FFCP PHASE1:Hg19::chr1:201368476..201368498,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3898 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6472 | |||
|TSSclassifier=strong | |||
|UniProt=O00515 | |||
|association_with_transcript=170bp_to_NM_005558,uc001gwm.2,uc009wzu.1_5end | |||
|coexpression_cluster_id=C226 | |||
|description=CAGE_peak_4_at_LAD1_5end | |||
|id=chr1:201368476..201368498,- | |||
|ontology_enrichment_celltype=CL:0000066!3.85e-33!254;CL:0000223!3.07e-25!59;CL:0002076!2.45e-24!43;CL:0002251!1.25e-12!21;CL:0002368!6.97e-12!13;CL:0002159!1.09e-09!13;CL:0002202!4.20e-08!9;CL:0002632!4.20e-08!9;CL:1000507!2.40e-07!12;CL:1000494!2.40e-07!12;CL:1000449!3.46e-07!16 | |||
|ontology_enrichment_celltype_v019=CL:0002076;2.88e-20;42!CL:0002368;2.53e-14;13!CL:0002251;2.23e-13;20!CL:1000507;4.45e-11;10!CL:1000494;4.45e-11;10!CL:0002202;1.09e-09;9!CL:0002632;1.09e-09;9!CL:0002159;2.42e-09;14!CL:1000449;2.96e-08;15!CL:0000453;1.52e-07;5!CL:0000244;3.25e-07;4!CL:0000731;3.25e-07;4!CL:1000497;5.81e-07;17!CL:0002518;5.81e-07;17 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,4.92e-40,253;CL:0000223,1.15e-28,58;CL:0002076,1.14e-26,42;CL:0002368,2.89e-14,13;CL:0002251,1.65e-13,20;CL:1000507,4.33e-11,10;CL:1000494,4.33e-11,10;CL:0002202,1.17e-09,9;CL:0002632,1.17e-09,9;CL:0002159,2.53e-09,14;CL:1000449,2.89e-08,15;CL:0000453,1.58e-07,5;CL:0000244,3.21e-07,4;CL:0000731,3.21e-07,4;CL:1000497,5.69e-07,17;CL:0002518,5.69e-07,17 | |||
|ontology_enrichment_development_v019=CL:0000223;1.52e-14;58!UBERON:0009497;2.27e-08;13 | |||
|ontology_enrichment_disease=DOID:305!5.89e-16!106;DOID:1749!2.73e-12!14;DOID:0050687!8.80e-11!143;DOID:299!7.56e-09!25 | |||
|ontology_enrichment_disease_v019=DOID:1749;1.35e-14;14!DOID:299;1.01e-08;25 | |||
|ontology_enrichment_disease_v019_2=DOID:305,1.94e-16,106;DOID:1749,1.25e-14,14;DOID:0050687,4.02e-12,143;DOID:299,7.26e-09,25 | |||
|ontology_enrichment_uberon=UBERON:0004119!1.89e-30!169;UBERON:0000925!1.89e-30!169;UBERON:0006595!1.89e-30!169;UBERON:0001007!5.85e-23!155;UBERON:0001555!5.85e-23!155;UBERON:0007026!5.85e-23!155;UBERON:0004921!2.91e-21!129;UBERON:0004185!2.91e-21!129;UBERON:0000466!5.11e-21!126;UBERON:0000077!4.33e-20!130;UBERON:0000464!1.12e-16!104;UBERON:0005911!1.20e-15!82;UBERON:0001041!1.63e-14!98;UBERON:0005177!1.98e-14!107;UBERON:0001004!5.91e-13!72;UBERON:0009569!1.81e-11!113;UBERON:0006554!4.18e-11!44;UBERON:0001008!1.16e-10!45;UBERON:0002365!2.05e-10!31;UBERON:0002330!2.05e-10!31;UBERON:0000161!2.28e-10!35;UBERON:0000058!7.06e-10!26;UBERON:0002553!9.61e-10!70;UBERON:0005153!3.20e-09!37;UBERON:0000166!4.46e-09!21;UBERON:0003104!6.84e-09!238;UBERON:0009142!6.84e-09!238;UBERON:0000062!7.82e-09!511;UBERON:0005172!1.16e-08!55;UBERON:0005173!1.16e-08!55;UBERON:0002530!1.21e-08!59;UBERON:0003929!2.46e-08!54;UBERON:0000080!3.00e-08!18;UBERON:0002120!3.00e-08!18;UBERON:0004875!3.00e-08!18;UBERON:0005721!3.00e-08!18;UBERON:0005754!3.00e-08!18;UBERON:0007297!3.00e-08!18;UBERON:0003887!3.09e-08!21;UBERON:0003064!3.52e-08!37;UBERON:0000065!3.86e-08!53;UBERON:0004876!4.20e-08!20;UBERON:0005178!5.07e-08!34;UBERON:0002224!5.07e-08!34;UBERON:0000344!9.84e-08!12;UBERON:0006555