!2.73e-08!4;UBERON:0002091!2.73e-08!4;UBERON:0003285!2.73e-08!4;UBERON:0004288!2.73e-08!4;UBERON:0010129!2.73e-08!4;UBERON:0006234!2.73e-08!4;UBERON:0003102!2.94e-07!22;UBERON:0000014!3.67e-07!5;UBERON:0001003!3.67e-07!5;UBERON:0002097!3.67e-07!5;UBERON:0002199!3.67e-07!5;UBERON:0007029!3.67e-07!5;UBERON:0007376!3.67e-07!5;UBERON:0002416!3.67e-07!5;UBERON:0007383!3.67e-07!5 | ||
|tfbs_overrepresentation_for_novel_motifs=0.0350664,0.875004,0.0283022,0.486526,2.2334,0.351657,0.182663,3.83294,0.267179,0.000125235,0.0152599,0.743069,0.00541176,0.0200916,0.472504,0,0.00517513,3.44751,3.24601,1.3762,1.09849,1.48609,0.182524,0.0304804,0.362659,0.309994,1.4337,0.146644,0.0247741,3.18717,0.00277134,2.61829,0.41884,1.42109,0.0417662,0.635389,2.41082e-16,0.207404,1.43837,0.00141742,0.0779057,0.596237,4.96989,2.02508,1.31449,0.000135458,0.148706,0.0821484,0.773767,1.0057,0.377583,0.0858019,1.20781,0.122278,1.43353,0.0732866,3.18375,0.0294483,2.74882,0.0096719,0.188893,0.0363096,2.22029,0.0165365,0.00933809,0.138732,0.0618409,0.0166283,0.0814025,0.0243849,5.13851e-07,1.30199,2.41082e-16,0.0747698,1.45194e-12,0.195719,1.93498,0.120669,2.34607,2.75104,2.21532,0.00171266,0.291197,0.518284,0.000577408,0,7.36334e-07,0.476902,0.00107543,1.10964,0.347984,0.15036,0.0574074,3.34026,0.000744343,2.28866,0.503692,0.78015,0.0350251,0.180313,1.65864,0.3268,0.603074,0.122978,0.0839938,3.69987e-06,0.0711401,0.288793,0.0139053,0.000191464,0.410307,0.162148,1.20927,0.0715647,0.364565,1.36897,2.78414e-08,0.522671,0.0192565,0.777807,0.455336,0.703769,1.74999,0.159928,0.193528,0.909637,0.132818,0.0837299,1.98014,2.72301,0.287706,0.114931,0.534481,2.14025,0.609098,0.00240589,0.498161,0.040252,0.100277,0.210691,0.0404337,0.88636,0.387987,0.366839,0.648156,0.600898,0.339187,1.04896,0.522636,0.00995772,0.317205,0,2.41321,0.0290645,0.483323,0.0266177,1.03281,1.21469,1.47903,0.000102895,1.17052,1.68732,0.298593,0.287357,1.36547,0.146669,0.170261,1.62265,0.0137787 | |tfbs_overrepresentation_for_novel_motifs=0.0350664,0.875004,0.0283022,0.486526,2.2334,0.351657,0.182663,3.83294,0.267179,0.000125235,0.0152599,0.743069,0.00541176,0.0200916,0.472504,0,0.00517513,3.44751,3.24601,1.3762,1.09849,1.48609,0.182524,0.0304804,0.362659,0.309994,1.4337,0.146644,0.0247741,3.18717,0.00277134,2.61829,0.41884,1.42109,0.0417662,0.635389,2.41082e-16,0.207404,1.43837,0.00141742,0.0779057,0.596237,4.96989,2.02508,1.31449,0.000135458,0.148706,0.0821484,0.773767,1.0057,0.377583,0.0858019,1.20781,0.122278,1.43353,0.0732866,3.18375,0.0294483,2.74882,0.0096719,0.188893,0.0363096,2.22029,0.0165365,0.00933809,0.138732,0.0618409,0.0166283,0.0814025,0.0243849,5.13851e-07,1.30199,2.41082e-16,0.0747698,1.45194e-12,0.195719,1.93498,0.120669,2.34607,2.75104,2.21532,0.00171266,0.291197,0.518284,0.000577408,0,7.36334e-07,0.476902,0.00107543,1.10964,0.347984,0.15036,0.0574074,3.34026,0.000744343,2.28866,0.503692,0.78015,0.0350251,0.180313,1.65864,0.3268,0.603074,0.122978,0.0839938,3.69987e-06,0.0711401