FFCP PHASE1:Hg19::chr2:45168997..45169020,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6496 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10889 | |||
|TSSclassifier=strong | |||
|UniProt=O95343 | |||
|association_with_transcript=-16bp_to_NM_005413,uc002run.1_5end | |||
|coexpression_cluster_id=C1905 | |||
|description=CAGE_peak_4_at_SIX3_5end | |||
|id=chr2:45168997..45169020,+ | |||
|ontology_enrichment_celltype=CL:0000306!9.07e-07!4;CL:0002222!9.07e-07!4;CL:0002224!9.07e-07!4 | |||
|ontology_enrichment_celltype_v019=CL:0000306;2.82e-11;4!CL:0002222;2.82e-11;4!CL:0002224;2.82e-11;4!CL:0000333;2.38e-09;5!CL:0002586;2.44e-09;3!CL:0000064;4.28e-09;3!CL:0000067;4.28e-09;3!CL:0005012;4.28e-09;3!CL:0002304;4.28e-09;3!CL:0000149;4.34e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000306,2.83e-11,4;CL:0002222,2.83e-11,4;CL:0002224,2.83e-11,4;CL:0002586,2.45e-09,3;CL:0000064,3.53e-09,3;CL:0000067,3.53e-09,3;CL:0005012,3.53e-09,3;CL:0002304,3.53e-09,3;CL:0000149,4.35e-07,4 | |||
|ontology_enrichment_development_v019=UBERON:0003056;2.85e-09;3!UBERON:0010122;2.11e-07;2 | |||
|ontology_enrichment_disease=DOID:171!5.21e-09!10;DOID:0050687!5.52e-07!143 | |||
|ontology_enrichment_disease_v019=DOID:171;3.66e-16;10!DOID:169;1.83e-11;6 | |||
|ontology_enrichment_disease_v019_2=DOID:171,3.75e-16,10;DOID:169,1.78e-11,6;DOID:0050687,3.23e-09,143 | |||
|ontology_enrichment_uberon=UBERON:0002346!1.75e-32!90;UBERON:0003056!2.44e-31!61;UBERON:0003075!5.31e-30!86;UBERON:0007284!5.31e-30!86;UBERON:0000073!1.19e-25!94;UBERON:0001016!1.19e-25!94;UBERON:0002780!2.19e-21!41;UBERON:0001890!2.19e-21!41;UBERON:0006240!2.19e-21!41;UBERON:0000924!9.16e-21!173;UBERON:0006601!9.16e-21!173;UBERON:0003080!1.15e-20!42;UBERON:0005743!3.06e-20!86;UBERON:0002616!3.27e-19!59;UBERON:0001049!5.95e-19!57;UBERON:0005068!5.95e-19!57;UBERON:0006241!5.95e-19!57;UBERON:0007135!5.95e-19!57;UBERON:0004121!6.58e-19!169;UBERON:0000955!6.43e-17!69;UBERON:0006238!6.43e-17!69;UBERON:0001017!1.22e-16!82;UBERON:0000033!2.31e-16!123;UBERON:0007625!4.89e-16!11;UBERON:0000153!1.25e-15!129;UBERON:0007811!1.25e-15!129;UBERON:0002791!1.47e-14!33;UBERON:0001893!5.97e-14!34;UBERON:0002104!6.70e-14!21;UBERON:0001869!9.67e-14!32;UBERON:0000970!7.72e-13!20;UBERON:0002020!1.35e-12!34;UBERON:0003528!1.35e-12!34;UBERON:0000019!1.15e-11!19;UBERON:0000047!1.15e-11!19;UBERON:0004088!1.15e-11!19;UBERON:0003072!1.15e-11!19;UBERON:0003071!1.15e-11!19;UBERON:0004128!1.15e-11!19;UBERON:0001032!1.42e-11!24;UBERON:0004456!1.42e-11!24;UBERON:0000020!1.33e-10!23;UBERON:0001894!1.52e-10!7;UBERON:0006222!1.52e-10!7;UBERON:0001456!3.49e-10!21;UBERON:0009663!8.97e-09!7;UBERON:0007023!9.67e-09!115;UBERON:0000966!1.18e-08!5;UBERON:0005388!1.18e-08!5;UBERON:0001802!1.18e-08!5;UBERON:0002420!1.90e-08!9;UBERON:0007245!1.90e-08!9;UBERON:0010009!1.90e-08!9;UBERON:0010011!1.90e-08!9;UBERON:0000454!1.90e-08!9;UBERON:0000956!5.91e-08!25;UBERON:0000203!5.91e-08!25;UBERON:0000369!1.11e-07!4;UBERON:0002435!1.11e-07!4;UBERON:0000204!1.11e-07!4;UBERON:0010082!1.11e-07!4;UBERON:0000010!1.47e-07!8;UBERON:0005085!2.74e-07!29;UBERON:0000488!8.18e-07!4;UBERON:0010077!9.07e-07!4;UBERON:0005389!9.07e-07!4;UBERON:0000484!9.07e-07!4;UBERON:0002546!9.07e-07!4;UBERON:0000965!9.07e-07!4;UBERON:0001803!9.07e-07!4;UBERON:0003073!9.07e-07!4;UBERON:0005426!9.07e-07!