FFCP PHASE1:Mm9::chr7:3849731..3849744,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=100038909,100041146,18722,18724,18727,18729,18730,18725|HGNC=|MCL_coexpression_id=193|UniProt=E9Q1Z6,A2NTK4,A0PJG6,A2NTJ9|association_with_transcript=-9bp_to_ENSMUST00000070639,NM_011094,uc009ewk.2,uc009ewl.2,uc009ewm.2,uc012ewh.1,uc012ewi.1_5end|description=CAGE_peak_1_at_Gm14548_5end,CAGE_peak_1_at_Gm15448_5end,CAGE_peak_1_at_Pira11_5end,CAGE_peak_1_at_Pira1_5end,CAGE_peak_1_at_Pira2_5end,CAGE_peak_1_at_Pira4_5end,CAGE_peak_1_at_Pira7_5end,CAGE_peak_2_at_Pira6_5end|id=chr7:3849731..3849744,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=CL:0002476,1.08e-11,2;CL:0000839,1.38e-09,13;CL:0000553,8.36e-08,6;CL:0000556,8.36e-08,6;CL:0000763,9.35e-08,16;CL:0002092,3.72e-07,3;CL:0002540,3.72e-07,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=DOID:0060100,3.26e-16,3;DOID:4045,3.26e-16,3;DOID:0050686,2.33e-08,6|ontology_enrichment_uberon=UBERON:0002405!2.70e-08!70;UBERON:0002106!3.55e-08!6;UBERON:0004457!3.55e-08!6;UBERON:0000042!3.55e-08!6;UBERON:0004854!3.55e-08!6;UBERON:0009034!3.55e-08!6;UBERON:0002095!3.55e-08!6;UBERON:0004782!3.55e-08!6;UBERON:0003281!3.55e-08!6;UBERON:0009664!3.55e-08!6;UBERON:0002296!3.55e-08!6;UBERON:0005602!3.55e-08!6;UBERON:0001179!3.55e-08!6;UBERON:0006293!3.55e-08!6;UBERON:0002193!4.79e-07!48;UBERON:0002390!6.95e-07!45;UBERON:0003061!6.95e-07!45|ontology_enrichment_uberon_v019_2=UBERON:0002204,1.04e-20,32;UBERON:0001474,5.73e-17,22;UBERON:0004765,5.73e-17,22;UBERON:0001434,5.73e-17,22;UBERON:0002371,1.96e-14,16;UBERON:0002193,9.87e-09,48;UBERON:0002405,9.87e-09,48;UBERON:0002390,1.25e-07,45;UBERON:0003061,1.25e-07,45|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.607425802169478,0,2.5236973228659,1.7824876368746,1.69755860719212,0.17008658030214,0.297872853602656,0.261199789138935,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.7188856606334,29.6907430919044,20.4174260149781,9.41170380849623,17.7591826089196,18.4493934151838,0,0,0,0,0,0,0,0,0,0.503347818173209,0,0,0,0,0,0,0,0,0,0,1.3498495759221,0.988866362566974,1.4209602298922,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.15279824777681,0,0,0,0,0,0.289864488701678,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0,1.03575153458869,0,0,0,0,0,0,0,0,0,2.65383165584962,0,1.98757366614354,0,0,0,0,0,0.239630249011841,0,0,0,0,0,0,0,0,0,0,0.995255764880744,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16455984991348,0,0,0,0.439100230582101,0.134206418760372,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.156998727841375,0,0.296452627087149,0,0,0,0,0.241177159752417,0.50925170356284,0.287696137450811,0.162135226775035,0,0,0,0.624075346229121,0,0.179397413521912,0,0.554259570499814,0,0,0.339490171550376,0.234690248288502,0.167506257441816,0,0.195133647857799,0.157635144106191,0,0,0.163863314715738,0.345369963731791,0.144649058581512,45.2373851817817,47.3197944922277,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161464426695906,0.0603129249281559,0,0,0,0,0.683483