FFCP PHASE1:Hg19::chr2:233320855..233320886,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=248 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=437 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-15bp_to_uc002vsu.3_5end | |||
|coexpression_cluster_id=C285 | |||
|description=CAGE_peak_1_at_ALPI_5end | |||
|id=chr2:233320855..233320886,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002563;1.10e-08;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0002563,1.13e-08,4 | |||
|ontology_enrichment_development_v019=UBERON:0008947;1.03e-26;29!UBERON:0006595;4.02e-10;86!UBERON:0000358;4.68e-09;1 | |||
|ontology_enrichment_disease=DOID:305!1.49e-09!106 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:305,6.07e-09,106 | |||
|ontology_enrichment_uberon=UBERON:0001737!2.90e-49!9;UBERON:0001557!1.47e-27!19;UBERON:0004921!9.47e-19!129;UBERON:0004185!9.47e-19!129;UBERON:0001007!3.27e-16!155;UBERON:0001555!3.27e-16!155;UBERON:0007026!3.27e-16!155;UBERON:0008947!1.63e-15!38;UBERON:0003258!1.63e-15!38;UBERON:0000072!8.30e-15!46;UBERON:0004119!1.99e-14!169;UBERON:0000925!1.99e-14!169;UBERON:0006595!1.99e-14!169;UBERON:0000160!5.84e-14!27;UBERON:0005409!5.13e-13!35;UBERON:0000065!1.58e-12!53;UBERON:0000063!2.00e-12!97;UBERON:0000059!7.51e-12!11;UBERON:0001155!1.14e-09!9;UBERON:0000077!1.72e-09!130;UBERON:0001004!1.38e-08!72;UBERON:0001041!5.54e-08!98 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;9.98e-73;9!UBERON:0001557;9.98e-73;9!UBERON:0000160;6.23e-27;17!UBERON:0005409;2.48e-26;22!UBERON:0000072;4.60e-19;37!UBERON:0000065;1.28e-16;44!UBERON:0004921;3.00e-16;33!UBERON:0002108;4.43e-15;4!UBERON:0001155;4.23e-14;9!UBERON:0000059;1.42e-11;11!UBERON:0001242;1.10e-08;4!UBERON:0001262;1.10e-08;4!UBERON:0004786;1.10e-08;4!UBERON:0004808;1.10e-08;4!UBERON:0001277;1.10e-08;4!UBERON:0001004;9.78e-08;65 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,9.98e-73,9;UBERON:0001557,8.15e-34,19;UBERON:0000160,6.23e-27,17;UBERON:0004921,3.46e-26,118;UBERON:0005409,3.71e-23,25;UBERON:0001007,1.08e-20,145;UBERON:0001555,1.08e-20,145;UBERON:0007026,1.08e-20,145;UBERON:0008947,5.16e-20,38;UBERON:0003258,5.16e-20,38;UBERON:0004119,1.97e-18,160;UBERON:0000925,1.97e-18,160;UBERON:0006595,1.97e-18,160;UBERON:0000072,7.11e-16,47;UBERON:0002108,4.43e-15,4;UBERON:0001155,4.23e-14,9;UBERON:0000065,1.31e-13,54;UBERON:0011216,1.83e-13,223;UBERON:0000059,1.42e-11,11;UBERON:0001041,2.25e-11,87;UBERON:0001004,1.71e-09,74;UBERON:0001242,1.13e-08,4;UBERON:0001262,1.13e-08,4;UBERON:0004786,1.13e-08,4;UBERON:0004808,1.13e-08,4;UBERON:0001277,1.13e-08,4 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0787107813136792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.42159801053347,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,306.296305303156,289.628497554179,311.145239579575,310.367239268957,276.706893997356,279.742059931983,311.190659233659,262.348098872588,315.877415852986,0,0,0,0,0,0,0,0,11.4379247845096,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,16.6786040436439,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915694648183434,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,53.8963914430895,0,0,0,0,0,0,0,0,0,948.962955713923,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.97894300007517,0,1.99052386215701,89.8728855353926,31.7735675365485,0,0,0,0,0,0,0,0,0,0,77.4340582711449,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195551382734803,0,0,0,0,0,0,0,0,0.235694034616795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.49487848582361,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236417121897595,0.157363764404994,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171086837884329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.345430341731199,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.280272163313789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121917924982269,0,0,0,0.485710993059139,0,0,0,0,0,0,193.244091902293,99.4446000293006,0,0,0,0,0,0,0,0,0,0,0,0,0,3.65168194123259,0,0,0,0,0,75.6508381937023,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.372448285775147,0,0,0,0,0,0,0,0,0,0,0,0,2.34640942403454,0,0,0,0,0 | |||
|short_description=p1@ALPI | |||
}} |
Revision as of 09:13, 21 January 2014
Short description: | p1@ALPI |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ALPI_5end |
Coexpression cluster: | C285_cervical_Hep2_small_colon_temporal_duodenum_bronchogenic |
Association with transcript: | -15bp_to_uc002vsu.3_5end |
EntrezGene: | ALPI |
HGNC: | 437 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 1.13e-08 | 4 |
Ontology term | p-value | n |
---|---|---|
larynx | 9.98e-73 | 9 |
upper respiratory tract | 8.15e-34 | 19 |
intestine | 6.23e-27 | 17 |
subdivision of digestive tract | 3.46e-26 | 118 |
gastrointestinal system | 3.71e-23 | 25 |
digestive system | 1.08e-20 | 145 |
digestive tract | 1.08e-20 | 145 |
primitive gut | 1.08e-20 | 145 |
respiratory primordium | 5.16e-20 | 38 |
endoderm of foregut | 5.16e-20 | 38 |
endoderm-derived structure | 1.97e-18 | 160 |
endoderm | 1.97e-18 | 160 |
presumptive endoderm | 1.97e-18 | 160 |
segment of respiratory tract | 7.11e-16 | 47 |
small intestine | 4.43e-15 | 4 |
colon | 4.23e-14 | 9 |
respiratory tract | 1.31e-13 | 54 |
organ system subdivision | 1.83e-13 | 223 |
large intestine | 1.42e-11 | 11 |
foregut | 2.25e-11 | 87 |
respiratory system | 1.71e-09 | 74 |
intestinal mucosa | 1.13e-08 | 4 |
wall of intestine | 1.13e-08 | 4 |
gastrointestinal system mucosa | 1.13e-08 | 4 |
gastrointestinal system epithelium | 1.13e-08 | 4 |
intestinal epithelium | 1.13e-08 | 4 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 6.07e-09 | 106 |