UBERON:0004381
From FANTOM5_SSTAR
| Name: | skeleton of limb | |
|---|---|---|
| Namespace: | FANTOM | |
| Definition: | "The collection of all skeletal elements in an individual limb." [UBERON:cjm] | |
| Xrefs: |
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| Synonyms: |
"limb skeleton" EXACT [EHDAA2:0002221] "set of bones of limb" EXACT [] | |
| Comments: | Note that EHDAA2 considers hip and shoulder joints part of limb skeleton |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0010712(limb skeleton subdivision),UBERON:0011582(paired limb/fin skeleton) |
|---|---|
| develops_from: | UBERON:0003081(lateral plate mesoderm) |
| part_of: | UBERON:0002101(limb) |
Children
| is a: | UBERON:0001441 (hindlimb skeleton) |
|---|---|
| part of: | UBERON:0002428 (limb bone),UBERON:0015061 (limb endochondral element) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Mouse (Mus musculus)
- 1350-25C3 (bone (os femoris), neonate N20)
- 1525-43A6 (bone (os femoris), neonate N16)
- 1985-43F5 (bone (os femoris), neonate N02)
- 56-12G2 (bone (os femoris), adult)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004381 (skeleton of limb), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
