FFCP PHASE1:Hg19::chr2:166060586..166060603,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6328 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10590 | |||
|TSSclassifier=strong | |||
|UniProt=Q9NY46,Q9C007 | |||
|association_with_transcript=-9bp_to_ENST00000360093,NM_001081676,NM_001081677,NM_006922,uc002ucx.2,uc002ucy.2,uc002ucz.2_5end | |||
|coexpression_cluster_id=C2665 | |||
|description=CAGE_peak_3_at_SCN3A_5end | |||
|id=chr2:166060586..166060603,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006601;4.41e-19;82!UBERON:0006215;5.72e-10;3!UBERON:0006241;3.19e-09;3!UBERON:0003057;3.19e-09;3!UBERON:0010122;4.32e-07;2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.57e-58!82;UBERON:0001049!4.01e-58!57;UBERON:0005068!4.01e-58!57;UBERON:0006241!4.01e-58!57;UBERON:0007135!4.01e-58!57;UBERON:0005743!8.08e-55!86;UBERON:0000073!3.27e-53!94;UBERON:0001016!3.27e-53!94;UBERON:0002616!3.15e-50!59;UBERON:0007023!7.64e-50!115;UBERON:0000955!3.31e-49!69;UBERON:0006238!3.31e-49!69;UBERON:0002780!7.22e-48!41;UBERON:0001890!7.22e-48!41;UBERON:0006240!7.22e-48!41;UBERON:0003080!2.09e-46!42;UBERON:0002020!2.61e-39!34;UBERON:0003528!2.61e-39!34;UBERON:0001893!5.32e-39!34;UBERON:0002791!9.55e-38!33;UBERON:0003075!5.28e-37!86;UBERON:0007284!5.28e-37!86;UBERON:0001869!8.15e-37!32;UBERON:0002346!1.56e-34!90;UBERON:0002619!7.19e-30!22;UBERON:0003056!9.77e-28!61;UBERON:0000956!1.52e-27!25;UBERON:0000203!1.52e-27!25;UBERON:0001950!4.47e-27!20;UBERON:0004121!8.59e-23!169;UBERON:0000153!9.90e-23!129;UBERON:0007811!9.90e-23!129;UBERON:0000033!6.30e-22!123;UBERON:0000924!8.89e-22!173;UBERON:0006601!8.89e-22!173;UBERON:0000025!7.35e-16!194;UBERON:0002420!1.45e-13!9;UBERON:0007245!1.45e-13!9;UBERON:0010009!1.45e-13!9;UBERON:0010011!1.45e-13!9;UBERON:0000454!1.45e-13!9;UBERON:0002308!3.41e-13!9;UBERON:0000125!3.41e-13!9;UBERON:0003076!1.40e-12!15;UBERON:0003057!1.40e-12!15;UBERON:0004111!3.53e-12!241;UBERON:0009663!1.09e-10!7;UBERON:0000477!2.26e-10!286;UBERON:0001894!3.91e-10!7;UBERON:0006222!3.91e-10!7;UBERON:0001871!7.46e-10!7;UBERON:0000200!9.40e-10!6;UBERON:0004733!4.02e-09!12;UBERON:0002028!4.02e-09!12;UBERON:0007277!4.02e-09!12;UBERON:0000349!1.27e-08!5;UBERON:0002298!1.27e-08!8;UBERON:0002021!2.23e-08!5;UBERON:0000483!2.99e-08!309;UBERON:0004732!3.05e-08!13;UBERON:0001872!3.90e-08!5;UBERON:0000119!5.48e-08!312;UBERON:0000064!3.21e-07!219;UBERON:0000369!3.58e-07!4;UBERON:0002435!3.58e-07!4;UBERON:0000204!3.58e-07!4;UBERON:0010082!3.58e-07!