,0.288793,0.0139053,0.000191464,0.410307,0.162148,1.20927,0.0715647,0.364565,1.36897,2.78414e-08,0.522671,0.0192565,0.777807,0.455336,0.703769,1.74999,0.159928,0.193528,0.909637,0.132818,0.0837299,1.98014,2.72301,0.287706,0.114931,0.534481,2.14025,0.609098,0.00240589,0.498161,0.040252,0.100277,0.210691,0.0404337,0.88636,0.387987,0.366839,0.648156,0.600898,0.339187,1.04896,0.522636,0.00995772,0.317205,0,2.41321,0.0290645,0.483323,0.0266177,1.03281,1.21469,1.47903,0.000102895,1.17052,1.68732,0.298593,0.287357,1.36547,0.146669,0.170261,1.62265,0.0137787 | ||
|tfbs_overrepresentation_jaspar=MA0003.1;0,MA0004.1;0.00157387,MA0006.1;3.53408e-05,MA0007.1;0.0926301,MA0009.1;1.02753,MA0014.1;0,MA0017.1;2.91393,MA0019.1;0.170095,MA0024.1;0.00422874,MA0025.1;0.0414133,MA0027.1;0.583587,MA0028.1;7.23246e-13,MA0029.1;0.204815,MA0030.1;0.0442987,MA0031.1;0.190192,MA0038.1;0.0304064,MA0040.1;0.0513106,MA0041.1;1.6628e-06,MA0042.1;0.000356887,MA0043.1;0.00520209,MA0046.1;0.00143526,MA0048.1;0.910598,MA0050.1;0.014749,MA0051.1;0.358601,MA0052.1;18.9392,MA0055.1;1.38471,MA0056.1;0,MA0057.1;0.000641923,MA0058.1;0.00150637,MA0059.1;0.00329758,MA0060.1;4.74177e-06,MA0061.1;0.00983325,MA0063.1;0,MA0066.1;1.70408,MA0067.1;0.126141,MA0068.1;1.54442e-05,MA0069.1;0.0584528,MA0070.1;0.00240565,MA0071.1;3.9556,MA0072.1;2.46609,MA0073.1;0.000618619,MA0074.1;0.301791,MA0076.1;3.5709e-13,MA0077.1;0.03013,MA0078.1;0.156984,MA0081.1;0.231208,MA0083.1;2.17566,MA0084.1;0.257749,MA0087.1;0.145135,MA0088.1;0.00457888,MA0089.1;0,MA0090.1;1.10943,MA0091.1;1.23709,MA0092.1;1.4651,MA0093.1;1.45287e-05,MA0095.1;0,MA0098.1;0,MA0100.1;0.000167868,MA0101.1;0.0219431,MA0103.1;0.943874,MA0105.1;0.00159368,MA0106.1;0.00433563,MA0107.1;0.0375622,MA0108.2;2.82686,MA0109.1;0,MA0111.1;0.576789,MA0113.1;1.09407,MA0114.1;0.626427,MA0115.1;2.21598,MA0116.1;1.27695,MA0117.1;0.0367776,MA0119.1;0.0164847,MA0122.1;0.419449,MA0124.1;0.744519,MA0125.1;0.129685,MA0130.1;0,MA0131.1;0.0553218,MA0132.1;0,MA0133.1;0,MA0135.1;0.977857,MA0136.1;3.18721e-05,MA0139.1;2.31539e-05,MA0140.1;1.84916,MA0141.1;5.05899,MA0142.1;1.1529,MA0143.1;0.189961,MA0144.1;0.00589707,MA0145.1;0.400818,MA0146.1;2.36222e-08,MA0147.1;0.000238913,MA0148.1;0.112713,MA0149.1;5.11674e-09,MA0062.2;0,MA0035.2;0.626084,MA0039.2;0,MA0138.2;3.41663,MA0002.2;0.745027,MA0137.2;4.19458e-05,MA0104.2;4.48285e-08,MA0047.2;0.0437072,MA0112.2;3.68415,MA0065.2;1.42303,MA0150.1;1.22234,MA0151.1;0,MA0152.1;0.152191,MA0153.1;0.109171,MA0154.1;1.38082,MA0155.1;2.45612,MA0156.1;1.39408e-11,MA0157.1;0.091027,MA0158.1;0,MA0159.1;1.70093,MA0160.1;3.14711,MA0161.1;0,MA0162.1;0,MA0163.1;0.00697267,MA0164.1;0.595874,MA0080.2;9.19557e-06,MA0018.2;0.00123346,MA0099.2;0.218869,MA0079.2;0,MA0102.2;0.32659,MA0258.1;8.40025,MA0259.1;4.57418e-05,MA0442.1;0 | |||
}} | }} |
Revision as of 11:00, 23 January 2013
Phase1 CAGE Peaks
Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data
GO ID | GO name | FDR corrected p-value |
---|---|---|
