FFCP PHASE1:Hg19::chr13:98795339..98795360,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10160 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3591 | |||
|TSSclassifier=strong | |||
|UniProt=E9PCB0,C9JME2,Q5JVI9,Q9Y4F1 | |||
|association_with_transcript=-73bp_to_ENST00000376581,ENST00000376584,ENST00000376586,NM_001001715,NM_005766,uc001vni.2,uc001vnj.2_5end | |||
|description=CAGE_peak_1_at_FARP1_5end | |||
|id=chr13:98795339..98795360,+ | |||
|ontology_enrichment_celltype=CL:0000055!4.63e-18!180;CL:0002321!5.37e-13!248;CL:0000220!1.12e-12!246;CL:1000449!3.72e-10!16;CL:1000497!8.23e-10!18;CL:0002518!8.23e-10!18;CL:1000507!3.00e-08!12;CL:1000494!3.00e-08!12;CL:0002681!3.23e-08!13;CL:0002584!3.23e-08!13;CL:0000133!3.26e-08!59;CL:0000057!4.78e-08!75;CL:0000222!8.45e-07!119;CL:0000333!9.84e-07!41 | |||
|ontology_enrichment_celltype_v019=CL:1000449;3.95e-10;15!CL:1000497;9.64e-10;17!CL:0002518;9.64e-10;17!CL:0002681;3.57e-08;12!CL:0002584;3.57e-08;12!CL:1000507;6.88e-08;10!CL:1000494;6.88e-08;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,3.02e-13,250;CL:1000449,3.99e-10,15;CL:1000497,9.62e-10,17;CL:0002518,9.62e-10,17;CL:0000057,1.70e-08,76;CL:0000133,3.07e-08,59;CL:0002681,3.60e-08,12;CL:0002584,3.60e-08,12;CL:1000507,6.88e-08,10;CL:1000494,6.88e-08,10;CL:0000222,4.39e-07,121;CL:0000333,9.40e-07,41 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!3.84e-22!365;UBERON:0000119!1.24e-21!312;UBERON:0000483!9.90e-21!309;UBERON:0000481!7.94e-20!347;UBERON:0000025!2.73e-14!194;UBERON:0000477!4.30e-14!286;UBERON:0005256!4.97e-14!143;UBERON:0000468!1.73e-13!659;UBERON:0004111!2.14e-13!241;UBERON:0002100!2.91e-13!216;UBERON:0000467!2.62e-11!625;UBERON:0000480!5.12e-11!626;UBERON:0003104!5.56e-11!238;UBERON:0009142!5.56e-11!238;UBERON:0006555!2.15e-10!17;UBERON:0005103!2.15e-10!17;UBERON:0000083!2.15e-10!17;UBERON:0009201!2.15e-10!17;UBERON:0004819!2.15e-10!17;UBERON:0006553!2.15e-10!17;UBERON:0003074!2.15e-10!17;UBERON:0003060!2.15e-10!17;UBERON:0004876!2.99e-10!20;UBERON:0004211!3.72e-10!16;UBERON:0001285!3.72e-10!16;UBERON:0007684!3.72e-10!16;UBERON:0003220!3.72e-10!16;UBERON:0004208!3.72e-10!16;UBERON:0000353!4.02e-10!17;UBERON:0000922!4.22e-10!612;UBERON:0005177!4.49e-10!107;UBERON:0000080!4.78e-10!18;UBERON:0002120!4.78e-10!18;UBERON:0004875!4.78e-10!18;UBERON:0005721!4.78e-10!18;UBERON:0005754!4.78e-10!18;UBERON:0007297!4.78e-10!18;UBERON:0000466!5.07e-10!126;UBERON:0000064!5.94e-10!219;UBERON:0003914!6.95e-10!118;UBERON:0005172!9.61e-10!55;UBERON:0005173!9.61e-10!55;UBERON:0001008!1.31e-09!45;UBERON:0000058!1.94e-09!26;UBERON:0006554!2.08e-09!44;UBERON:0009569!2.58e-09!113;UBERON:0002417!3.05e-09!61;UBERON:0000916!3.05e-09!61;UBERON:0003064!4.71e-09!37;UBERON:0000490!4.78e-09!138;UBERON:0002050!6.27e-09!605;UBERON:0005423!6.27e-09!605;UBERON:0000923!1.05e-08!604;UBERON:0005291!1.05e-08!604;UBERON:0006598!1.05e-08!604;UBERON:0002532!1.05e-08!604;UBERON:0000489!1.45e-08!32;UBERON:0004121!1.53e-08!169;UBERON:0000924!2.08e-08!173;UBERON:0006601!2.08e-08!173;UBERON:0009773!3.00e-08!12;UBERON:0001231!3.00e-08!12;UBERON:0004810!3.00e-08!12;UBERON:0003887!3.05e-08!21;UBERON:0001225!3.23e-08!13;UBERON:0008987!3.23e-08!13;UBERON:0002113!4.30e-08!27;UBERON:0003918!4.30e-08!27;UBERON:0005095!4.30e-08!27;UBERON:0007687!4.30e-08!27;UBERON:0000073!5.21e-08!94;UBERON:0001016!5.21e-08!94;UBERON:0000464!4.45e-07!104;UBERON:0001851!4.85e-07!16 | |||