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0003528;2.71e-60;34!UBERON:0002020;2.71e-60;34!UBERON:0002791;1.37e-59;32!UBERON:0001869;1.68e-59;32!UBERON:0001893;8.33e-56;34!UBERON:0002780;1.80e-55;41!UBERON:0001890;1.80e-55;41!UBERON:0002619;9.12e-55;22!UBERON:0000073;4.52e-53;53!UBERON:0002616;4.52e-53;53!UBERON:0001950;3.72e-49;20!UBERON:0000956;9.42e-48;25!UBERON:0000203;9.42e-48;25!UBERON:0001017;1.48e-34;75!UBERON:0000955;1.70e-33;68!UBERON:0001016;5.28e-32;83!UBERON:0002420;4.63e-26;9!UBERON:0007245;4.63e-26;9!UBERON:0010009;4.63e-26;9!UBERON:0010011;4.63e-26;9!UBERON:0000454;4.63e-26;9!UBERON:0000125;2.93e-25;9!UBERON:0002308;2.93e-25;9!UBERON:0009663;3.44e-20;7!UBERON:0000200;3.97e-18;6!UBERON:0004733;4.41e-18;12!UBERON:0002028;4.41e-18;12!UBERON:0004732;1.48e-16;13!UBERON:0002298;1.87e-16;6!UBERON:0001871;4.73e-16;6!UBERON:0000349;7.57e-16;5!UBERON:0001872;6.56e-15;5!UBERON:0007023;5.15e-13;114!UBERON:0000369;6.48e-13;4!UBERON:0002435;6.48e-13;4!UBERON:0000204;6.48e-13;4!UBERON:0011216;1.31e-11;132!UBERON:0002680;2.31e-11;9!UBERON:0001895;2.31e-11;9!UBERON:0001894;6.19e-11;7!UBERON:0002021;1.22e-10;5!UBERON:0005383;3.35e-10;3!UBERON:0005382;3.35e-10;3!UBERON:0001870;3.73e-10;3!UBERON:0002240;3.19e-09;3!UBERON:0005174;3.19e-09;3!UBERON:0001137;3.19e-09;3!UBERON:0000988;3.85e-09;3!UBERON:0001896;5.20e-09;3!UBERON:0005290;5.20e-09;3!UBERON:0010314;7.15e-08;132!UBERON:0000007;1.06e-07;2!UBERON:0002771;1.39e-07;2!UBERON:0001876;1.39e-07;2!UBERON:0002702;2.64e-07;2!UBERON:0001954;3.13e-07;2!UBERON:0003022;3.13e-07;2!UBERON:0002421;3.13e-07;2!UBERON:0002600;3.13e-07;2!UBERON:0001897;4.32e-07;2!UBERON:0001873;4.32e-07;2!UBERON:0010225;4.32e-07;2!UBERON:0002148;9.40e-07;2!UBERON:0006331;9.40e-07;2!UBERON:0009662;9.40e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,3.61e-102,56;UBERON:0005068,3.61e-102,56;UBERON:0006241,3.61e-102,56;UBERON:0007135,3.61e-102,56;UBERON:0000073,2.73e-94,53;UBERON:0002616,2.73e-94,53;UBERON:0001017,1.21e-90,81;UBERON:0001016,3.26e-87,89;UBERON:0000955,2.28e-77,68;UBERON:0006238,2.28e-77,68;UBERON:0002780,1.77e-76,41;UBERON:0001890,1.77e-76,41;UBERON:0003080,1.77e-76,41;UBERON:0006240,1.77e-76,41;UBERON:0003528,9.10e-72,34;UBERON:0002020,9.10e-72,34;UBERON:0001893,7.59e-67,34;UBERON:0001869,1.09e-66,32;UBERON:0002791,1.64e-66,32;UBERON:0003075,2.07e-66,82;UBERON:0007284,2.07e-66,82;UBERON:0002346,8.32e-63,86;UBERON:0002619,5.38e-55,22;UBERON:0010371,5.44e-50,104;UBERON:0001950,2.67e-49,20;UBERON:0003056,1.01e-48,61;UBERON:0000956,5.93e-48,25;UBERON:0000203,5.93e-48,25;UBERON:0010314,8.01e-41,132;UBERON:0007023,5.06e-40,114;UBERON:0004121,7.18e-40,171;UBERON:0000924,7.18e-40,171;UBERON:0006601,7.18e-40,171;UBERON:0011216,9.72e-35,223;UBERON:0002420,5.17e-26,9;UBERON:0007245,5.17e-26,9;UBERON:0010009,5.17e-26,9;UBERON:0010011,5.17e-26,9;UBERON:0000454,5.17e-26,9;UBERON:0003076,2.62e-25,15;UBERON:0003057,2.62e-25,15;UBERON:0000125,2.95e-25,9;UBERON:0002308,2.95e-25,9;UBERON:0000025,2.42e-24,192;UBERON:0009663,3.83e-20,7;UBERON:0000200,3.09e-18,6;UBERON:0004733,3.66e-18,12;UBERON:0002028,3.66e-18,12;UBERON:0007277,3.66e-18,12;UBERON:0004111,4.03e-17,240;UBERON:0004