GO:0030016 | myofibril | 6.63850788526452e-20 |
GO:0043292 | contractile fiber | 6.63850788526452e-20 |
GO:0030017 | sarcomere | 4.93323885977165e-18 |
GO:0006936 | muscle contraction | 4.93323885977165e-18 |
GO:0003012 | muscle system process | 4.93323885977165e-18 |
GO:0044449 | contractile fiber part | 6.44631618378781e-18 |
GO:0015629 | actin cytoskeleton | 6.6341492220398e-12 |
GO:0005865 | striated muscle thin filament | 1.0339319621583e-11 |
GO:0005856 | cytoskeleton | 1.0339319621583e-11 |
GO:0016529 | sarcoplasmic reticulum | 4.51026145755762e-10 |
GO:0016528 | sarcoplasm | 1.6906266979394e-09 |
GO:0007517 | muscle development | 2.28726684910154e-08 |
GO:0044262 | cellular carbohydrate metabolic process | 3.21987359413604e-08 |
GO:0006073 | glucan metabolic process | 1.47209029311675e-07 |
GO:0005977 | glycogen metabolic process | 1.47209029311675e-07 |
GO:0006112 | energy reserve metabolic process | 3.44415461394289e-07 |
GO:0003779 | actin binding | 1.51130273668146e-06 |
GO:0015980 | energy derivation by oxidation of organic compounds | 1.51130273668146e-06 |
GO:0005975 | carbohydrate metabolic process | 2.08845564268027e-06 |
GO:0044264 | cellular polysaccharide metabolic process | 2.28102952796028e-06 |
GO:0005976 | polysaccharide metabolic process | 2.28102952796028e-06 |
GO:0006941 | striated muscle contraction | 2.60531734685959e-06 |
GO:0006937 | regulation of muscle contraction | 5.67228309079659e-06 |
GO:0016459 | myosin complex | 7.89432389351628e-06 |
GO:0014706 | striated muscle development | 1.1340964982912e-05 |
GO:0048628 | myoblast maturation | 1.39616554455328e-05 |
GO:0042692 | muscle cell differentiation | 1.41575044575968e-05 |
GO:0005737 | cytoplasm | 1.41691809982314e-05 |
GO:0048741 | skeletal muscle fiber development | 1.41691809982314e-05 |
GO:0048747 | muscle fiber development | 1.41691809982314e-05 |
GO:0048627 | myoblast development | 1.41691809982314e-05 |
GO:0043228 | non-membrane-bound organelle | 1.41691809982314e-05 |
GO:0043232 | intracellular non-membrane-bound organelle | 1.41691809982314e-05 |
GO:0007519 | skeletal muscle development | 1.41691809982314e-05 |
GO:0044275 | cellular carbohydrate catabolic process | 1.50948651418721e-05 |
GO:0006096 | glycolysis | 2.47947546690933e-05 |
GO:0016052 | carbohydrate catabolic process | 2.60401473819343e-05 |
GO:0008092 | cytoskeletal protein binding | 2.88526153109174e-05 |
GO:0048469 | cell maturation | 2.98145699955833e-05 |
GO:0044430 | cytoskeletal part | 3.4053639074165e-05 |
GO:0042383 | sarcolemma | 4.10325956241249e-05 |
GO:0032982 | myosin filament | 4.34707524595105e-05 |
GO:0005863 | striated muscle thick filament | 4.34707524595105e-05 |
GO:0046365 | monosaccharide catabolic process | 5.21259467880746e-05 |
GO:0019320 | hexose catabolic process | 5.21259467880746e-05 |
GO:0006007 | glucose catabolic process | 5.21259467880746e-05 |
GO:0005859 | muscle myosin complex | 5.53628006667653e-05 |
GO:0044444 | cytoplasmic part | 6.66120021334703e-05 |
