FFCP PHASE1:Hg19::chr17:40575264..40575282,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=284119 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9688 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=0bp_to_uc002hzo.2,uc010wgi.1_5end | |||
|coexpression_cluster_id=C3236 | |||
|description=CAGE_peak_1_at_PTRF_5end | |||
|id=chr17:40575264..40575282,- | |||
|ontology_enrichment_celltype=CL:0000222!1.72e-32!119;CL:0000055!9.43e-32!180;CL:0000220!1.23e-24!246;CL:0002321!3.62e-24!248;CL:0000057!4.42e-19!75;CL:0000183!5.88e-17!59;CL:0000680!2.66e-16!57;CL:0000056!2.66e-16!57;CL:0000355!2.66e-16!57;CL:0000187!7.13e-16!54;CL:0000213!1.11e-15!57;CL:0000215!1.11e-15!57;CL:0000192!4.62e-15!42;CL:0000514!4.62e-15!42;CL:0000359!2.87e-13!32;CL:0000393!4.19e-13!60;CL:0000211!4.19e-13!60;CL:0002078!5.46e-12!44;CL:0000115!1.28e-11!35;CL:0000144!3.66e-11!625;CL:0002139!4.61e-11!24;CL:0002371!3.79e-10!591;CL:0000071!6.80e-10!18;CL:0002546!6.80e-10!18;CL:0000076!2.07e-09!62;CL:0000548!6.51e-09!679;CL:0000004!6.51e-09!679;CL:0000255!6.51e-09!679;CL:0000012!1.37e-08!682;CL:0002620!1.63e-07!23;CL:0000066!2.80e-07!254 | |||
|ontology_enrichment_celltype_v019=CL:0000359;1.83e-12;32!CL:0000192;3.25e-11;43!CL:0002139;4.11e-11;24!CL:0000115;3.72e-10;36!CL:0000071;6.24e-10;18!CL:0000213;1.55e-09;58!CL:0000215;1.55e-09;58!CL:0000187;4.25e-09;55!CL:0000057;1.39e-08;73!CL:0002078;1.85e-08;45!CL:0002620;1.56e-07;23!CL:0000393;4.38e-07;61!CL:0000211;4.38e-07;61 | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,5.22e-33,121;CL:0002321,1.03e-24,250;CL:0000057,1.04e-19,76;CL:0000680,1.98e-16,58;CL:0000056,1.98e-16,58;CL:0000355,1.98e-16,58;CL:0000187,5.39e-16,55;CL:0000213,5.48e-16,58;CL:0000215,5.48e-16,58;CL:0000192,3.76e-15,43;CL:0000514,3.76e-15,43;CL:0000359,2.53e-13,32;CL:0000393,3.08e-13,61;CL:0000211,3.08e-13,61;CL:0002078,2.84e-12,45;CL:0000115,6.80e-12,36;CL:0002139,4.16e-11,24;CL:0000071,6.22e-10,18;CL:0002546,6.22e-10,18;CL:0000076,9.73e-10,63;CL:0002620,1.53e-07,23;CL:0000066,4.42e-07,253 | |||
|ontology_enrichment_development_v019=CL:0000514;3.25e-11;43!CL:0002546;6.24e-10;18!CL:0000222;1.50e-09;121!CL:0000355;4.79e-09;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002049!7.77e-28!79;UBERON:0007798!7.77e-28!79;UBERON:0000055!7.97e-26!69;UBERON:0004872!1.98e-25!84;UBERON:0001981!3.09e-24!60;UBERON:0007500!3.09e-24!60;UBERON:0004537!3.09e-24!60;UBERON:0006965!3.09e-24!60;UBERON:0003914!3.48e-22!118;UBERON:0005256!1.09e-20!143;UBERON:0000914!5.57e-20!83;UBERON:0002329!5.57e-20!83;UBERON:0003077!5.57e-20!83;UBERON:0003059!5.57e-20!83;UBERON:0007282!5.57e-20!83;UBERON:0009618!5.57e-20!83;UBERON:0007285!5.57e-20!83;UBERON:0001637!1.12e-19!42;UBERON:0003509!1.12e-19!42;UBERON:0004572!1.12e-19!42;UBERON:0000486!1.76e-19!82;UBERON:0000490!1.43e-18!138;UBERON:0004290!5.42e-18!70;UBERON:0002100!9.79e-18!216;UBERON:0001009!4.57e-17!113;UBERON:0004535!4.81e-17!110;UBERON:0000119!1.47e-16!312;UBERON:0000475!2.35e-16!365;UBERON:0000483!4.46e-16!309;UBERON:0001134!9.21e-16!61;UBERON:0002036!9.21e-16!61;UBERON:0003082!9.21e-16!61;UBERON:0002385!1.00e-15!63