523191411,1.23832120777933,2.03713980106683,0.188368457004691,0.27338845544205,0.686334519619568,0,0,0,0,0,0,0,0,0,0,0,0.26175594198403,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102710957164827,0,0,0,0.120195449519969,0,0.100966449948148,0,0,0.0974578807397524,0.0962118416403295,0,0.226730383615211,0,0,0,0,0.187682475451182,0,0.214368379079066,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.222246727801615,0,0,0,0.25347929989024,0,0,0,0,0,0.115884325944855,0,0,0,0,0.177475806159338,0,0.145346416632329,0,0,0,0.263069711437843,0,0,0,0,0,0,0,0,0.467863216890817,0.429742108096597,0.57386499620653,0.441182838239031,0|short_description=p1@Gm14548,p1@Gm15448,p1@Pira11,p1@Pira1,p1@Pira2,p1@Pira4,p1@Pira7,p2@Pira6}} | ||
|EntrezGene=100038909,100041146,18722,18724,18727,18729,18730,18725 | |||
|HGNC= | |||
|MCL_coexpression_id=193 | |||
|UniProt=E9Q1Z6,A2NTK4,A0PJG6,A2NTJ9 | |||
|association_with_transcript=-9bp_to_ENSMUST00000070639,NM_011094,uc009ewk.2,uc009ewl.2,uc009ewm.2,uc012ewh.1,uc012ewi.1_5end | |||
|description=CAGE_peak_1_at_Gm14548_5end,CAGE_peak_1_at_Gm15448_5end,CAGE_peak_1_at_Pira11_5end,CAGE_peak_1_at_Pira1_5end,CAGE_peak_1_at_Pira2_5end,CAGE_peak_1_at_Pira4_5end,CAGE_peak_1_at_Pira7_5end,CAGE_peak_2_at_Pira6_5end | |||
|id=chr7:3849731..3849744,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2=CL:0002476,1.08e-11,2;CL:0000839,1.38e-09,13;CL:0000553,8.36e-08,6;CL:0000556,8.36e-08,6;CL:0000763,9.35e-08,16;CL:0002092,3.72e-07,3;CL:0002540,3.72e-07,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2=DOID:0060100,3.26e-16,3;DOID:4045,3.26e-16,3;DOID:0050686,2.33e-08,6 | |||
|ontology_enrichment_uberon=UBERON:0002405!2.70e-08!70;UBERON:0002106!3.55e-08!6;UBERON:0004457!3.55e-08!6;UBERON:0000042!3.55e-08!6;UBERON:0004854!3.55e-08!6;UBERON:0009034!3.55e-08!6;UBERON:0002095!3.55e-08!6;UBERON:0004782!3.55e-08!6;UBERON:0003281!3.55e-08!6;UBERON:0009664!3.55e-08!6;UBERON:0002296!3.55e-08!6;UBERON:0005602!3.55e-08!6;UBERON:0001179!3.55e-08!6;UBERON:0006293!3.55e-08!6;UBERON:0002193!4.79e-07!48;UBERON:0002390!6.95e-07!45;UBERON:0003061!6.95e-07!45 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002204,1.04e-20,32;UBERON:0001474,5.73e-17,22;UBERON:0004765,5.73e-17,22;UBERON:0001434,5.73e-17,22;UBERON:0002371,1.96e-14,16;UBERON:0002193,9.87e-09,48;UBERON:0002405,9.87e-09,48;UBERON:0002390,1.25e-07,45;UBERON:0003061,1.25e-07,45 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.607425802169478,0,2.5236973228659,1.7824876368746,1.69755860719212,0.17008658030214,0.297872853602656,0.261199789138935,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.7188856606334,29.6907430919044,20.4174260149781,9.41170380849623,17.7591826089196,18.4493934151838,0,0,0,0,0,0,0,0,0,0.503347818173209,0,0,0,0,0,0,0,0,0,0,1.3498495759221,0.988866362566974,1.4209602298922,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.15279824777681,0,0,0,0,0,0.289864488701678,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0,1.03575153458869,0,0,0,0,0,0,0,0,0,2.65383165584962,