732,1.24e-16,13;UBERON:0002298,1.28e-16,6;UBERON:0001871,4.28e-16,6;UBERON:0000349,6.14e-16,5;UBERON:0001872,6.02e-15,5;UBERON:0000369,5.41e-13,4;UBERON:0002435,5.41e-13,4;UBERON:0000204,5.41e-13,4;UBERON:0010082,5.41e-13,4;UBERON:0000483,1.80e-12,306;UBERON:0000119,3.10e-12,309;UBERON:0002680,2.57e-11,9;UBERON:0001895,2.57e-11,9;UBERON:0010092,2.57e-11,9;UBERON:0001894,6.82e-11,7;UBERON:0006222,6.82e-11,7;UBERON:0002021,1.27e-10,5;UBERON:0005383,2.79e-10,3;UBERON:0005382,2.79e-10,3;UBERON:0001870,3.36e-10,3;UBERON:0002240,3.24e-09,3;UBERON:0005174,3.24e-09,3;UBERON:0001137,3.24e-09,3;UBERON:0001896,3.44e-09,3;UBERON:0005290,3.44e-09,3;UBERON:0010096,3.44e-09,3;UBERON:0000988,3.97e-09,3;UBERON:0000007,1.05e-07,2;UBERON:0002771,1.39e-07,2;UBERON:0001876,1.39e-07,2;UBERON:0002702,2.45e-07,2;UBERON:0001954,2.53e-07,2;UBERON:0003022,2.53e-07,2;UBERON:0002421,2.53e-07,2;UBERON:0002600,2.53e-07,2;UBERON:0001873,3.66e-07,2;UBERON:0010122,3.66e-07,2;UBERON:0001897,4.26e-07,2;UBERON:0010225,4.26e-07,2;UBERON:0002148,8.48e-07,2;UBERON:0006331,8.48e-07,2;UBERON:0009662,8.48e-07,2 | |||
|phase1_expression=0,0.214100523890983,0,0,0,0,0,0,0,0,0,0,0,0.123766352960047,0,0,0,0,0,0,0,0,0,0.136874425072884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.09227722252426,0,0,0,0,0,0,0.569212969109448,2.93618594685469,0.764546456250458,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.33472061276467,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0.12663051166458,0.264818361626438,0.860509862246441,0.354668382198357,0,0,0.24666754841716,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.646584227275248,0,0,0,0,0,0,0.243947412259191,0,0.116193942869518,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.441463099414651,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.508189248444927,2.60279707715243,3.09315525111078,4.02039036802437,3.18969375826582,0,0,0,0,0,0,0,0,0,0,0,0,0,0.664225598535437,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215915916102139,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0.082509499920588,0,0,0,0,0,0,0,0,0,0,0.0890320356467374,0,0,0,0,0,0.31481234683064,0,0,0,0,0,0,0,0.316379424718726,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.282810863907425,0,0,0,0.438450885253763,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.11481905075431,0,0,0.637705090915289,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439524537815682,0,0,0,0,0,0,6.95903353436409,6.47079315488359,0,0,0,0,0.552567831062295,0.755798243562828,0,0,0,0,0,0,0.197286811273867,0,0,0.969332746095218,3.15411533750294,1.99613798001194,0,0,0,0,0,0,0.344743373241465,0,1.73624994933292,1.77148277162768,13.0244153715441,1.52581736317083,9.17807857429164,5.31985714116385,1.31631238292384,0,0.139423744278603,0.153900517007594,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