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FFCP PHASE1:Mm9::chr2:91035197..91035237,-: Difference between revisions

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{{FFCP
{{FFCP|EntrezGene=22259|HGNC=|MCL_coexpression_id=175|UniProt=Q91X41,Q9Z0Y9|association_with_transcript=-5bp_to_ENSMUST00000111356,NM_013839,uc008kvc.2_5end|description=CAGE_peak_1_at_Nr1h3_5end|id=chr2:91035197..91035237,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004119!1.23e-10!130;UBERON:0000925!1.23e-10!130;UBERON:0006595!1.23e-10!130;UBERON:0001007!3.49e-10!128;UBERON:0001555!3.49e-10!128;UBERON:0007026!3.49e-10!128;UBERON:0004921!1.76e-09!126;UBERON:0004185!1.76e-09!126;UBERON:0009569!5.55e-09!66;UBERON:0009854!9.23e-09!23;UBERON:0009856!9.23e-09!23;UBERON:0005911!9.25e-09!69;UBERON:0002365!9.27e-09!25;UBERON:0002330!9.27e-09!25;UBERON:0002107!9.60e-09!22;UBERON:0007499!9.60e-09!22;UBERON:0006925!9.60e-09!22;UBERON:0009497!9.60e-09!22;UBERON:0000015!9.60e-09!22;UBERON:0002423!9.60e-09!22;UBERON:0006235!9.60e-09!22;UBERON:0008835!9.60e-09!22;UBERON:0003894!9.60e-09!22;UBERON:0004161!9.60e-09!22;UBERON:0008836!9.60e-09!22;UBERON:0005172!3.28e-07!49;UBERON:0005173!3.28e-07!49;UBERON:0002417!3.28e-07!49;UBERON:0000916!3.28e-07!49;UBERON:0004923!3.73e-07!24|ontology_enrichment_uberon_v019_2=UBERON:0004119,6.35e-13,118;UBERON:0000925,6.35e-13,118;UBERON:0006595,6.35e-13,118;UBERON:0001007,2.16e-12,116;UBERON:0001555,2.16e-12,116;UBERON:0007026,2.16e-12,116;UBERON:0004921,1.49e-11,114;UBERON:0005911,3.57e-09,69;UBERON:0009854,5.11e-09,23;UBERON:0009856,5.11e-09,23;UBERON:0002107,5.52e-09,22;UBERON:0007499,5.52e-09,22;UBERON:0006925,5.52e-09,22;UBERON:0009497,5.52e-09,22;UBERON:0000015,5.52e-09,22;UBERON:0002423,5.52e-09,22;UBERON:0006235,5.52e-09,22;UBERON:0008835,5.52e-09,22;UBERON:0003894,5.52e-09,22;UBERON:0004161,5.52e-09,22;UBERON:0008836,5.52e-09,22;UBERON:0000160,7.68e-09,31;UBERON:0002365,9.53e-09,25;UBERON:0002330,9.53e-09,25;UBERON:0009569,1.36e-08,66;UBERON:0004923,1.24e-07,24;UBERON:0005177,3.47e-07,79|phase1_expression=0.160148847104794,17.0997949743287,7.27998783023258,5.74682001482977,11.0197060588196,3.3575854382378,3.03696432774183,0.129123323441576,0,0,0,0,0,0,2.33176833270964,1.01237633694913,0.699561878128147,0.630924330716475,0.959801035240171,0,4.25216450755349,0,0,5.27974995218242,7.34109699414944,11.4846392823004,8.18447792702242,10.5580904016086,5.51067916423484,8.06496415231778,4.21287970245079,0,0,0,1.44425809875637,1.16364251750945,1.63335485009895,0,0,0,0,0.683045484958446,0.485510353031154,0.881277725829041,0.304130793658544,0,3.12956537739216,0.872100625521786,1.5378032791413,1.74986909166855,0.699932108126813,1.43752564364972,0.335565212115473,0,0,2.31533492432352,3.15186783932632,1.54701627683233,0.404632921719196,0.528990979272033,0,0.677689064138264,0,14.3983954765024,16.8107281636386,16.3410426437603,0.299600110518405,0.384218305321555,0.207379224616955,0.135005938331691,0,1.14260393761521,0.662605622854841,0.122490799214954,0.191690942036473,0,0,0,1.53606533256243,0.131886287730194,0.274462930807229,0,0.558365998002762,1.12552522006336,0.61119299110