!1.14e-07!17;UBERON:0005103!1.14e-07!17;UBERON:0000083!1.14e-07!17;UBERON:0009201!1.14e-07!17;UBERON:0004819!1.14e-07!17;UBERON:0006553!1.14e-07!17;UBERON:0003074!1.14e-07!17;UBERON:0003060!1.14e-07!17;UBERON:0005181!1.28e-07!35;UBERON:0005156!1.42e-07!59;UBERON:0000990!1.42e-07!59;UBERON:0009773!2.40e-07!12;UBERON:0001231!2.40e-07!12;UBERON:0004810!2.40e-07!12;UBERON:0004211!3.46e-07!16;UBERON:0001285!3.46e-07!16;UBERON:0007684!3.46e-07!16;UBERON:0003220!3.46e-07!16;UBERON:0004208!3.46e-07!16;UBERON:0002417!5.51e-07!61;UBERON:0000916!5.51e-07!61;UBERON:0003886!6.07e-07!63;UBERON:0000365!7.65e-07!5;UBERON:0000165!8.98e-07!28;UBERON:0000930!8.98e-07!28;UBERON:0005409!9.26e-07!35;UBERON:0009497!9.65e-07!25;UBERON:0000015!9.65e-07!25;UBERON:0002423!9.65e-07!25;UBERON:0006235!9.65e-07!25;UBERON:0004161!9.65e-07!25 | |||
|ontology_enrichment_uberon_v019=UBERON:0004921;9.36e-13;33!UBERON:0004211;4.45e-11;10!UBERON:0009773;4.45e-11;10!UBERON:0001231;4.45e-11;10!UBERON:0004810;4.45e-11;10!UBERON:0002365;1.25e-10;31!UBERON:0002330;1.25e-10;31!UBERON:0001555;4.59e-10;54!UBERON:0006554;6.11e-10;30!UBERON:0001008;6.11e-10;30!UBERON:0005911;2.42e-09;36!UBERON:0001007;2.95e-09;81!UBERON:0005409;7.35e-09;22!UBERON:0000344;1.33e-08;20!UBERON:0004807;2.32e-08;22!UBERON:0000161;2.35e-08;19!UBERON:0000166;2.35e-08;19!UBERON:0006555;2.96e-08;15!UBERON:0004819;2.96e-08;15!UBERON:0001285;2.96e-08;15!UBERON:0007684;2.96e-08;15!UBERON:0000365;6.01e-08;5!UBERON:0000165;8.63e-08;28!UBERON:0002423;1.68e-07;25!UBERON:0007196;1.99e-07;15!UBERON:0001558;1.99e-07;15!UBERON:0000160;2.10e-07;17!UBERON:0001041;3.74e-07;14!UBERON:0000486;4.33e-07;12!UBERON:0005178;4.67e-07;34!UBERON:0002224;4.67e-07;34!UBERON:0004119;5.04e-07;158 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,1.32e-29,160;UBERON:0000925,1.32e-29,160;UBERON:0006595,1.32e-29,160;UBERON:0001007,2.06e-21,145;UBERON:0001555,2.06e-21,145;UBERON:0007026,2.06e-21,145;UBERON:0004921,3.13e-20,118;UBERON:0005177,2.92e-15,101;UBERON:0001041,5.22e-14,87;UBERON:0005911,1.21e-13,82;UBERON:0006554,1.48e-13,47;UBERON:0001008,4.26e-13,48;UBERON:0001004,5.57e-12,74;UBERON:0009569,1.16e-11,112;UBERON:0004810,4.33e-11,10;UBERON:0002365,5.73e-11,31;UBERON:0002330,5.73e-11,31;UBERON:0000166,2.29e-09,22;UBERON:0005172,4.97e-09,54;UBERON:0005173,4.97e-09,54;UBERON:0000161,7.34e-09,36;UBERON:0006555,7.44e-09,16;UBERON:0004819,7.44e-09,16;UBERON:0000344,1.14e-08,20;UBERON:0004211,2.89e-08,15;UBERON:0009773,2.89e-08,15;UBERON:0001231,2.89e-08,15;UBERON:0001285,2.89e-08,15;UBERON:0007684,2.89e-08,15;UBERON:0004208,2.89e-08,15;UBERON:0000365,5.33e-08,5;UBERON:0009856,6.87e-08,26;UBERON:0005178,9.99e-08,34;UBERON:0002224,9.99e-08,34;UBERON:0009497,1.49e-07,25;UBERON:0000015,1.49e-07,25;UBERON:0002423,1.49e-07,25;UBERON:0006235,1.49e-07,25;UBERON:0004161,1.49e-07,25;UBERON:0002417,1.98e-07,60;UBERON:0000916,1.98e-07,60;UBERON:0007196,2.04e-07,15;UBERON:0001558,2.04e-07,15;UBERON:0007499,2.22e-07,25;UBERON:0005409,2.24e-07,25;UBERON:0000165,2.26e-07,29;UBERON:0000930,2.26e-07,29;UBERON:0005181,2.27e-07,35;UBERON:0000160,2.35e-07,17;UBERON:0000065,3.22e-07,54;UBERON:0002113,4.02e-07,26;UBERON:0003918,4.02e-07,26;UBERON:0011143,4.02e-07,26;UBERON:0005095,4.02e-07,26;UBERON:0007687,4.02e-07,26;UBERON:0003929,4.14e-07,54;UBERON:0009854,4.64e-07,23;UBERON:0005153,9.03e-07,37 