;UBERON:0001015!1.00e-15!63;UBERON:0000383!1.00e-15!63;UBERON:0004573!1.04e-14!33;UBERON:0004571!1.04e-14!33;UBERON:0000468!1.50e-13!659;UBERON:0003104!2.08e-13!238;UBERON:0009142!2.08e-13!238;UBERON:0000477!4.45e-13!286;UBERON:0003102!6.18e-12!95;UBERON:0000481!1.10e-11!347;UBERON:0000467!1.74e-11!625;UBERON:0000480!2.66e-11!626;UBERON:0004111!5.33e-11!241;UBERON:0001986!6.80e-10!18;UBERON:0004638!6.80e-10!18;UBERON:0004852!6.80e-10!18;UBERON:0006914!9.63e-10!25;UBERON:0000487!1.06e-09!22;UBERON:0002199!4.20e-09!45;UBERON:0002416!4.20e-09!45;UBERON:0000947!1.26e-08!21;UBERON:0010191!1.26e-08!21;UBERON:0000926!3.11e-08!448;UBERON:0004120!3.11e-08!448;UBERON:0006603!3.11e-08!448;UBERON:0000025!8.34e-08!194;UBERON:0002097!1.50e-07!40 | |||
|ontology_enrichment_uberon_v019=UBERON:0001637;1.53e-14;42!UBERON:0003509;1.53e-14;42!UBERON:0004572;1.53e-14;42!UBERON:0007500;7.51e-14;56!UBERON:0001981;7.51e-14;56!UBERON:0004537;7.51e-14;56!UBERON:0004573;2.20e-13;33!UBERON:0004571;2.20e-13;33!UBERON:0000055;1.32e-12;65!UBERON:0002049;1.61e-11;75!UBERON:0007798;1.61e-11;75!UBERON:0003914;2.34e-11;74!UBERON:0004638;6.24e-10;18!UBERON:0001986;6.24e-10;18!UBERON:0004852;6.24e-10;18!UBERON:0006914;8.86e-10;25!UBERON:0000487;9.78e-10;22!UBERON:0000947;1.17e-08;21!UBERON:0010191;1.17e-08;21!UBERON:0000490;6.54e-08;33!UBERON:0000025;4.55e-07;93 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002049,2.06e-27,78;UBERON:0007798,2.06e-27,78;UBERON:0000055,2.14e-25,68;UBERON:0004872,4.61e-25,83;UBERON:0007500,8.43e-24,59;UBERON:0001981,8.43e-24,59;UBERON:0004537,8.43e-24,59;UBERON:0006965,8.43e-24,59;UBERON:0003914,3.55e-22,117;UBERON:0007503,2.96e-21,78;UBERON:0000490,4.39e-21,148;UBERON:0001637,9.23e-20,42;UBERON:0003509,9.23e-20,42;UBERON:0004572,9.23e-20,42;UBERON:0000486,1.20e-19,83;UBERON:0005256,2.76e-18,122;UBERON:0002329,3.85e-18,71;UBERON:0003059,3.85e-18,71;UBERON:0007282,3.85e-18,71;UBERON:0004290,3.85e-18,71;UBERON:0009618,3.85e-18,71;UBERON:0007524,7.31e-18,73;UBERON:0003104,7.67e-18,160;UBERON:0009142,7.67e-18,160;UBERON:0003077,1.11e-17,72;UBERON:0007285,1.11e-17,72;UBERON:0001009,5.27e-17,112;UBERON:0004535,5.54e-17,109;UBERON:0000119,1.62e-16,309;UBERON:0000483,4.92e-16,306;UBERON:0001134,6.75e-16,62;UBERON:0002036,6.75e-16,62;UBERON:0003082,6.75e-16,62;UBERON:0002385,7.31e-16,64;UBERON:0001015,7.31e-16,64;UBERON:0000383,7.31e-16,64;UBERON:0002100,1.04e-15,199;UBERON:0004573,9.03e-15,33;UBERON:0004571,9.03e-15,33;UBERON:0003102,1.29e-12,99;UBERON:0004111,1.08e-10,240;UBERON:0004638,6.22e-10,18;UBERON:0001986,6.22e-10,18;UBERON:0004852,6.22e-10,18;UBERON:0006914,8.82e-10,25;UBERON:0000487,9.71e-10,22;UBERON:0002199,2.48e-09,46;UBERON:0002416,2.48e-09,46;UBERON:0000947,1.17e-08,21;UBERON:0010191,1.17e-08,21;UBERON:0000926,5.73e-08,315;UBERON:0004120,5.73e-08,315;UBERON:0006603,5.73e-08,315;UBERON:0002097,9.05e-08,41;UBERON:0000025,2.24e-07,192;UBERON:0004923,9.89e-07,66 | |||