724,0,0.284743361598206,0.186399445825301,0.681535739998656,0.302286240427142,0.579728977403356,22.371020801516,12.2394840067395,17.810205324048,19.4932925234301,18.3691023709908,12.9208866521212,0.852151612890289,1.29893002301434,0.35333957451034,0.14084341977668,3.84979432242953,2.54805239706646,0,0,0,0,12.2176751299394,5.17875767294343,5.04703272820404,0,0.608930956624282,0.691846491768175,1.20578112442098,1.64624189989987,7.28866229712118,6.92145909656247,18.2195189719089,4.42305275974937,1.61766849947409,1.32504911076236,1.93950101254089,1.86391761218122,0,1.25668024088073,9.70736809792647,0,0,0.254140454146129,1.04853447583376,0,0.125654352112864,1.21677024134594,0,0.41557608911912,0.648965052271031,0.509196819251581,4.35424397135326,1.26361379216837,1.47309299120532,0.390361328888111,0.229902104433473,0.180062129805349,0.30140963567143,0.408218994907967,0.2562274405697,0.374806898238915,1.29351685369508,0.646703978798527,0.567318240503458,0,0,0,0,1.02891068203972,0,0,0.257347907114715,0,0.414251545071004,0.234526059981096,0.36012412292203,0.946978942340841,0.393528463494808,0.617068451549513,0.697601834251224,0.536546802799238,0.350296027101508,0.493679549740441,0.985004784474571,2.51313309592153,1.75439984910399,4.39100230582101,5.36825675041487,0.630869845692382,0.205809224758569,7.93005079161115,14.0158800331678,0,0.232236671860439,1.03093969057675,1.61346819698674,2.00140239460383,2.28270751335071,8.54152310780121,5.59976446061637,2.26201687920243,2.38747766449381,4.09424582950152,3.59527763461689,5.83572734661674,7.56736838366595,0.569003702859245,0.114248512609729,0,0.814605311381257,0.969762435838129,0.631222379012867,1.70738650235495,3.69025369949005,4.70996183524124,6.04646103216823,32.9062416066735,1.00107063429656,0.786235980452812,2.02375901146368,2.23146133527353,2.41177159752417,3.31013607315846,3.45235364940973,2.7562988551756,10.4333337011471,11.5014565221884,5.58211421502755,11.23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|EntrezGene=22259
|HGNC=
|MCL_coexpression_id=175
|UniProt=Q91X41,Q9Z0Y9
|association_with_transcript=-5bp_to_ENSMUST00000111356,NM_013839,uc008kvc.2_5end
|description=CAGE_peak_1_at_Nr1h3_5end
|id=chr2:91035197..91035237,-
|ontology_enrichment_celltype=
|ontology_enrichment_celltype_v019_2=
|ontology_enrichment_disease=
|ontology_enrichment_disease_v019_2=
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|ontology_enrichment_uberon_v019_2=UBERON:0004119,6.35e-13,118;UBERON:0000925,6.35e-13,118;UBERON:0006595,6.35e-13,118;UBERON:0001007,2.16e-12,116;UBERON:0001555,2.16e-12,116;UBERON:0007026,2.16e-12,116;UBERON:0004921,1.49e-11,114;UBERON:0005911,3.57e-09,69;UBERON:0009854,5.11e-09,23;UBERON:0009856,5.11e-09,23;UBERON:0002107,5.52e-09,22;UBERON:0007499,5.52e-09,22;UBERON:0006925,5.52e-09,22;UBERON:0009497,5.52e-09,22;UBERON:0000015,5.52e-09,22;UBERON:0002423,5.52e-09,22;UBERON:0006235,5.52e-09,22;UBERON:0008835,5.52e-09,22;UBERON:0003894,5.52e-09,22;UBERON:0004161,5.52e-09,22;UBERON:0008836,5.52e-09,22;UBERON:0000160,7.68e-09,31;UBERON:0002365,9.53e-09,25;UBERON:0002330,9.53e-09,25;UBERON:0009569,1.36e-08,66;UBERON:0004923,1.24e-07,24;UBERON:0005177,3.47e-07,79