GO:0022836 | gated channel activity | 6.66120021334703e-05 |
GO:0046164 | alcohol catabolic process | 6.66120021334703e-05 |
GO:0055001 | muscle cell development | 6.91778495009794e-05 |
GO:0005200 | structural constituent of cytoskeleton | 7.24404472678836e-05 |
GO:0022832 | voltage-gated channel activity | 7.29122378940374e-05 |
GO:0005244 | voltage-gated ion channel activity | 7.29122378940374e-05 |
GO:0016460 | myosin II complex | 8.42121964425324e-05 |
GO:0021700 | developmental maturation | 8.42121964425324e-05 |
GO:0045445 | myoblast differentiation | 0.000108005354740808 |
GO:0006006 | glucose metabolic process | 0.000124424081719913 |
GO:0046873 | metal ion transmembrane transporter activity | 0.000130993903762939 |
GO:0005216 | ion channel activity | 0.000151647227747766 |
GO:0005261 | cation channel activity | 0.000195405012622561 |
GO:0022838 | substrate specific channel activity | 0.000195405012622561 |
GO:0005245 | voltage-gated calcium channel activity | 0.000237287573768295 |
GO:0022803 | passive transmembrane transporter activity | 0.000304528883894647 |
GO:0015267 | channel activity | 0.000304528883894647 |
GO:0005861 | troponin complex | 0.000316666678384183 |
GO:0016301 | kinase activity | 0.000325547139593786 |
GO:0022843 | voltage-gated cation channel activity | 0.000343206584026772 |
GO:0005509 | calcium ion binding | 0.000400625326567022 |
GO:0006793 | phosphorus metabolic process | 0.000409390567859046 |
GO:0006796 | phosphate metabolic process | 0.000409390567859046 |
GO:0030315 | T-tubule | 0.000433076318553513 |
GO:0019318 | hexose metabolic process | 0.000665296773635721 |
GO:0016772 | transferase activity, transferring phosphorus-containing groups | 0.000774740770420608 |
GO:0005996 | monosaccharide metabolic process | 0.000785299523210208 |
GO:0043687 | post-translational protein modification | 0.001238247934431 |
GO:0031674 | I band | 0.00139711898584805 |
GO:0006816 | calcium ion transport | 0.00141878109616827 |
GO:0007010 | cytoskeleton organization and biogenesis | 0.00143076673964371 |
GO:0006811 | ion transport | 0.00160403311387074 |
GO:0030239 | myofibril assembly | 0.00160403311387074 |
GO:0055002 | striated muscle cell development | 0.00160403311387074 |
GO:0008324 | cation transmembrane transporter activity | 0.0016258234187808 |
GO:0005516 | calmodulin binding | 0.0016258234187808 |
GO:0030001 | metal ion transport | 0.00164683901701435 |
GO:0043234 | protein complex | 0.00209420278870142 |
GO:0015075 | ion transmembrane transporter activity | 0.00215177912112125 |
GO:0043167 | ion binding | 0.00237676334324251 |
GO:0044248 | cellular catabolic process | 0.00237848262329217 |
GO:0022891 | substrate-specific transmembrane transporter activity | 0.00243674882814143 |
GO:0004674 | protein serine/threonine kinase activity | 0.00258292383336018 |
GO:0043412 | biopolymer modification | 0.00270370145131495 |
GO:0044265 | cellular macromolecule catabolic process | 0.00276129013198577 |
