FFCP PHASE1:Hg19::chr13:28543431..28543487,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1045 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=1806 | |||
|TSSclassifier=strong | |||
|UniProt=Q99626 | |||
|association_with_transcript=-114bp_to_NM_001265,uc001urv.2_5end | |||
|coexpression_cluster_id=C86 | |||
|description=CAGE_peak_1_at_CDX2_5end | |||
|id=chr13:28543431..28543487,- | |||
|ontology_enrichment_celltype=CL:0002178!1.44e-08!3;CL:0000039!1.44e-08!7;CL:0000586!1.44e-08!7;CL:0002322!1.18e-07!5;CL:0000066!6.66e-07!254;CL:0002563!7.07e-07!4 | |||
|ontology_enrichment_celltype_v019=CL:0002178;9.06e-14;3!CL:0002563;4.66e-11;4!CL:0002253;2.77e-10;2!CL:0002251;4.50e-10;20 | |||
|ontology_enrichment_celltype_v019_2=CL:0002178,1.08e-13,3;CL:0002563,4.67e-11,4;CL:0002253,2.77e-10,2;CL:0002251,4.77e-10,20 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:305!3.64e-18!106;DOID:3119!2.76e-16!14;DOID:0050687!4.91e-13!143;DOID:299!7.66e-10!25;DOID:162!6.07e-09!235;DOID:14566!1.54e-08!239 | |||
|ontology_enrichment_disease_v019=DOID:3119;5.38e-19;14!DOID:299;1.87e-12;25!DOID:4929;2.55e-09;2 | |||
|ontology_enrichment_disease_v019_2=DOID:3119,6.08e-19,14;DOID:299,1.79e-12,25;DOID:4929,1.77e-09,2;DOID:305,5.79e-09,106;DOID:0050687,2.23e-07,143 | |||
|ontology_enrichment_uberon=UBERON:0005409!2.93e-39!35;UBERON:0000160!5.38e-33!27;UBERON:0002108!1.53e-18!14;UBERON:0001007!5.54e-18!155;UBERON:0001555!5.54e-18!155;UBERON:0007026!5.54e-18!155;UBERON:0004921!1.66e-17!129;UBERON:0004185!1.66e-17!129;UBERON:0004119!1.70e-16!169;UBERON:0000925!1.70e-16!169;UBERON:0006595!1.70e-16!169;UBERON:0000059!4.40e-15!11;UBERON:0002114!3.85e-14!12;UBERON:0002075!4.78e-14!18;UBERON:0004907!6.23e-14!5;UBERON:0001045!2.07e-13!11;UBERON:0000077!1.75e-12!130;UBERON:0002294!8.86e-12!7;UBERON:0001173!8.86e-12!7;UBERON:0004912!8.86e-12!7;UBERON:0001052!1.72e-11!4;UBERON:0001264!2.87e-11!10;UBERON:0003922!2.87e-11!10;UBERON:0003923!2.87e-11!10;UBERON:0003924!2.87e-11!10;UBERON:0003921!2.87e-11!10;UBERON:0001155!1.05e-10!9;UBERON:0003350!8.79e-09!5;UBERON:0002323!3.89e-08!46;UBERON:0002110!8.57e-08!3;UBERON:0006242!8.57e-08!3;UBERON:0000945!8.58e-08!8;UBERON:0010039!8.58e-08!8;UBERON:0001046!1.82e-07!19;UBERON:0004458!1.99e-07!49;UBERON:0001041!5.30e-07!98;UBERON:0001242!7.07e-07!4;UBERON:0001262!7.07e-07!4;UBERON:0004786!7.07e-07!4;UBERON:0004808!7.07e-07!4;UBERON:0001277!7.07e-07!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0005409;3.69e-59;22!UBERON:0000160;1.88e-40;17!UBERON:0004921;6.42e-35;33!UBERON:0000059;8.47e-26;11!UBERON:0004907;5.57e-23;5!UBERON:0000945;4.08e-21;5!UBERON:0010039;4.08e-21;5!UBERON:0001052;9.55e-19;4!UBERON:0001155;3.91e-18;9!UBERON:0002108;7.70e-15;4!UBERON:0001264;2.01e-14;10!UBERON:0001555;2.47e-13;54!UBERON:0001242;4.66e-11;4!UBERON:0001262;4.66e-11;4!UBERON:0004786;4.66e-11;4!UBERON:0004808;4.66e-11;4!UBERON:0001277;4.66e-11;4!UBERON:0000922;8.57e-11;49!UBERON:0002075;2.24e-10;18!UBERON:0001007;4.22e-09;81!UBERON:0001041;2.23e-07;14!UBERON:0002114;8.26e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005409,9.43e-52,25;UBERON:0000160,1.61e-40,17;UBERON:0000059,8.49e-26,11;UBERON:0004907,5.46e-23,5;UBERON:0001052,9.36e-19,4;UBERON:0001155,3.97e-18,9;UBERON:0002108,6.47e-15,4;UBERON:0001264,1.56e-14,10;UBERON:0000945,5.28e-13,8;UBERON:0010039,5.28e-13,8;UBERON:0004921,1.32e-11,118;UBERON:0001242,4.67e-11,4;UBERON:0001262,4.67e-11,4;UBERON:0004786,4.67e-11,4;UBERON:0004808,4.67e-11,4;UBERON:0001277,4.67e-11,4;UBERON:0001007,1.08e-10,145;UBERON:0001555,1.08e-10,145;UBERON:0007026,1.08e-10,145;UBERON:0002075,1.77e-10,18;UBERON:0004119,3.31e-09,160;UBERON:0000925,3.31e-09,160;UBERON:0006595,3.31e-09,160;UBERON:0001046,3.82e-08,19;UBERON:0002114,7.15e-07,2 