|phase1_expression=0.160148847104794,17.0997949743287,7.27998783023258,5.74682001482977,11.0197060588196,3.3575854382378,3.03696432774183,0.129123323441576,0,0,0,0,0,0,2.33176833270964,1.01237633694913,0.699561878128147,0.630924330716475,0.959801035240171,0,4.25216450755349,0,0,5.27974995218242,7.34109699414944,11.4846392823004,8.18447792702242,10.5580904016086,5.51067916423484,8.06496415231778,4.21287970245079,0,0,0,1.44425809875637,1.16364251750945,1.63335485009895,0,0,0,0,0.683045484958446,0.485510353031154,0.881277725829041,0.304130793658544,0,3.12956537739216,0.872100625521786,1.5378032791413,1.74986909166855,0.699932108126813,1.43752564364972,0.335565212115473,0,0,2.31533492432352,3.15186783932632,1.54701627683233,0.404632921719196,0.528990979272033,0,0.677689064138264,0,14.3983954765024,16.8107281636386,16.3410426437603,0.299600110518405,0.384218305321555,0.207379224616955,0.135005938331691,0,1.14260393761521,0.662605622854841,0.122490799214954,0.191690942036473,0,0,0,1.53606533256243,0.131886287730194,0.274462930807229,0,0.558365998002762,1.12552522006336,0.61119299110724,0,0.284743361598206,0.186399445825301,0.681535739998656,0.302286240427142,0.579728977403356,22.371020801516,12.2394840067395,17.810205324048,19.4932925234301,18.3691023709908,12.9208866521212,0.852151612890289,1.29893002301434,0.35333957451034,0.14084341977668,3.84979432242953,2.54805239706646,0,0,0,0,12.2176751299394,5.17875767294343,5.04703272820404,0,0.608930956624282,0.691846491768175,1.20578112442098,1.64624189989987,7.28866229712118,6.92145909656247,18.2195189719089,4.42305275974937,1.61766849947409,1.32504911076236,1.93950101254089,1.86391761218122,0,1.25668024088073,9.70736809792647,0,0,0.254140454146129,1.04853447583376,0,0.125654352112864,1.21677024134594,0,0.41557608911912,0.648965052271031,0.509196819251581,4.35424397135326,1.26361379216837,1.47309299120532,0.390361328888111,0.229902104433473,0.180062129805349,0.30140963567143,0.408218994907967,0.2562274405697,0.374806898238915,1.29351685369508,0.646703978798527,0.567318240503458,0,0,0,0,1.02891068203972,0,0,0.257347907114715,0,0.414251545071004,0.234526059981096,0.36012412292203,0.946978942340841,0.393528463494808,0.617068451549513,0.697601834251224,0.536546802799238,0.350296027101508,0.493679549740441,0.985004784474571,2.51313309592153,1.75439984910399,4.39100230582101,5.36825675041487,0.630869845692382,0.205809224758569,7.93005079161115,14.0158800331678,0,0.232236671860439,1.03093969057675,1.61346819698674,2.00140239460383,2.28270751335071,8.54152310780121,5.59976446061637,2.26201687920243,2.38747766449381,4.09424582950152,3.59527763461689,5.83572734661674,7.56736838366595,0.569003702859245,0.114248512609729,0,0.814605311381257,0.969762435838129,0.631222379012867,1.70738650235495,3.69025369949005,4.70996183524124,6.04646103216823,32.9062416066735,1.00107063429656,0.786235980452812,2.02375901146368,2.23146133527353,2.41177159752417,3.31013607315846,3.45235364940973,2.7562988551756,10.4333337011471,11.5014565221884,5.58211421502755,11.2333562321242,17.9331003342449,20.8100999685418,26.0519501536