GO:0005524 | ATP binding | 0.00318444708497491 |
GO:0009057 | macromolecule catabolic process | 0.00322446437290832 |
GO:0005862 | muscle thin filament tropomyosin | 0.00328146987032857 |
GO:0031032 | actomyosin structure organization and biogenesis | 0.0034781682369743 |
GO:0032559 | adenyl ribonucleotide binding | 0.0037768599370058 |
GO:0006464 | protein modification process | 0.00407859673403337 |
GO:0006468 | protein amino acid phosphorylation | 0.00413237724084564 |
GO:0044237 | cellular metabolic process | 0.00419140181585729 |
GO:0015674 | di-, tri-valent inorganic cation transport | 0.00430163285417194 |
GO:0043170 | macromolecule metabolic process | 0.00430163285417194 |
GO:0008134 | transcription factor binding | 0.00439096801074312 |
GO:0005515 | protein binding | 0.00465164555459543 |
GO:0003712 | transcription cofactor activity | 0.00466778514366748 |
GO:0044260 | cellular macromolecule metabolic process | 0.00479363763324321 |
GO:0004332 | fructose-bisphosphate aldolase activity | 0.00479363763324321 |
GO:0006812 | cation transport | 0.00518734654111825 |
GO:0006066 | alcohol metabolic process | 0.00518734654111825 |
GO:0046872 | metal ion binding | 0.00580245027252995 |
GO:0044238 | primary metabolic process | 0.00640241678522017 |
GO:0005523 | tropomyosin binding | 0.00666655678774427 |
GO:0030554 | adenyl nucleotide binding | 0.0074621237695181 |
GO:0004672 | protein kinase activity | 0.00783834129124982 |
GO:0048513 | organ development | 0.00876394158407556 |
GO:0007520 | myoblast fusion | 0.00876394158407556 |
GO:0016832 | aldehyde-lyase activity | 0.00876394158407556 |
GO:0014902 | myotube differentiation | 0.00876394158407556 |
GO:0000768 | syncytium formation by plasma membrane fusion | 0.00876394158407556 |
GO:0000287 | magnesium ion binding | 0.00895164457992543 |
GO:0016773 | phosphotransferase activity, alcohol group as acceptor | 0.00904855313356744 |
GO:0016310 | phosphorylation | 0.00910071263110455 |
GO:0051146 | striated muscle cell differentiation | 0.00951750308025057 |
GO:0006949 | syncytium formation | 0.0110923462177642 |
GO:0005262 | calcium channel activity | 0.0112593221212565 |
GO:0022892 | substrate-specific transporter activity | 0.0128374689699708 |
GO:0009056 | catabolic process | 0.0128374689699708 |
GO:0002053 | positive regulation of mesenchymal cell proliferation | 0.0133702713094334 |
GO:0010464 | regulation of mesenchymal cell proliferation | 0.0133702713094334 |
GO:0016868 | intramolecular transferase activity, phosphotransferases | 0.0133702713094334 |
GO:0010463 | mesenchymal cell proliferation | 0.0133702713094334 |
GO:0022857 | transmembrane transporter activity | 0.0139352701239515 |
GO:0044424 | intracellular part | 0.0146429088818082 |
GO:0001501 | skeletal development | 0.0150672559433597 |
GO:0045214 | sarcomere organization | 0.0161640520482102 |
GO:0005978 | glycogen biosynthetic process | 0.0193881660971687 |
GO:0009250 | glucan biosynthetic process | 0.0193881660971687 |