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.174129737299267,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272746120590835,0,0,0.397589304964456,1.97529702878181,1.34759371519982,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,42.1850344202879,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,32.632051389738,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.470719003883896,0,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0,0,2.45040215981032,0,0,0,0,0,0,0,0,0,0,0,2.50634477090067,0,2.24823305145179,0,0,0,0,0,0,0,0,0,0,0,0,2.61996756571508,0,0.121360521749513,0,0.852408440419239,0,0,0,0,0,0,0,0,0,30.3912307084262,13.1005028884224,0,0.492339221844278,0,0.269605053441981,0.716084698702437,0,0,0,0,0,0,0,0,0,0,0.910347586283997,0,0.709163045303809,0,0,0,0,0,0,0,0,0,0,0.83654246567162,0,0,0,0,4.67183699264635,0,0,0,0,0,0,0,0,0,0,0,0,0,11.0255395718474,831.365153889114,31.8483817945122,52.1015054924668,68.435376232566,0,0,0,0,0,0,0,0,0.242780379534093,0,18.1486074072996,0,0,1.35291077473043,0.311064574191741,1.99396161812156,1.323967823502,1.88359751044335,2.38944859545918,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.95551382734803,0.64127056201227,0.85381197895741,4.79543062997113,3.45817001169854,1.14536596165916,0.171594997861965,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.798716001995964,0,0,0,0,24.4641494007653,0,0,0,0.492137407573744,0,0,0,0.482259445395058,0,0,0,0,0,1.67717343799633,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.638341257770182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.521988583930423,0,0,0,0,0,0,0,0,0,0,0,0,0,1.36402216187572,0.930053882193542,2.45348091383766,0,1.2288645437686,0,0,0.640150378164845,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.53909170043221,0,0,0,0.690359926060101,0,0,0,3.90757005616546,0,0,2.66140955190681,0,0,0,0,0,0.548257766857182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.078493092850514,0,52.9714388663061,5.47895232305697,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.15930513953535,0.243835849964539,0,0,0,0,0,0.198950775161368,0,20.2173486849738,0,0,66.7556467633721,44.8047099033112,0,0,2.12108892391463,0.196308467114945,0,0,0,0,0,0,1.60698544745092,0,0,1.46067277649303,0,0,0,0,0,18.515939418039,0,0,0,0,0.109265571963696,0,0.713921808193872,0.534434810531121,2.29737248837112,1.0028301571695,0,0,0,0,0,0,0,0.0620747142958579,0,0,0,0,0,0,0.0717222053926763,0,0.651226148887796,0,0,1.88632924423832,0,0,0,0,0,0 | |||
|short_description=p1@CDX2 | |||
}} |
Revision as of 17:05, 11 January 2014
Short description: | p1@CDX2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CDX2_5end |
Coexpression cluster: | C86_colon_carcinoid_small_neuroectodermal_giant_large_neuroepithelioma |
Association with transcript: | -114bp_to_NM_001265, uc001urv.2_5end |
EntrezGene: | CDX2 |
HGNC: | 1806 |
UniProt: | Q99626 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of stomach | 1.08e-13 | 3 |
intestinal epithelial cell | 4.67e-11 | 4 |
epithelial cell of large intestine | 2.77e-10 | 2 |
epithelial cell of alimentary canal | 4.77e-10 | 20 |
Ontology term | p-value | n |
---|---|---|
gastrointestinal system | 9.43e-52 | 25 |
intestine | 1.61e-40 | 17 |
large intestine | 8.49e-26 | 11 |
lower digestive tract | 5.46e-23 | 5 |
rectum | 9.36e-19 | 4 |
colon | 3.97e-18 | 9 |
small intestine | 6.47e-15 | 4 |
pancreas | 1.56e-14 | 10 |
stomach | 5.28e-13 | 8 |
food storage organ | 5.28e-13 | 8 |
subdivision of digestive tract | 1.32e-11 | 118 |
intestinal mucosa | 4.67e-11 | 4 |
wall of intestine | 4.67e-11 | 4 |
gastrointestinal system mucosa | 4.67e-11 | 4 |
gastrointestinal system epithelium | 4.67e-11 | 4 |
intestinal epithelium | 4.67e-11 | 4 |
digestive system | 1.08e-10 | 145 |
digestive tract | 1.08e-10 | 145 |
primitive gut | 1.08e-10 | 145 |
viscus | 1.77e-10 | 18 |
endoderm-derived structure | 3.31e-09 | 160 |
endoderm | 3.31e-09 | 160 |
presumptive endoderm | 3.31e-09 | 160 |
hindgut | 3.82e-08 | 19 |
duodenum | 7.15e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
gastrointestinal system cancer | 6.08e-19 | 14 |
adenocarcinoma | 1.79e-12 | 25 |
tubular adenocarcinoma | 1.77e-09 | 2 |
carcinoma | 5.79e-09 | 106 |
cell type cancer | 2.23e-07 | 143 |