|ontology_enrichment_uberon_v019=UBERON:0006555;3.95e-10;15!UBERON:0004819;3.95e-10;15!UBERON:0001285;3.95e-10;15!UBERON:0007684;3.95e-10;15!UBERON:0000353;2.07e-09;15!UBERON:0006554;2.43e-09;30!UBERON:0001008;2.43e-09;30!UBERON:0000489;2.89e-08;29!UBERON:0001225;3.57e-08;12!UBERON:0008987;3.57e-08;12!UBERON:0004211;6.88e-08;10!UBERON:0009773;6.88e-08;10!UBERON:0001231;6.88e-08;10!UBERON:0004810;6.88e-08;10!UBERON:0002113;7.52e-08;24!UBERON:0011143;7.52e-08;24!UBERON:0001851;5.69e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000119,1.98e-21,309;UBERON:0000483,1.57e-20,306;UBERON:0003104,1.35e-14,160;UBERON:0009142,1.35e-14,160;UBERON:0000025,7.76e-14,192;UBERON:0004111,3.28e-13,240;UBERON:0002100,8.70e-13,199;UBERON:0005256,9.14e-11,122;UBERON:0011216,1.06e-10,223;UBERON:0006555,2.35e-10,16;UBERON:0004819,2.35e-10,16;UBERON:0000490,2.37e-10,148;UBERON:0005177,2.39e-10,101;UBERON:0004211,3.99e-10,15;UBERON:0009773,3.99e-10,15;UBERON:0001231,3.99e-10,15;UBERON:0001285,3.99e-10,15;UBERON:0007684,3.99e-10,15;UBERON:0004208,3.99e-10,15;UBERON:0003914,9.51e-10,117;UBERON:0005172,1.27e-09,54;UBERON:0005173,1.27e-09,54;UBERON:0009569,1.65e-09,112;UBERON:0000353,2.08e-09,15;UBERON:0000922,3.49e-09,592;UBERON:0002417,4.06e-09,60;UBERON:0000916,4.06e-09,60;UBERON:0001008,1.37e-08,48;UBERON:0000489,1.88e-08,31;UBERON:0006554,2.17e-08,47;UBERON:0004121,3.20e-08,171;UBERON:0000924,3.20e-08,171;UBERON:0006601,3.20e-08,171;UBERON:0001225,3.60e-08,12;UBERON:0008987,3.60e-08,12;UBERON:0002113,5.54e-08,26;UBERON:0003918,5.54e-08,26;UBERON:0011143,5.54e-08,26;UBERON:0005095,5.54e-08,26;UBERON:0007687,5.54e-08,26;UBERON:0005423,6.40e-08,581;UBERON:0004810,6.88e-08,10;UBERON:0001016,7.96e-08,89;UBERON:0007503,3.23e-07,78;UBERON:0010314,3.31e-07,132;UBERON:0001851,6.39e-07,15 | |||
|phase1_expression=11.082381135504,14.3447351006959,10.8534891153898,21.0153926541574,29.9463933266283,9.59572376510406,25.3299878168311,14.5295570888171,12.0145388971926,44.7235764432746,132.582221914761,53.299694799762,61.1939389490012,11.7578035312044,17.2326635378516,23.5313801258121,28.3266428171269,21.9093027116212,28.3001023298494,77.3200244722228,83.028281336411,69.5869481681355,32.6309025329405,47.9060487755095,54.736590863334,6.265899271332,5.66494067204626,5.98201937983962,0,0,1.08371286321253,23.9049518364521,33.1326510656075,31.7988448743437,0,0,0,2.21598163412751,0.200544447470142,0.434021741431704,0.447830948479849,4.21061765824673,0.257575567634187,0,0,0,0.232429036905685,0.822335776043652,0,0,0,0,0,0,0,0,0.272906150057846,0,0,0,0,0,0,0,0,0,1.24564449799115,0,0,0,5.44859552370032,0,0,0.211255286311942,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.587237189370939,1.14681968437569,0,0,0,0.196709770113833,0,0,0,0,0,0,0,0,0,0,0,0,0.164437904603676,0.276350017785848,0,0,0,0,0,0.383220493601921,0,0,0,0,0,0,0,0,0,0,0,0,0,17.0664806419773,16.7675214925909,12.4026684988224,37.5896718479949,39.6056949402353,24.7687547423009,19.8821486762775,39.4174244945135,27.5096317947437,34.1463272092348,27.7557922790278,32.6137897989304,33.5151665229139,21.1347132387125,0.97364218096405,1.39303789839414,1.46253756570752,0,0,0,19.8762407366705,35.2696183993511,40.6154386880885,29.9613209219725,34.3989537692123,25.0357418165461,22.9894463190492,12.1455876809585,11.028754143288,20.4179573786449,18.9329779041299,17.4862584315258,21.7215231217871,15.8095124548724,39.6969554462062,9.91226983953285,31.8831709129161,31.4186030548469,30.6633274931766,36.0720950635889,28.9458755410043,0,0,31.3987717542625,77.5276244644697,16.3353360047308,9.1362334761121,7.74458876021797,9.930714701554,28.0338800071154,61.9144175232289,26.3934276806361,15.5605517699883,23.9784996284045,24.8462092732457,47.0721599975737,28.2326202995199,48.2702149577621,9.98912245857026,14.2617955386112,10.0130615969707,44.6251094846307,51.1518504203296,56.6016751010061,8.57447519270552,25.6723723181595,20.7684820163289,46.3321114340001,80.361752015531,69.17226350729,113.541666406966,18.5169725349473,39.0369782000528,17.7321033909877,69.3584640991724,51.1834618984363,59.