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0007625;1.93e-28;11!UBERON:0002104;2.17e-26;21!UBERON:0000970;2.28e-24;20!UBERON:0001032;1.33e-22;24!UBERON:0004456;1.33e-22;24!UBERON:0000019;3.72e-22;19!UBERON:0000047;3.72e-22;19!UBERON:0004088;3.72e-22;19!UBERON:0010230;3.72e-22;19!UBERON:0000020;1.01e-20;23!UBERON:0001456;9.74e-20;21!UBERON:0009663;2.02e-15;7!UBERON:0000966;8.79e-15;5!UBERON:0005388;8.79e-15;5!UBERON:0001802;8.79e-15;5!UBERON:0000369;5.93e-13;4!UBERON:0002435;5.93e-13;4!UBERON:0000204;5.93e-13;4!UBERON:0002420;8.32e-12;9!UBERON:0000125;8.32e-12;9!UBERON:0007245;8.32e-12;9!UBERON:0002308;8.32e-12;9!UBERON:0010009;8.32e-12;9!UBERON:0010011;8.32e-12;9!UBERON:0000454;8.32e-12;9!UBERON:0010371;1.32e-11;31!UBERON:0001801;2.81e-11;14!UBERON:0010077;2.82e-11;4!UBERON:0005389;2.82e-11;4!UBERON:0000484;2.82e-11;4!UBERON:0000965;2.82e-11;4!UBERON:0001803;2.82e-11;4!UBERON:0000488;3.06e-11;4!UBERON:0001894;2.50e-10;7!UBERON:0005383;2.89e-10;3!UBERON:0005382;2.89e-10;3!UBERON:0000013;2.38e-09;5!UBERON:0002410;2.38e-09;5!UBERON:0001781;2.44e-09;3!UBERON:0001782;2.44e-09;3!UBERON:0001778;4.28e-09;3!UBERON:0001775;4.28e-09;3!UBERON:0000010;1.61e-07;8!UBERON:0002203;1.70e-07;6!UBERON:0001768;1.70e-07;6!UBERON:0002200;1.70e-07;6!UBERON:0001873;2.11e-07;2!UBERON:0001264;2.13e-07;10!UBERON:0000007;2.77e-07;2!UBERON:0002075;5.22e-07;18!UBERON:0001875;7.09e-07;2!UBERON:0006514;7.09e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007625,1.48e-28,11;UBERON:0000970,1.70e-26,21;UBERON:0002104,1.70e-26,21;UBERON:0003056,2.06e-24,61;UBERON:0000019,3.15e-24,20;UBERON:0000047,3.15e-24,20;UBERON:0010312,3.15e-24,20;UBERON:0004088,3.15e-24,20;UBERON:0010230,3.15e-24,20;UBERON:0003072,3.15e-24,20;UBERON:0004128,3.15e-24,20;UBERON:0003071,3.15e-24,20;UBERON:0000020,1.08e-22,24;UBERON:0001032,1.08e-22,24;UBERON:0004456,1.08e-22,24;UBERON:0001456,1.06e-21,22;UBERON:0002346,2.94e-21,86;UBERON:0003075,7.14e-18,82;UBERON:0007284,7.14e-18,82;UBERON:0000966,6.70e-17,6;UBERON:0005388,6.70e-17,6;UBERON:0001802,6.70e-17,6;UBERON:0009663,2.05e-15,7;UBERON:0010371,5.30e-15,104;UBERON:0005085,2.19e-14,31;UBERON:0000369,5.77e-13,4;UBERON:0002435,5.77e-13,4;UBERON:0000204,5.77e-13,4;UBERON:0010082,5.77e-13,4;UBERON:0004121,1.93e-12,171;UBERON:0000924,1.93e-12,171;UBERON:0006601,1.93e-12,171;UBERON:0002420,8.41e-12,9;UBERON:0000125,8.41e-12,9;UBERON:0007245,8.41e-12,9;UBERON:0002308,8.41e-12,9;UBERON:0010009,8.41e-12,9;UBERON:0010011,8.41e-12,9;UBERON:0000454,8.41e-12,9;UBERON:0001781,1.77e-11,4;UBERON:0000488,2.33e-11,4;UBERON:0001801,2.43e-11,14;UBERON:0010