.210998064528027,0,0,0,0,0.0884575645033392,0,0,0,0,0.539209063845416,0,1.40558667435203,0,0,0,0.394584402849391,0,10.1004011338062,0.379119477770928,0.300646838828985,0,0,0,0,0,0,0,0,0,0,0,0.171986032471617,0,0,0,0.290967049465258,0,0.677942222341597,0,0,4.7483096966909,0,0,0.213452994739353,0,0,0,0.686379991447858,0,0,0,0,0,0.101998217636322,0,2.40168115483916,1.64286454670392,0,0,0,0,0.229160424011684,0,0,0.429226048136571,0,0.134366944973453,0,0,0,0,0,0,0.0846733320657845,3.97614844904652,4.90332262001672,0,0,0,0,0,2.91597871958518,0,0.472834243795189,0.0524545881349981,0,0,0,0.714695326373367,0,0,0,0,0,0,0,0,0,0,0,1.68067843270016,3.9669780522807,0,0,0,0.157204305099666,0,0,0,0,0,0,0,0,0,0,3.54427271986794,8.54183854313742,5.88397374320549,1.72022758707021,2.77322628842131,1.8628920882415,0.138348634936231,0,0,0,0,0,0.869526171664951,0,0,0,0,0.251567901752575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.463044948647668,0,0,0,0,0,0,0,0,0,0,5.66859588222096,0,0,0,0,0,0,0,0,0.172214979660816,0.567515953566836,1.10463570151104,0,0.622077260032973,1.79052119825112,0.431299245586727,0,1.85656384926424,0,0,0,0,0,0,1.60114149657094,0,3.9811912055916,3.53260738030527,8.5017945795351,4.46974805360024,3.48697819209284,14.1160149884162,0.96820153449905,3.87541549516443,0,0,0,0,0,0,0,0,0.150420656698515,0,0,0,0,0,1.82351478469666,1.56215619722769,4.75379631952723,1.77564268542939,15.3152946525101,0,0.992422356778588,0,0,0.535701835878287,0.336283722218824,7.28358725083958,10.4724608021597,0,0.345701962667338,0,1.4953341254903,2.30204707469972,0,0,0,15.7115589916002,0,0,0.431855182437243,0,0,0,0.348724276104376,0,0,0,0,0,0,0,0,0.423387050190929,0,0,0,0,0,0,0,0.102662806856247,0,0,0.701818390386317,5.76957247967968,0,0.22589216407792,0.219881033490858,2.11347980993343,0.0771741581079447,0,3.29222107453066,0,4.00650130072764,1.76677620403451,2.67341760294377,2.113278637917,0,0,0,0,0,0,0,0,0,1.29005624836306,0,1.76777874496378,9.16336449714793,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0.151557396436479,0.535928260312357,4.1458471972939,2.68925789240928,0,0.23806443146374,0.0645889098360061,0.124149428591716,0,0.0636471582781649,1.0105859447911,0,0,0.134704106029175,0,0,0,0,0,0,0,0.611207220914332,0,0,0.402547587182052,0 | |||
|short_description=p3@SCN3A | |||
}} |
Revision as of 06:23, 21 January 2014
Short description: | p3@SCN3A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SCN3A_5end |
Coexpression cluster: | C2665_occipital_parietal_normal_temporal_duodenum_somatostatinoma_putamen |
Association with transcript: | -9bp_to_ENST00000360093, NM_001081676, NM_001081677, NM_006922, uc002ucx.2, uc002ucy.2, uc002ucz.2_5end |
EntrezGene: | SCN3A |
HGNC: | 10590 |
UniProt: | Q9NY46Q9C007 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data