218,10.7156850296631,0.189491411770485,1.46668478797823,2.03694102930226,0.938760993154008,4.35516269348721,9.28370199455454,7.80534591431195,4.72905432318573,7.30833475840957,5.74037167166954,8.35702905050264,11.3972088031491,10.7040303350319,12.0633027151418,19.0366989336548,1.96705709207614,6.62248191131358,0.642202359951168,0.586058432961016,0,5.55436039849621,0,0,0,0,0,0.283076530788832,0,0,0.395287777946524,0.321321316421807,2.83880170416537,0.35613120733451,0.162886959353576,2.14461159864296,2.65490276679926,0,0.604647113929502,0.377210159511796,0.295301892880773,2.15204603560749,1.03371317267288,0,0.356497378384721,0.632073515871632,4.21674434299995,2.06271086496374,0.680879211507576,0.18006109403131,0.129358683782755,0,0.354680467284547,0,0.329098041204242,0.608929898229199,2.3467170806371,2.96564899209348,1.54369878638473,2.4732937941222,2.58343082713449,3.49814964583304,1.79058516004705,2.29797259643086,6.70405924248657,1.29797711407357,4.95525554313773,0.619160603889667,1.66675074632741,1.13021074202815,2.59719032669948,6.86334519619568,0,0,0,0.954670618015114,0,0,0.108005340821801,0,0.655087691238533,0.404593039154462,1.32245529160537,1.30877970992015,2.46268449254406,0.621339313086926,0,0.149516546043979,0,0.194451188344048,0.258319646955462,0,0.469428954583016,0.781226309063701,0.314578033277133,0.241584120826006,1.72818003754719,2.21207784439725,1.01362607645082,0.718976700153791,1.03936658382236,0.358053391334963,0.993406773906324,1.44234539423963,1.62458479892035,0.908698049533329,1.06689529317,1.20991422164209,1.26695244961678,1.73181314952593,0.818138315270983,1.58711268530648,0,0.0897138566094757,0.167884616364078,2.89784391048286,2.62755465631655,2.38097111547445,0.428736758158132,1.50471631210609,0,0.460325236507177,0,0.68741272937475,0,0.755393897389701,0,0.45032120322422,0,1.03552062350364,0.207574695168353,0.798049746802062,0,1.21553358534147,1.04806581313991,0.551530525350042,1.55572709461131,2.06035057238894,2.24643446714271,1.51618327058278,2.78827229879264,2.07488975524684,2.06011316433741,1.47257850531199,1.78049953762401,0.952587382566147,2.78122382267653,3.6652751888104,0.824171801606613,3.09117732282234,2.40008476669791,1.59728225543404,1.43061713968393,1.88950341622027,1.78807822789128,2.45382362885862,3.84148743032822,1.8414879800649,1.90125759384206,2.24456908663095,2.72860541685601,1.47756723563345,2.45538625901814,1.39443157067369,1.35034627686799,1.24905288968973,3.04111090979031,3.65280791882107,3.25190164517034,3.75005412503176,5.33296021926969
|short_description=p1@Nr1h3
}}

Revision as of 00:51, 14 September 2013

Short description:p1@Nr1h3
Species:Mouse (Mus musculus)
DPI dataset: NA
TSS-like-by-RIKEN-classifier(Yes/No): NA
DHS support(Yes/No): NA
Description: CAGE_peak_1_at_Nr1h3_5end
Coexpression cluster:MCL_coexpression_mm9:175
Association with transcript: -5bp_to_ENSMUST00000111356, NM_013839, uc008kvc.2_5end
EntrezGene:Nr1h3
Link to Zenbu:ZENBU


View on UCSC genome browser

Mouse over to see Genome browser image, Click image to go to Genome browser


CAGE Expression

Sample

p1@Nr1h3

Atoh1+ Inner ear hair cells - organ of corti, pool1.CNhs12533.12158-128G70.16