314,2.67e-11,132;UBERON:0010077,2.83e-11,4;UBERON:0005389,2.83e-11,4;UBERON:0000484,2.83e-11,4;UBERON:0002546,2.83e-11,4;UBERON:0000965,2.83e-11,4;UBERON:0001803,2.83e-11,4;UBERON:0003073,2.83e-11,4;UBERON:0005426,2.83e-11,4;UBERON:0001894,2.39e-10,7;UBERON:0006222,2.39e-10,7;UBERON:0005383,2.76e-10,3;UBERON:0005382,2.76e-10,3;UBERON:0000013,2.26e-09,5;UBERON:0002410,2.26e-09,5;UBERON:0001782,2.45e-09,3;UBERON:0005424,2.45e-09,3;UBERON:0001778,3.53e-09,3;UBERON:0001775,3.53e-09,3;UBERON:0001444,6.72e-08,49;UBERON:0002203,1.42e-07,6;UBERON:0001768,1.42e-07,6;UBERON:0002200,1.42e-07,6;UBERON:0000010,1.56e-07,8;UBERON:0002780,1.62e-07,41;UBERON:0001890,1.62e-07,41;UBERON:0003080,1.62e-07,41;UBERON:0006240,1.62e-07,41;UBERON:0001016,2.07e-07,89;UBERON:0001873,2.08e-07,2;UBERON:0010122,2.08e-07,2;UBERON:0001264,2.21e-07,10;UBERON:0000007,2.90e-07,2;UBERON:0002075,5.54e-07,18;UBERON:0001875,7.41e-07,2;UBERON:0006514,7.41e-07,2 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.572471974262113,0.410623275218653,0.251085279189606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.306083892370903,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201606743224732,0,0,0,0,0,0,0,0,0,0,5.10488012685966,1.99556457716308,5.27008714158756,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.302714855289863,0,0,0,0.570471821544449,0,0,0,0,0,0,0.206651562351531,0,0,0,0,0,0,0,0,0,0.150238058906597,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0.795178609928912,0.580969714347592,0.725627385107593,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.54411029268673,0,0,0,0,0,0,4.3299402607582,4.9850074139283,2.46558257895225,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144119953416961,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.410952645100767,0,0,0.197030760201927,0,0,0,0,0.773288812777695,0.837581326671744,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821271560138091,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.59030175162945,5.9042636225947,4.22991913063594,0,0.640986253728404,1.07262349896764,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243713489631284,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.45040215981032,0,0,0,1.11598390910176,0,0,0,0,0,0,0,0,0,0,0,0,0,0.307240764308458,0,0.166849141711909,0,0,0,0,0,0,0,0,11.8933311314523,0,0,0,0,0,0,0.422008249231538,0,0,0,0,0,5.03865495708552,0,0.123084805461069,0,0,0,0,0,0,0,0,0.278304294485554,0,0,0.0874599999961957,0,0,0,0,0,0.583209226766509,5.55599983786535,27.457982960229,11.9390474239154,1.52581736317083,0.884634079449797,0.295547618953547,0.438770794307945,0,0,0.153900517007594,0,0,0.0897576444097721,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.216388639742091,0,0.0884575645033392,0,5.33738031625119,10.5029348104527,9.92008520301826,0.404406797884062,0,4.91955336023212,0,0,0.485560759068186,0,0,0,2.14834370736859,0.150323419414493,0,19.9396161812156,6.95083107338548,10.6737192258457,15.5314158704