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,1.47440361900905,12.5604210235037,1.52908960491121,3.16520373874144,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,18.3884244895785,19.5783847205863,14.4204063965047,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267540828089713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.982343066232845,16.7575832614569,17.0560843680838,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,19.1881382942715,0,0,0,0,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.9821728961244,12.5463215471784,12.3325976017272,2.43947412259191,0.927708378250397,1.2781333715647,1.14027160516907,2.27088765788066,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.6462960453256,0,0,1.96565443335525,1.18157981336281,0,2.21379189377604,0,16.9015439529283,14.6122279234905,17.5925701720354,18.6102774768644,0,0,0,0,0,0,0,0,2.37061319387782,2.57545848628462,0,0,0,15.9347517777521,4.19955320497149,4.53680311175637,7.7915914751478,6.97521452433509,27.22017022073,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0,0,0,0,0.197030760201927,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.12189300012382,1.66435439510497,3.32629322662648,0,0,0,0,0,0,0,0,0,0,0,0,3.14234568938218,7.01772646061497,9.02393691571784,0,0,0,4.51199612907412,2.69553679865452,9.41219723012226,1.46139224653261,1.05551628892876,0,0,0.647747748306418,0,2.70946437543853,11.0371750248068,6.88165937221603,9.14183609821597,4.70136984916574,0,0,0,0,0,1.33953315142039,0,0,17.2279661398852,18.8517471350591,0,0,0,0,0,0,0,0,0,5.12383237619032,13.8376848502876,6.12541019974004,12.6447226069437,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0,0,0,0,10.7768766252574,32.8448115012536,14.1558280319719,1.50630081242847,21.9557740062327,25.2707213501438,26.6058092122005,16.999531615315,0,0,0,0,0,0,0,0,0,0,4.6557641036396,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.54991891428769,0,0,0,0,2.62618933211459,0,4.91457123358771,0,0,0,0,4.22250816255987,0.19924798825107,1.10513566212459,1.0077309914171,0.20453736500431,0,0,5.75157447342892,4.29650819221462,0,0.789147245095469,0,0,0,0,0,2.86470537193757,0.524759999977174,0,6.94140034541548,4.32231205497703,3.07303986298317,0,0,0,0,0.120596438625408,0,0,0,0,0,5.99522100397994,1.46205491157214,0,2.76676685265672,1.07709173291727,2.49888955420619,0.957003479195758,0.641183153813036,0.533034776018635,0,0,0,0,0,0,0,0,0,2.61172493054636,3.95788600015034,0,6.96683351754953,2.65372693510018,3.66618086960175,0,0,0,0,0,0,0,1.9566461893209,0,2.76209081994573,2.41981432097328,0,0,0,0,0,0,0,0,0.853828638089378,0,2.08271686002157,8.13336898539334,6.09414446062818,1.22308667769421,0,0,0,0,6.013319022282,0,0.225980740780532,0,0,0,2.15106521008283,0.721429382263803,8.75157278431345,0.39961921916426,11.2390525380203,0,0,0,0,2.59263438078475,0,0,0,0,0,0,0,0,0,0,0,0,0.798716001995964,0,0.223171457441873,0,0,6.98975697164723,6.53900413149956,7.82950654621081,5.86410831531409,2.16540459332447,0,0,0,1.60753148465019,0.412618309