CD326+ enterocyte isolated from mice, treated with RANKL, day03, pool1.CNhs13242.11850-124I517.10
CD326+ enterocyte isolated from mice, treated with RANKL, day03, pool2.CNhs13233.11851-124I67.28
CD326+ enterocyte, pool1.CNhs13542.11848-124I35.75
CD326+ enterocyte, pool2.CNhs13197.11849-124I411.02
CD326++ enterocyte isolated from mice, treated with RANKL, day03, pool1.CNhs13236.11852-124I73.36
CD326++ enterocyte isolated from mice, treated with RANKL, day03, pool2.CNhs13210.11853-124I83.04
CD4+CD25+ regulatory T cells, pool2 (Balb_cAJcl).CNhs13221.11818-124E90.13
CD4+CD25-CD44- naive conventional T cells, PMA and ionomycin stimulation, 02hr, pool1 (C57BL_6J).CNhs13219.11816-124E70.00
CD4+CD25-CD44- naive conventional T cells, PMA and ionomycin stimulation, 02hr, pool2 (Balb_cAJcl).CNhs13226.11820-124F20.00
CD4+CD25-CD44- naive conventional T cells, antiCD3_CD28 stimulation, 06hr, pool1 (C57BL_6J).CNhs13218.11815-124E60.00
CD4+CD25-CD44- naive conventional T cells, antiCD3_CD28 stimulation, 06hr, pool2 (Balb_cAJcl).CNhs13225.11819-124F10.00
CD4+CD25-CD44- naive conventional T cells, pool1 (C57BL_6J).CNhs13217.11813-124E40.00
CD4+CD25-CD44- naive conventional T cells, pool2 (Balb_cAJcl).CNhs13220.11817-124E80.00
CD41+ megakaryocyte cancer, donor1.CNhs13079.11774-124A12.33
CD41+ megakaryocyte cancer, donor2.CNhs13213.11776-124A31.01
CD41+ megakaryocyte cancer, donor3.CNhs13506.11778-124A50.70
CD41+ megakaryocyte control, donor1.CNhs13212.11775-124A20.63
CD41+ megakaryocyte control, donor2.CNhs13214.11777-124A40.96
CD41+ megakaryocyte control, donor3.CNhs13201.11779-124A60.00
Clontech Mouse Universal Reference Total RNA, pool1.CNhs10609.10001-101A34.25
EBF KO HPCs induced to T cell, 00hr00min, biol_rep1.CNhs11058.12972-138H20.00
EBF KO HPCs induced to T cell, 00hr00min, biol_rep2.CNhs12980.12988-138I90.00
Follicle Associated Epithelium, pool2.CNhs13211.10262-104D15.28
Follicle Associated Epithelium, pool3.CNhs13200.10263-104D27.34
GP2+ M cell, pool1.CNhs13228.11845-124H911.48
GP2+ M cell, pool2.CNhs13231.11846-124I18.18
GP2+ M cell, pool3.CNhs13240.11847-124I210.56
Ileum epithelium, pool1.CNhs13199.10252-104B95.51
Ileum epithelium, pool2.CNhs13232.10253-104C18.06
Ileum epithelium, treated with RANKL, day03, pool3.CNhs13234.10260-104C84.21
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep1.CNhs12449.13063-139I30.00
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep2.CNhs12668.13129-140G60.00
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep3.CNhs12770.13195-141E90.00
Lgr5 positive intestinal stem cells, pool1.CNhs12555.12228-129F51.44
Lgr5 positive intestinal stem cells, pool2.CNhs12556.12229-129F61.16
Lgr5 positive intestinal stem cells, pool3.CNhs12557.12230-129F71.63
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor1 (10,11,12 3LL).CNhs12539.12159-128G80.00
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor2 (0127 3LL).CNhs12198.12161-128H10.00
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor3 (0128 3LL).CNhs12542.12163-128H30.00
MC1+Gr1+ myeloid-derived suppressor cells control, donor1 (4,5,6PBS).CNhs12540.12160-128G90.00