0,1.98757366614354,0,0,0,0,0,0.239630249011841,0,0,0,0,0,0,0,0,0,0,0.995255764880744,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16455984991348,0,0,0,0.439100230582101,0.134206418760372,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.156998727841375,0,0.296452627087149,0,0,0,0,0.241177159752417,0.50925170356284,0.287696137450811,0.162135226775035,0,0,0,0.624075346229121,0,0.179397413521912,0,0.554259570499814,0,0,0.339490171550376,0.234690248288502,0.167506257441816,0,0.195133647857799,0.157635144106191,0,0,0.163863314715738,0.345369963731791,0.144649058581512,45.2373851817817,47.3197944922277,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161464426695906,0.0603129249281559,0,0,0,0,0.683483523191411,1.23832120777933,2.03713980106683,0.188368457004691,0.27338845544205,0.686334519619568,0,0,0,0,0,0,0,0,0,0,0,0.26175594198403,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102710957164827,0,0,0,0.120195449519969,0,0.100966449948148,0,0,0.0974578807397524,0.0962118416403295,0,0.226730383615211,0,0,0,0,0.187682475451182,0,0.214368379079066,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.222246727801615,0,0,0,0.25347929989024,0,0,0,0,0,0.115884325944855,0,0,0,0,0.177475806159338,0,0.145346416632329,0,0,0,0.263069711437843,0,0,0,0,0,0,0,0,0.467863216890817,0.429742108096597,0.57386499620653,0.441182838239031,0 | |||
|short_description=p1@Gm14548,p1@Gm15448,p1@Pira11,p1@Pira1,p1@Pira2,p1@Pira4,p1@Pira7,p2@Pira6 | |||
}} |
Revision as of 13:25, 14 September 2013
Short description: | p1@Gm14548, p1@Gm15448, p1@Pira11, p1@Pira1, p1@Pira2, p1@Pira4, p1@Pira7, p2@Pira6 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Gm14548_5end, CAGE_peak_1_at_Gm15448_5end, CAGE_peak_1_at_Pira11_5end, CAGE_peak_1_at_Pira1_5end, CAGE_peak_1_at_Pira2_5end, CAGE_peak_1_at_Pira4_5end, CAGE_peak_1_at_Pira7_5end, CAGE_peak_2_at_Pira6_5end |
Coexpression cluster: | MCL_coexpression_mm9:193 |
Association with transcript: | -9bp_to_ENSMUST00000070639, NM_011094, uc009ewk.2, uc009ewl.2, uc009ewm.2, uc012ewh.1, uc012ewi.1_5end |
EntrezGene: | 100038909,100041146,18722,18724,18727,18729,18730,18725 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
bone marrow macrophage | 1.08e-11 | 2 |
myeloid lineage restricted progenitor cell | 1.38e-09 | 13 |
megakaryocyte progenitor cell | 8.36e-08 | 6 |
megakaryocyte | 8.36e-08 | 6 |
myeloid cell | 9.35e-08 | 16 |
bone marrow cell | 3.72e-07 | 3 |
mesenchymal stem cell of the bone marrow | 3.72e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system | 1.04e-20 | 32 |
bone element | 5.73e-17 | 22 |
skeletal element | 5.73e-17 | 22 |
skeletal system | 5.73e-17 | 22 |
bone marrow | 1.96e-14 | 16 |
hemolymphoid system | 9.87e-09 | 48 |
immune system | 9.87e-09 | 48 |
hematopoietic system | 1.25e-07 | 45 |
blood island | 1.25e-07 | 45 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system cancer | 3.26e-16 | 3 |
muscle cancer | 3.26e-16 | 3 |
organ system cancer | 2.33e-08 | 6 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.