|phase1_expression=490.349945651232,375.532318904784,437.522470313894,452.33130855615,286.949022622319,423.084184188679,473.670772174741,349.972809878464,256.223101264042,369.338106561768,520.559671307431,192.228407474552,209.430980713392,256.938948745057,251.530608177488,212.454746278761,230.229309705159,260.720702268292,214.690431467823,148.360874982529,295.801002304167,263.92887548455,108.769675109802,177.115506044312,232.253883250385,0,0.0821005894499457,0.0787107813136792,0.393364276848904,0,6.03782880932696,234.452412242126,299.097477346802,152.708406198883,0,0,26.1304391008014,4.9859586767869,0.200544447470142,0,0.223915474239924,0.647787332037959,0,0.145398238779565,3.40088349319928,1.21292030593908,0.232429036905685,2.05583944010913,1.23882548358041,0.863077176966451,1.0246428261164,1.41889337933151,0.344745680736619,0,0,0.188242339542605,1.09162460023138,0.224723484445085,0,1.60464513538047,0.639337125799041,0,0.598390972864896,0.426224750532694,0.580418477257168,0,0,3.51748131359441,2.60741459210101,2.82345498116652,9.6863920421339,0,0.316462387440884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,33.0428321447565,7.28661131875997,16.5931973408299,0.196709770113833,0,0.411202997999018,0,0,0,0,0.222820913770347,0.294605907474837,0.443067789167242,0,0.128091319725675,0.390178042679635,0.822189523018381,0,0,0,0.267540828089713,0,0,0,0,0,0,0.651083453856419,0,0.301150238155546,0.383959833463255,0,0,0,0,0.267440195783507,0.144824403882799,236.492660324543,220.660582842496,362.234637702721,361.439152384566,707.38779190724,440.767957197787,60.4417319758835,201.953471175594,223.1021685072,331.041990411608,285.990062216818,102.098189350467,357.009382526691,244.346947794939,2.27183175558278,2.61194605948901,25.7938443406598,0,0,0,745.160265217777,590.120932242801,636.30853944672,678.934838250736,566.743738319583,594.530088632486,623.640980145843,552.495031104025,367.150783092685,319.992905803025,391.147266912982,358.848433899138,590.386117209022,300.380736642575,578.441350787576,350.501433515013,255.289896675955,263.285641370007,568.804724998427,883.766329057928,705.693117619929,0,0,418.21419600469,475.105185820725,402.051874535041,337.908229435334,246.392657223231,330.550932208869,426.114976108153,731.230620748479,553.521978648107,205.088072328446,197.351134582093,239.962073770557,170.277106100548,178.6145365888,239.945146197808,176.994763562792,442.686133518493,367.942651518534,171.336933521253,190.200709632555,207.024489079114,245.393313848382,260.285918383636,228.246650617266,339.768817182667,370.15859313,399.560837890794,743.051158637991,272.872840719541,236.724239597756,288.700808334519,367.424268677261,549.226130071843,313.096114761348,346.989048286504,509.645954992057,430.318138469413,424.075734220283,456.73864824046,342.340502130094,511.931753070665,538.808299079952,367.594851621478,322.906235104212,537.179071591476,452.977551218755,188.640948307553,453.702259236233,426.382879699374,593.462073086707,298.39475728413,310.930577473551,248.372779606877,27.3221101730294,21.0722331631162,23.5873704025122,23.220076323443,31.2877855085779,10.5843434131991,510.0254753952,791.829594915442,607.793653950914,310.662143853394,335.673958976357,141.494932847653,154.929330181775,153.524026035778,156.286559361802,149