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MCL coexpression mm9:898: Difference between revisions

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|ontology_enrichment_disease=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0002193!4.71e-20!48;UBERON:0002405!4.71e-20!48;UBERON:0004177!1.45e-17!29;UBERON:0005057!1.45e-17!29;UBERON:0002390!1.73e-16!45;UBERON:0003061!1.73e-16!45;UBERON:0000077!1.67e-13!35;UBERON:0001041!2.20e-13!80;UBERON:0000065!5.54e-11!41;UBERON:0002370!7.38e-11!23;UBERON:0000974!7.38e-11!23;UBERON:0004807!7.38e-11!23;UBERON:0005058!7.38e-11!23;UBERON:0003351!7.38e-11!23;UBERON:0009113!7.38e-11!23;UBERON:0003295!7.38e-11!23;UBERON:0009722!7.38e-11!23;UBERON:0005562!7.38e-11!23;UBERON:0007690!7.38e-11!23;UBERON:0001004!1.40e-10!42;UBERON:0006562!3.07e-10!24;UBERON:0003408!3.07e-10!24;UBERON:0001557!3.07e-10!24;UBERON:0001042!3.07e-10!24;UBERON:0008814!3.07e-10!24;UBERON:0009145!3.07e-10!24;UBERON:0001007!6.04e-10!116;UBERON:0001555!6.04e-10!116;UBERON:0007026!6.04e-10!116;UBERON:0004119!1.34e-09!118;UBERON:0000925!1.34e-09!118;UBERON:0006595!1.34e-09!118;UBERON:0005911!3.04e-09!69;UBERON:0002106!4.61e-09!6;UBERON:0004457!4.61e-09!6;UBERON:0000042!4.61e-09!6;UBERON:0004854!4.61e-09!6;UBERON:0009034!4.61e-09!6;UBERON:0002095!4.61e-09!6;UBERON:0004782!4.61e-09!6;UBERON:0003281!4.61e-09!6;UBERON:0009664!4.61e-09!6;UBERON:0002296!4.61e-09!6;UBERON:0005602!4.61e-09!6;UBERON:0001179!4.61e-09!6;UBERON:0006293!4.61e-09!6;UBERON:0000072!1.14e-08!27;UBERON:0004921!1.46e-08!114;UBERON:0003081!7.37e-08!87;UBERON:0003887!8.84e-07!10;UBERON:0003929!9.43e-07!55
|ontology_enrichment_uberon=UBERON:0002193!4.71e-20!48;UBERON:0002405!4.71e-20!48;UBERON:0004177!1.45e-17!29;UBERON:0005057!1.45e-17!29;UBERON:0002390!1.73e-16!45;UBERON:0003061!1.73e-16!45;UBERON:0000077!1.67e-13!35;UBERON:0001041!2.20e-13!80;UBERON:0000065!5.54e-11!41;UBERON:0002370!7.38e-11!23;UBERON:0000974!7.38e-11!23;UBERON:0004807!7.38e-11!23;UBERON:0005058!7.38e-11!23;UBERON:0003351!7.38e-11!23;UBERON:0009113!7.38e-11!23;UBERON:0003295!7.38e-11!23;UBERON:0009722!7.38e-11!23;UBERON:0005562!7.38e-11!23;UBERON:0007690!7.38e-11!23;UBERON:0001004!1.40e-10!42;UBERON:0006562!3.07e-10!24;UBERON:0003408!3.07e-10!24;UBERON:0001557!3.07e-10!24;UBERON:0001042!3.07e-10!24;UBERON:0008814!3.07e-10!24;UBERON:0009145!3.07e-10!24;UBERON:0001007!6.04e-10!116;UBERON:0001555!6.04e-10!116;UBERON:0007026!6.04e-10!116;UBERON:0004119!1.34e-09!118;UBERON:0000925!1.34e-09!118;UBERON:0006595!1.34e-09!118;UBERON:0005911!3.04e-09!69;UBERON:0002106!4.61e-09!6;UBERON:0004457!4.61e-09!6;UBERON:0000042!4.61e-09!6;UBERON:0004854!4.61e-09!6;UBERON:0009034!4.61e-09!6;UBERON:0002095!4.61e-09!6;UBERON:0004782!4.61e-09!6;UBERON:0003281!4.61e-09!6;UBERON:0009664!4.61e-09!6;UBERON:0002296!4.61e-09!6;UBERON:0005602!4.61e-09!6;UBERON:0001179!4.61e-09!6;UBERON:0006293!4.61e-09!6;UBERON:0000072!1.14e-08!27;UBERON:0004921!1.46e-08!114;UBERON:0003081!7.37e-08!87;UBERON:0003887!8.84e-07!10;UBERON:0003929!9.43e-07!55
|tfbs_overrepresentation_for_novel_motifs=0.393008,0.534222,0.367606,0.434198,0.720982,0.448401,0.538088,0.515265,1.02512,0.170907,0.494602,0.526159,0.173454,0.550255,0.275867,0,0.742571,0.703873,0.483643,0.29826,0.332107,0.0622758,0.549359,0.258745,0.374936,0.577606,1.45743,0.469052,0.303071,1.23861,0.455168,0.843667,1.29258,0.425071,0.276324,0.363049,0.242032,0.522578,0.631914,0.195877,0.256422,0.460258,0.450632,0.761266,0.663502,0.423266,0.662995,0.484612,0.687215,0.305876,0.725127,0.604356,0.732634,0.985264,1.00271,0.557354,0.314394,0.513517,2.03255,0.555328,0.823643,0.613749,0.192045,0.713876,0.568415,1.78254,1.139,1.48833,0.818971,1.34113,0.349355,0.178433,0.236196,1.03623,0.140213,0.131016,1.35784,0.651651,0.806481,0.336166,0.179489,0.759925,0.612313,0.167672,0.920903,0.108172,0.123242,0.376919,0.667883,1.65055,1.20871,0.925879,0.856465,0.265734,0.218233,0.585369,0.982739,0.859272,1.59353,0.101559,1.26039,0.843387,0.967837,0.725721,0.724668,0.459825,0.784351,2.09671,0.340849,0.333829,0.386136,0.96962,0.337254,0.499714,1.21576,0.708441,2.33941,0.437894,0.743872,1.24715,1.04163,0.692953,0.579418,0.650748,1.26989,0.810177,0.546178,0.849691,1.13749,0.268537,0.950857,0.427043,1.10792,0.570914,1.23736,0.061199,1.82874,0.461647,1.18819,2.01886,1.6187,1.14372,1.44306,0.854131,0.718197,0.460705,0.666107,1.9792,0.403515,1.33415,1.25168,0.203102,0.986833,0.207643,0.569994,1.06851,0.605358,0.782826,0.39061,0.400939,1.1977,0.920047,0.810622,0.383936,0.714896,0.562634,0.240994,0.524587,0.166768
}}
}}