791701,0.83088067605837,10.798746794472,2.32140586367385,0,24.8221668823457,4.01909107225911,2.57027481861491,0,0,3.45447355175002,0,0,0,0,0,0,0,0,0,0,1.75862680413699,5.30027555648885,0,0,0,3.52407511158336,0.427149650270779,0.471612915298998,0.414239055347196,0,0,0,2.55336503108073,0,0,0,0,2.51286554000375,0,0,0,0,0,0.18628920882415,0,0,2.72968411574966,0,0,0,0.144921028610825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150257608997218,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.86858885317099,0,0,0,17.537427795545,13.8179433925898,14.720885483026,0,0,13.9466001416694,0,0,0,0,0,8.67252947860556,7.46492712039567,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.49627223605743,4.60081921056187,6.23657234973709,2.88814165375846,0,0,0,0.150420656698515,0,9.37816813479711,0,0,4.87925084516249,0,0,0,0,0,1.64477330057155,1.48863353516788,0,1.78867398695433,0,0,0,0.227662191351298,2.12885688390333,0,0,0,0,0.827356886187777,4.11556187000656,0.39246546425257,0,5.0448989396482,7.30526976407596,0,0,0.428859265059938,0,0,0,0,1.45051314914126,0.3414369541879,6.22133695632683,2.15113679410139,0,0,2.11693525095465,1.8328549483524,0,0,3.46751838573156,2.84635677484205,14.020561372961,0,0,0,3.88568794447312,0.467878926924211,1.39265542612958,0,1.1294608203896,0,1.81155412280008,6.71415175539119,5.68254857310289,2.82190377816914,0,1.88541237681301,0,0,0.4226557275834,0,0.0939839179798536,0.128915775947154,0,1.96409332466223,2.11736923029415,1.20362050033752,10.2247094354512,1.37618785021362,0,0,0,0,1.0580536810308,0,0,0,0,0,0,1.63182127587171,0.26721740526556,1.56221329209236,1.50424523575425,0.151557396436479,0.267964130156178,0,0,0.852935927603924,0.476128862927481,0.129177819672012,0.372448285775147,0,0.0636471582781649,0,4.57205170583619,3.42233301085281,3.4349547037439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| |||
|short_description=p4@LAD1 | |||
}} |
Revision as of 23:17, 10 January 2014
Short description: | p4@LAD1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_LAD1_5end |
Coexpression cluster: | C226_Corneal_Keratinocyte_Esophageal_Urothelial_Mammary_Bronchial_Tracheal |
Association with transcript: | 170bp_to_NM_005558, uc001gwm.2, uc009wzu.1_5end |
EntrezGene: | LAD1 |
HGNC: | 6472 |
UniProt: | O00515 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 4.92e-40 | 253 |
endodermal cell | 1.15e-28 | 58 |
endo-epithelial cell | 1.14e-26 | 42 |
respiratory epithelial cell | 2.89e-14 | 13 |
epithelial cell of alimentary canal | 1.65e-13 | 20 |
kidney tubule cell | 4.33e-11 | 10 |
nephron tubule epithelial cell | 4.33e-11 | 10 |
epithelial cell of tracheobronchial tree | 1.17e-09 | 9 |
epithelial cell of lower respiratory tract | 1.17e-09 | 9 |
general ecto-epithelial cell | 2.53e-09 | 14 |
epithelial cell of nephron | 2.89e-08 | 15 |
Langerhans cell | 1.58e-07 | 5 |
transitional epithelial cell | 3.21e-07 | 4 |
urothelial cell | 3.21e-07 | 4 |
kidney cell | 5.69e-07 | 17 |
kidney epithelial cell | 5.69e-07 | 17 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.94e-16 | 106 |
squamous cell carcinoma | 1.25e-14 | 14 |
cell type cancer | 4.02e-12 | 143 |
adenocarcinoma | 7.26e-09 | 25 |