.465298647391,142.599642085769,124.179634815511,121.657308377715,111.191928357507,442.155117320164,663.343590090299,516.113810209576,689.470856398192,1.26755034821831,2.94848165003288,23.0408063605748,0,64.4459417965915,209.827431995097,307.849550571195,272.012242883439,171.804013851477,188.602662787925,259.669219332329,344.21841392754,288.662684050547,86.4840821114073,305.73223979008,249.609588178897,293.069829460995,212.133379741577,0,0.858486162094873,1.96973604869918,5.85010662848094,8.02608276359133,226.835878248,309.927026526896,210.819569599429,134.696018145084,163.336273444847,441.656846398323,35.4717531285079,69.1180207003824,56.1859193115492,76.8159351712404,83.067521194558,49.4013617593075,112.686585539692,181.687043175573,263.451566874966,119.279891535855,164.888338756311,85.7479297891735,283.803774478108,168.716546638479,329.875609622633,241.99665189856,926.330194756376,354.181853320964,425.766924652378,453.472424933556,430.822351889088,419.873430788904,547.497577878084,182.582897901454,211.622426102663,302.129203598542,310.752319816223,192.977828167202,123.544492177615,291.793316993679,302.422110134302,436.682025483225,2.43247561282381,0,2.10833939483032,472.300590173909,419.246065794516,154.047857443976,377.734429095714,243.078489577104,199.294852086004,0,0,0.215627574859517,0.128343036279748,37.860099009147,11.712586847186,54.9035057072164,11.5586223080701,49.1212838772936,0,0,0.414415513436035,236.79457901794,246.584066882421,218.097079054587,721.45091865037,601.305692246435,541.707795641566,552.087488860657,546.21717100581,229.681579096545,185.216797613584,456.98721179238,604.362134479703,404.182574505521,162.710761851537,156.47340125775,0,0,0.213455115606889,548.357776746283,299.583791118895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| |||
|short_description=p1@PTRF | |||
}} |
Revision as of 15:28, 20 January 2014
Short description: | p1@PTRF |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PTRF_5end |
Coexpression cluster: | C3236_Mesenchymal_Endothelial_Smooth_Hair_Fibroblast_Preadipocyte_Renal |
Association with transcript: | 0bp_to_uc002hzo.2, uc010wgi.1_5end |
EntrezGene: | PTRF |
HGNC: | 9688 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 5.22e-33 | 121 |
embryonic cell | 1.03e-24 | 250 |
fibroblast | 1.04e-19 | 76 |
muscle precursor cell | 1.98e-16 | 58 |
myoblast | 1.98e-16 | 58 |
multi-potent skeletal muscle stem cell | 1.98e-16 | 58 |
muscle cell | 5.39e-16 | 55 |
lining cell | 5.48e-16 | 58 |
barrier cell | 5.48e-16 | 58 |
smooth muscle cell | 3.76e-15 | 43 |
smooth muscle myoblast | 3.76e-15 | 43 |
vascular associated smooth muscle cell | 2.53e-13 | 32 |
electrically responsive cell | 3.08e-13 | 61 |
electrically active cell | 3.08e-13 | 61 |
meso-epithelial cell | 2.84e-12 | 45 |
endothelial cell | 6.80e-12 | 36 |
endothelial cell of vascular tree | 4.16e-11 | 24 |
blood vessel endothelial cell | 6.22e-10 | 18 |
embryonic blood vessel endothelial progenitor cell | 6.22e-10 | 18 |
squamous epithelial cell | 9.73e-10 | 63 |
skin fibroblast | 1.53e-07 | 23 |
epithelial cell | 4.42e-07 | 253 |