MC1+Gr1+ myeloid-derived suppressor cells control, donor2 (0127 PBS).CNhs12541.12162-128H20.68
MC1+Gr1+ myeloid-derived suppressor cells control, donor3 (0128 PBS).CNhs12543.12164-128H40.49
Mouse Aortic Smooth Muscle cells - differentiated, biol_rep1.CNhs11055.11484-119D80.88
Mouse Aortic Smooth Muscle cells - differentiated, biol_rep2.CNhs11056.11485-119D90.30
Mouse Aortic Smooth Muscle cells, donor1.CNhs11297.11299-117B30.00
Mouse Astrocytes - cerebellar, donor1.CNhs13077.11708-123B73.13
Mouse Astrocytes - cerebellar, donor2.CNhs12076.11550-120C20.87
Mouse Astrocytes - hippocampus, donor1.CNhs12129.11709-123B81.54
Mouse Astrocytes - hippocampus, donor2.CNhs12077.11551-120C31.75
Mouse Astrocytes, donor2.CNhs12078.11552-120C40.70
Mouse Astrocytes, donor3.CNhs12107.11633-122C41.44
Mouse CD19+ B Cells, donor1.CNhs13531.11856-125A20.34
Mouse CD4+ T Cells, donor1.CNhs13509.11854-124I90.00
Mouse CD8+ T Cells, donor1.CNhs13511.11855-125A10.00
Mouse Cardiac Myocytes, donor1.CNhs12355.11711-123C12.32
Mouse Cardiac Myocytes, donor2.CNhs12356.11729-123E13.15
Mouse Cardiac Myocytes, donor3.CNhs12353.11634-122C51.55
Mouse Granule cells, donor1.CNhs12131.11713-123C30.40
Mouse Granule cells, donor2.CNhs12357.11731-123E30.53
Mouse Granule cells, donor3.CNhs12108.11636-122C70.00
Mouse Meningeal cells, donor1.CNhs12132.11716-123C60.68
Mouse Meningeal cells, donor3.CNhs12109.11639-122D10.00
Mouse Mesenchymal stem cells - bone marrow derived, donor1.CNhs12628.11717-123C714.40
Mouse Mesenchymal stem cells - bone marrow derived, donor2.CNhs12633.11735-123E716.81
Mouse Mesenchymal stem cells - bone marrow derived, donor3.CNhs12616.11640-122D216.34
Mouse Microglia, donor1.CNhs12629.11718-123C80.30
Mouse Microglia, donor2.CNhs12634.11736-123E80.38
Mouse Neurons - cortical, donor1.CNhs12025.11724-123D50.21
Mouse Neurons - cortical, donor2.CNhs11947.11742-123F50.14
Mouse Neurons - cortical, donor3.CNhs12112.11647-122D90.00
Mouse Neurons - dorsal spinal cord, donor2.CNhs12635.11738-123F11.14
Mouse Neurons - dorsal spinal cord, donor3.CNhs12618.11643-122D50.66
Mouse Neurons - hippocampal, donor1.CNhs12133.11721-123D20.12
Mouse Neurons - hippocampal, donor2.CNhs12359.11739-123F20.19
Mouse Neurons - hippocampal, donor3.CNhs12110.11644-122D60.00
Mouse Neurons - raphe, donor1.CNhs12631.11722-123D30.00
Mouse Neurons - raphe, donor2.CNhs12636.11740-123F30.00
Mouse Neurons - raphe, donor3.CNhs12619.11645-122D71.54
Mouse Neurons - striatal, donor1.CNhs12134.11723-123D40.13
Mouse Neurons - striatal, donor2.CNhs12360.11741-123F40.27
Mouse Neurons - striatal, donor3.CNhs12111.11646-122D80.00
Mouse Neurons - substantia nigra, donor4, tech_rep1.CNhs12612.11489-119E40.56
Mouse Neurons - substantia nigra, donor5.CNhs12614.11490-119E51.13
Mouse Neurons - substantia nigra, donor6.CNhs12643.11770-123I60.61
Mouse Neurons - ventral spinal cord, donor1.CNhs12632.11725-123D60.00
Mouse Neurons - ventral spinal cord, donor2.CNhs12638.11743-123F60.28
Mouse Neurons - ventral spinal cord, donor3.CNhs12113.11648-122E10.19
Mouse Schwann, donor1.CNhs12507.11728-123D90.68
Mouse Schwann, donor2.CNhs12573.11746-123F90.30