7947474448255,14.9730481771228,38.3893820374165,74.3179713088615,47.896609662061,33.3101116653687,61.7284650138249,41.4801269473463,71.6549896876621,14.6835409049902,34.2003888115807,39.1272350078377,78.1503639473121,21.8222176705396,34.080920881595,53.8016204535599,42.3901480776219,7.15065156704198,2.45471508531751,8.03052867089211,29.7615842956213,37.3733946666588,28.9322917745101,35.2447587052259,26.7460101928166,31.3880528805214,56.3218316387337,51.4592750554308,66.3047622491907,12.0735661288315,10.8281922250438,13.2503616044625,13.8239445864043,14.7016728228924,13.2352767278873,12.4191283132672,13.0498840511103,12.5393116588953,11.3808449772701,9.23393176671337,55.3616590968486,119.205507732929,53.0930474617506,76.4445299204818,26.6185573125845,39.313088667105,44.3092430011053,0,19.9241270439844,26.76457840657,12.4017822511747,5.62008766288098,5.5290934826397,18.2399236962303,48.5454374912384,62.3960871167747,36.0828355063183,37.793312021875,23.1295127644569,15.3028434626738,10.1856812766854,12.9372823519527,17.3844967551041,21.4621540523718,1.23108503043699,2.10603838625314,4.45893486866185,0,1.84780341018745,0.425325291727159,7.43335738433641,7.84711633987697,22.6195780707475,0,0.792435906119034,17.0009054743433,11.5295962733569,15.5278193114447,38.6067197296388,56.1522985570668,77.363515158631,44.4788359659034,38.0461723002297,57.6658671060322,74.8865253492115,65.0360289203092,81.0885728029901,24.7150023216602,27.0177885933756,64.3781602533388,21.1325688139,69.1439103120663,125.848998662753,36.266239770962,38.2992656462851,35.7005719881573,28.7385767252877,30.9294315073123,49.3944202068461,13.0294473717494,22.7450847195229,15.8390374586686,11.4546963282643,18.3022026306062,23.9935178836937,8.51366464488333,2.51128545716063,6.32501818449095,28.0361080925152,105.672980967385,98.4194644780957,6.37037749337349,13.5614372883253,11.4599016473533,0,0,0,0.513372145118994,42.1797076209289,42.9461517730152,29.3849748855524,32.163122944195,42.7418963607619,0,0,0.414415513436035,13.9868300559819,23.5080144898048,18.1747565878823,47.417356429024,32.1172179834891,27.7556250459725,24.3654143184843,40.0258312637866,34.1111256083977,18.6251528326509,30.5543775326301,55.1263813939692,30.0617306059567,99.8585903059977,85.785855952714,0,0.215714200818617,0.213455115606889,4.85004114314015,23.3009615314696,24.7960040530338,15.3826840847642,10.7423381301644,20.2075267991813,16.5299502539854,27.632191449602,24.2889420926847,8.90508398669946,29.9166805977152,21.8400922135146,20.4496618474385,19.212413879794,31.376802184189,25.8639222126072,23.0582440848778,22.6519232782305,25.9480652852011,38.0570541134039,28.5851224611545,121.823895485001,84.2547787922298,189.028294371622,141.755047913663,86.2356808054794,44.35601978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| |||
|short_description=p1@FARP1 | |||
}} |
Revision as of 18:22, 11 January 2014
Short description: | p1@FARP1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_FARP1_5end |
Coexpression cluster: | NA |
Association with transcript: | -73bp_to_ENST00000376581, ENST00000376584, ENST00000376586, NM_001001715, NM_005766, uc001vni.2, uc001vnj.2_5end |
EntrezGene: | FARP1 |
HGNC: | 3591 |
UniProt: | E9PCB0C9JME2Q5JVI9Q9Y4F1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 3.02e-13 | 250 |
epithelial cell of nephron | 3.99e-10 | 15 |
kidney cell | 9.62e-10 | 17 |
kidney epithelial cell | 9.62e-10 | 17 |
fibroblast | 1.70e-08 | 76 |
neurectodermal cell | 3.07e-08 | 59 |
kidney cortical cell | 3.60e-08 | 12 |
renal cortical epithelial cell | 3.60e-08 | 12 |
kidney tubule cell | 6.88e-08 | 10 |
nephron tubule epithelial cell | 6.88e-08 | 10 |
mesodermal cell | 4.39e-07 | 121 |
migratory neural crest cell | 9.40e-07 | 41 |