846,0,1.24807205711825,0,0,0,0,0,0,0,0,0.0969890164884194,0,3.84167259326905,0,0,0.0633107959558787,3.12882212375685,0,0,0,2.4495370916198,5.95590300062761,3.77508995296322,0,0,0,0,0,0,0,15.0105072177447,2.32739144116388,0,0,0,0,0,0,0.199679000498991,0,0,0,0,0,0,0,0,0,0,0.795229689809303,0.272406812223151,0,0,0,0,0,0.425246896606173,0,0.0788057072991982,0,2.00640639386872,0.179287339332845,0,0,0,0,0,0,0,1.19730191562487,0.246277562248017,0,0,0,0,0,0,0,0.704815022316672,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1251909307065,0,0.665574309221114,0.0620964029413835,0,0,0,0,0.470531639396343,4.68334905806882,1.01444720027578,0.149254802886874,0,0,0,0,0.889811221596536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.73357847366573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0.327609848846413,0,0,3.9997479170986,1.28030075632969,0,0,0.184105950251841,0.839277046316667,1.86623178009892,7.4178735356118,0,1.57265941855896,12.1222698393135,3.56438312903453,1.06287460050841,1.85903646388503,2.23457967189298,0,0,1.60114149657094,0,0,6.35869328454949,0,0,0.205116364240755,0,0.0691572524642179,0.968853873791107,1.42769420259154,0,0,0,0,0,0,2.3869946653953,0,3.63069123666336,0,0,0,0,0,0,0.206686796501184,0.0634158101939068,3.82882366312754,0,0,0,0.255524855279191,0.535701835878287,0.672567444437648,9.71144966778611,14.1150558637805,0,0,0,0,0,1.30013224972365,1.33477682270483,0,14.9259810420202,0,0,0,0,7.00470132931232,8.69074864529996,0,14.4302366011141,0,0,0,0,0,0.591660003652827,0.596493833314104,0,0,0.62041277132864,0,0,0,0,0,0,0,0,0.467878926924211,0,3.44868263254949,0,4.06779911958088,0.150962843566674,0,0,0,0,1.41405928260976,0,0,0,0,0,0,0,0.357107877211315,0,0,0,0,0,2.36657343289777,0.0679914901909147,0,0,0,0.462175628631418,0,0,0,0.126698501011437,0,0,0,0,0,0,2.48750831837634,3.51672185930444,0,0,0,0.0620747142958579,0,0,0,0,0,0,0,0,1.46525883499754,0.213454691755431,0,2.0659796484515,0,0,0,0,0,1.60284246151616 | |||
|short_description=p4@SIX3 | |||
}} |
Revision as of 02:54, 21 January 2014
Short description: | p4@SIX3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_SIX3_5end |
Coexpression cluster: | C1905_caudate_putamen_embryonic_pituitary_globus_cord_rhabdomyosarcoma |
Association with transcript: | -16bp_to_NM_005413, uc002run.1_5end |
EntrezGene: | SIX3 |
HGNC: | 10889 |
UniProt: | O95343 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
crystallin accumulating cell | 2.83e-11 | 4 |
vertebrate lens cell | 2.83e-11 | 4 |
lens epithelial cell | 2.83e-11 | 4 |
retinal pigment epithelial cell | 2.45e-09 | 3 |
ciliated cell | 3.53e-09 | 3 |
ciliated epithelial cell | 3.53e-09 | 3 |
multi-ciliated epithelial cell | 3.53e-09 | 3 |
non-pigmented ciliary epithelial cell | 3.53e-09 | 3 |
visual pigment cell | 4.35e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
neuroectodermal tumor | 3.75e-16 | 10 |
neuroendocrine tumor | 1.78e-11 | 6 |
cell type cancer | 3.23e-09 | 143 |