Mouse hepatic Sinusoidal Endothelial Cells, donor1.CNhs13209.11830-124G30.58
Mouse hepatic Stellate Cells (lipocyte), donor1.CNhs13196.11825-124F722.37
Mouse hepatocyte, donor1.CNhs13078.11714-123C412.24
Mouse hepatocyte, donor3.CNhs12615.11637-122C817.81
Mouse hepatocyte, donor6.CNhs13090.11822-124F419.49
Mouse hepatocyte, donor8.CNhs13091.11824-124F618.37
SABiosciences XpressRef Mouse Universal Total RNA, pool1.CNhs10611.10003-101A712.92
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep1 (000hC4).CNhs11939.12338-130I70.85
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep2 (000hC5).CNhs13275.12460-132E31.30
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep3 (000hC6).CNhs13324.12582-133I80.35
Sox2+ Supporting cells - organ of corti, pool1.CNhs12532.12157-128G60.14
TSt-4/DLL1 feeder cells, biol_rep1.CNhs13407.12971-138H13.85
TSt-4/DLL1 feeder cells, biol_rep2.CNhs13408.12987-138I82.55
TSt-4/DLL1 feeder cells, biol_rep3.CNhs13409.13003-139B60.00
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep1.CNhs13739.13367-143G10.00
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep2.CNhs13740.13368-143G20.00
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep3.CNhs13741.13369-143G30.00
Universal RNA - Mouse Normal Tissues Biochain, pool1.CNhs10613.10008-101B612.22
accessory axillary lymph node, adult.CNhs10475.1063-29H95.18
adrenal gland, adult.CNhs10508.49-24D75.05
adrenal gland, embryo E14.CNhs11038.406-44C50.00
adrenal gland, embryo E16.CNhs11004.1254-43D60.61
adrenal gland, embryo E17.CNhs11043.1263-45I10.69
adrenal gland, embryo E18.CNhs11026.1262-18F51.21
adrenal gland, neonate N00.CNhs11191.1311-23C11.65
adrenal gland, neonate N25.CNhs11223.1377-27I37.29
amnion, adult pregnant day17.5.CNhs10488.583-22A86.92
aorta, adult.CNhs10498.46-23H118.22
bone (os femoris), adult.CNhs10483.56-12G24.42
bone (os femoris), neonate N02.CNhs11227.1985-43F51.62
bone (os femoris), neonate N16.CNhs11225.1525-43A61.33
bone (os femoris), neonate N20.CNhs11195.1350-25C31.94
cecum, adult.CNhs10467.37-13H41.86
cerebellum, adult.CNhs10494.15-8B20.00
cerebellum, neonate N30.CNhs11135.1395-42I21.26
colon, adult.CNhs10468.36-18H79.71
common myeloid progenitor CMP, biol_rep1.CNhs12550.12122-128C70.00
common myeloid progenitor CMP, biol_rep2.CNhs12203.12125-128D10.00
common myeloid progenitor CMP, biol_rep3.CNhs12551.12128-128D40.25
corpora quadrigemina, adult.CNhs10501.16-22A41.05
corpus striatum, adult.CNhs10487.19-21D80.00
corpus striatum, neonate N00.CNhs11226.630-43F10.13
cortex, adult.CNhs10473.12-14D51.22
cortex, neonate N30.CNhs11107.1392-42F20.00
diencephalon, adult.CNhs10482.20-12F20.42
diencephalon, neonate N30.CNhs11201.1388-42B20.65
epididymis and seminiferous tubule, neonate N00.CNhs11218.1310-23B10.51
epididymis and seminiferous tubule, neonate N30.CNhs11199.1387-42A24.35
epididymis, adult.CNhs10490.58-23B21.26
eyeball, adult.CNhs10484.31-12G41.47
eyeball, embryo E12.CNhs11016.345-16C60.39
eyeball, embryo E14.CNhs10521.399-16E20.23
eyeball, embryo E15.CNhs10593.426-16C90.18
eyeball, embryo E17.CNhs11023.1261-18D40.30
eyeball, neonate N00.CNhs11207.633-15C60.41