GO:0016010 | dystrophin-associated glycoprotein complex | 0.0228370118473024 |
GO:0016740 | transferase activity | 0.0237176870957362 |
GO:0005622 | intracellular | 0.026894973456371 |
GO:0043283 | biopolymer metabolic process | 0.0278182915586624 |
GO:0051239 | regulation of multicellular organismal process | 0.0295662197472394 |
GO:0005242 | inward rectifier potassium channel activity | 0.0295662197472394 |
GO:0045026 | plasma membrane fusion | 0.0295662197472394 |
GO:0004683 | calmodulin-dependent protein kinase activity | 0.0295662197472394 |
GO:0004198 | calcium-dependent cysteine-type endopeptidase activity | 0.0295662197472394 |
GO:0032555 | purine ribonucleotide binding | 0.0297871396808927 |
GO:0032553 | ribonucleotide binding | 0.0297871396808927 |
GO:0032991 | macromolecular complex | 0.0297871396808927 |
GO:0045941 | positive regulation of transcription | 0.0297871396808927 |
GO:0051216 | cartilage development | 0.0326783196456447 |
GO:0002062 | chondrocyte differentiation | 0.0326783196456447 |
GO:0045935 | positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | 0.032746036742064 |
GO:0009893 | positive regulation of metabolic process | 0.0357407567057484 |
GO:0003983 | UTP:glucose-1-phosphate uridylyltransferase activity | 0.0401944068529717 |
GO:0033018 | sarcoplasmic reticulum lumen | 0.0401944068529717 |
GO:0016014 | dystrobrevin complex | 0.0401944068529717 |
GO:0043501 | skeletal muscle adaptation | 0.0401944068529717 |
GO:0032682 | negative regulation of chemokine production | 0.0401944068529717 |
GO:0035025 | positive regulation of Rho protein signal transduction | 0.0401944068529717 |
GO:0046314 | phosphocreatine biosynthetic process | 0.0401944068529717 |
GO:0014888 | striated muscle adaptation | 0.0401944068529717 |
GO:0019682 | glyceraldehyde-3-phosphate metabolic process | 0.0401944068529717 |
GO:0032642 | regulation of chemokine production | 0.0401944068529717 |
GO:0015272 | ATP-activated inward rectifier potassium channel activity | 0.0401944068529717 |
GO:0004133 | glycogen debranching enzyme activity | 0.0401944068529717 |
GO:0051748 | UDP-sugar pyrophosphorylase activity | 0.0401944068529717 |
GO:0006198 | cAMP catabolic process | 0.0401944068529717 |
GO:0060157 | urinary bladder development | 0.0401944068529717 |
GO:0007499 | ectoderm and mesoderm interaction | 0.0401944068529717 |
GO:0004807 | triose-phosphate isomerase activity | 0.0401944068529717 |
GO:0043500 | muscle adaptation | 0.0401944068529717 |
GO:0033692 | cellular polysaccharide biosynthetic process | 0.0412632561340382 |
GO:0003714 | transcription corepressor activity | 0.0437339317303227 |
GO:0017076 | purine nucleotide binding | 0.0449103791072282 |
GO:0007507 | heart development | 0.0449103791072282 |
GO:0000271 | polysaccharide biosynthetic process | 0.0449103791072282 |
GO:0030955 | potassium ion binding | 0.04666578221818 |
GO:0051098 | regulation of binding | 0.0488738627815884 |