Revision as of 19:05, 26 November 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr11:32100273..32100286,-p1@Il9r
Mm9::chr14:64035654..64035682,-p3@Blk
Mm9::chr18:35808966..35808982,-p@chr18:35808966..35808982
-
Mm9::chr18:35808989..35808998,-p3@2010001M09Rik
Mm9::chr18:35809003..35809028,-p1@2010001M09Rik
Mm9::chr5:121144599..121144612,-p@chr5:121144599..121144612
-
Mm9::chr9:121846895..121846923,+p4@1700048O20Rik
Mm9::chr9:70082969..70083013,+p@chr9:70082969..70083013
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Cell Type
Ontology termp-valuen
megakaryocyte progenitor cell2.86e-076
megakaryocyte2.86e-076

Uber Anatomy
Ontology termp-valuen
hemolymphoid system4.71e-2048
immune system4.71e-2048
hemopoietic organ1.45e-1729
immune organ1.45e-1729
hematopoietic system1.73e-1645
blood island1.73e-1645
mixed endoderm/mesoderm-derived structure1.67e-1335
foregut2.20e-1380
respiratory tract5.54e-1141
thymus7.38e-1123
neck7.38e-1123
respiratory system epithelium7.38e-1123
hemolymphoid system gland7.38e-1123
pharyngeal epithelium7.38e-1123
thymic region7.38e-1123
pharyngeal gland7.38e-1123
entire pharyngeal arch endoderm7.38e-1123
thymus primordium7.38e-1123
early pharyngeal endoderm7.38e-1123
respiratory system1.40e-1042
pharynx3.07e-1024
gland of gut3.07e-1024
upper respiratory tract3.07e-1024
chordate pharynx3.07e-1024
pharyngeal arch system3.07e-1024
pharyngeal region of foregut3.07e-1024
digestive system6.04e-10116
digestive tract6.04e-10116
primitive gut6.04e-10116
endoderm-derived structure1.34e-09118
endoderm1.34e-09118
presumptive endoderm1.34e-09118
endo-epithelium3.04e-0969
spleen4.61e-096
cavity lining4.61e-096
serous membrane4.61e-096
gastrointestinal system mesentery4.61e-096
stomach region4.61e-096
mesentery4.61e-096
gastrointestinal system serosa4.61e-096
mesentery of stomach4.61e-096
gut mesentery4.61e-096
dorsal mesentery4.61e-096
dorsal mesogastrium4.61e-096
peritoneal cavity4.61e-096
spleen primordium4.61e-096
segment of respiratory tract1.14e-0827
subdivision of digestive tract1.46e-08114
lateral plate mesoderm7.37e-0887
intraembryonic coelom8.84e-0710
gut epithelium9.43e-0755


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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