GO:0007528 | neuromuscular junction development | 0.0488738627815884 |
Relative expression of the co-expression cluster over median <br>Analyst:
Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>
TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data
Novel motifs
JASPAR motifs
Motifs | -log10(p-value) |
---|---|
MA0003.1 | 0 |
MA0004.1 | 0.00157387 |
MA0006.1 | 3.53408e-05 |
MA0007.1 | 0.0926301 |
MA0009.1 | 1.02753 |
MA0014.1 | 0 |
MA0017.1 | 2.91393 |
MA0019.1 | 0.170095 |
MA0024.1 | 0.00422874 |
MA0025.1 | 0.0414133 |
MA0027.1 | 0.583587 |
MA0028.1 | 7.23246e-13 |
MA0029.1 | 0.204815 |
MA0030.1 | 0.0442987 |
MA0031.1 | 0.190192 |
MA0038.1 | 0.0304064 |
MA0040.1 | 0.0513106 |
MA0041.1 | 1.6628e-06 |
MA0042.1 | 0.000356887 |
MA0043.1 | 0.00520209 |
MA0046.1 | 0.00143526 |
MA0048.1 | 0.910598 |
MA0050.1 | 0.014749 |
MA0051.1 | 0.358601 |
MA0052.1 | 18.9392 |
MA0055.1 | 1.38471 |
MA0056.1 | 0 |
MA0057.1 | 0.000641923 |
MA0058.1 | 0.00150637 |
MA0059.1 | 0.00329758 |
MA0060.1 | 4.74177e-06 |
MA0061.1 | 0.00983325 |
MA0063.1 | 0 |
MA0066.1 | 1.70408 |
MA0067.1 | 0.126141 |
MA0068.1 | 1.54442e-05 |
MA0069.1 | 0.0584528 |
MA0070.1 | 0.00240565 |
MA0071.1 | 3.9556 |
MA0072.1 | 2.46609 |
MA0073.1 | 0.000618619 |
MA0074.1 | 0.301791 |
MA0076.1 | 3.5709e-13 |
MA0077.1 | 0.03013 |
MA0078.1 | 0.156984 |
MA0081.1 | 0.231208 |
MA0083.1 | 2.17566 |
MA0084.1 | 0.257749 |
MA0087.1 | 0.145135 |
MA0088.1 | 0.00457888 |
MA0089.1 | 0 |
MA0090.1 | 1.10943 |
MA0091.1 | 1.23709 |
MA0092.1 | 1.4651 |
MA0093.1 | 1.45287e-05 |
MA0095.1 | 0 |
MA0098.1 | 0 |
MA0100.1 | 0.000167868 |
MA0101.1 | 0.0219431 |
MA0103.1 | 0.943874 |
MA0105.1 | 0.00159368 |
MA0106.1 | 0.00433563 |
MA0107.1 | 0.0375622 |
MA0108.2 | 2.82686 |
MA0109.1 | 0 |
MA0111.1 | 0.576789 |
MA0113.1 | 1.09407 |
MA0114.1 | 0.626427 |
MA0115.1 | 2.21598 |
MA0116.1 | 1.27695 |
MA0117.1 | 0.0367776 |
MA0119.1 | 0.0164847 |
MA0122.1 | 0.419449 |
MA0124.1 | 0.744519 |
MA0125.1 | 0.129685 |
MA0130.1 | 0 |
MA0131.1 | 0.0553218 |
MA0132.1 | 0 |
MA0133.1 | 0 |
MA0135.1 | 0.977857 |
MA0136.1 | 3.18721e-05 |
MA0139.1 | 2.31539e-05 |
MA0140.1 | 1.84916 |
MA0141.1 | 5.05899 |
MA0142.1 | 1.1529 |
MA0143.1 | 0.189961 |
MA0144.1 | 0.00589707 |
MA0145.1 | 0.400818 |
MA0146.1 | 2.36222e-08 |
MA0147.1 | 0.000238913 |
MA0148.1 | 0.112713 |
MA0149.1 | 5.11674e-09 |
MA0062.2 | 0 |
MA0035.2 | 0.626084 |
MA0039.2 | 0 |
MA0138.2 | 3.41663 |
MA0002.2 | 0.745027 |
MA0137.2 | 4.19458e-05 |
MA0104.2 | 4.48285e-08 |
MA0047.2 | 0.0437072 |
MA0112.2 | 3.68415 |
MA0065.2 | 1.42303 |
MA0150.1 | 1.22234 |
MA0151.1 | 0 |
MA0152.1 | 0.152191 |
MA0153.1 | 0.109171 |
MA0154.1 | 1.38082 |
MA0155.1 | 2.45612 |
MA0156.1 | 1.39408e-11 |
MA0157.1 | 0.091027 |
MA0158.1 | 0 |
MA0159.1 | 1.70093 |
MA0160.1 | 3.14711 |
MA0161.1 | 0 |
MA0162.1 | 0 |
MA0163.1 | 0.00697267 |
MA0164.1 | 0.595874 |
MA0080.2 | 9.19557e-06 |
MA0018.2 | 0.00123346 |
MA0099.2 | 0.218869 |
MA0079.2 | 0 |
MA0102.2 | 0.32659 |
MA0258.1 | 8.40025 |
MA0259.1 | 4.57418e-05 |
MA0442.1 | 0 |