eyeball, neonate N01.CNhs11140.1532-43E70.26
eyeball, neonate N02.CNhs11205.1551-44G80.37
eyeball, neonate N16.CNhs11188.777-19A21.29
forelimb, embryo E11.CNhs10596.335-25E20.65
forelimb, embryo E12.CNhs10600.359-14H20.57
forelimb, embryo E13.CNhs10589.384-1E20.00
forelimb, embryo E14.CNhs10577.413-26A80.00
forelimb, embryo E15.CNhs11007.437-20E70.00
forelimb, embryo E17.CNhs10598.1517-43C40.00
forelimb, embryo E18.CNhs11008.1520-43B51.03
gonad, embryo E13.CNhs11044.1564-45I60.00
granulocyte macrophage progenitor GMP, biol_rep1.CNhs12206.12123-128C80.00
granulocyte macrophage progenitor GMP, biol_rep2.CNhs12202.12126-128D20.26
granulocyte macrophage progenitor GMP, biol_rep3.CNhs11928.12129-128D50.00
heart, embryo E11.CNhs10586.331-24E90.41
heart, embryo E12.CNhs11015.353-12F50.23
heart, embryo E13.CNhs11013.376-3I90.36
heart, embryo E14.CNhs10597.403-26D40.95
heart, embryo E15.CNhs11017.431-16C80.39
heart, embryo E16.CNhs11021.457-17C60.62
heart, embryo E17.CNhs11025.479-18E50.70
heart, embryo E18.CNhs11030.1283-20G30.54
heart, neonate N00.CNhs11213.639-21E30.35
heart, neonate N03.CNhs11221.1349-25I20.49
heart, neonate N10.CNhs11118.749-24G10.99
heart, neonate N16.CNhs11209.782-15G12.51
heart, neonate N20.CNhs11127.821-26I61.75
heart, neonate N25.CNhs11196.1351-25D34.39
heart, neonate N30.CNhs11202.1390-42D25.37
hippocampus, adult.CNhs10478.13-16E80.63
hippocampus, neonate N00.CNhs11228.627-43G10.21
intestinal mucosa, adult.CNhs10506.860-29I37.93
intestine, adult.CNhs10496.178-9A314.02
intestine, embryo E12.CNhs11019.1251-16I50.00
intestine, embryo E13.CNhs11010.381-16D50.23
intestine, embryo E15.CNhs10602.976-16D81.03
intestine, embryo E16.CNhs10585.463-22H41.61
intestine, embryo E17.CNhs10582.482-18D32.00
intestine, embryo E18.CNhs10526.1289-20F72.28
intestine, neonate N00.CNhs11126.644-26D18.54
intestine, neonate N01.CNhs11192.1322-23E95.60
intestine, neonate N06.CNhs11102.688-20B82.26
intestine, neonate N07.CNhs11095.720-20F22.39
intestine, neonate N10.CNhs11098.755-23A54.09
intestine, neonate N20.CNhs11187.827-18D13.60
intestine, neonate N25.CNhs11121.1352-25E35.84
intestine, neonate N30.CNhs11131.1384-42G17.57
kidney, embryo E14.CNhs10606.411-4I90.57
kidney, embryo E15.CNhs10997.434-16F80.11
kidney, embryo E16.CNhs10584.464-22A50.00
kidney, embryo E17.CNhs11028.483-18I20.81
kidney, embryo E18.CNhs11001.1288-20C70.97
kidney, neonate N00.CNhs11214.646-21G70.63
kidney, neonate N10.CNhs11206.758-6D51.71
kidney, neonate N20.CNhs11113.832-19I13.69
kidney, neonate N25.CNhs11122.1353-25F34.71
kidney, neonate N30.CNhs11203.1385-42H16.05
liver, adult pregnant day01.CNhs10466.508-5B232.91
liver, embryo E12.CNhs10601.355-15F81.00
liver, embryo E13.CNhs10524.378-3H60.79
liver, embryo E14.CNhs10594.409-16E12.02
liver, embryo E15.CNhs10520.433-16D72.23
liver, embryo E16.CNhs10523.462-17F52.41
liver, embryo E17.CNhs10510.481-18A33.31
liver, embryo E18.CNhs10579.499-43G43.45
liver, neonate N00.CNhs11117.641-24F42.76
liver, neonate N03.CNhs11123.1345-25G210.43
liver, neonate N06.CNhs11101.684-20A811.50
liver, neonate N07.CNhs11103.716-20H25.58
liver, neonate N10.CNhs11115.751-24B911.23
liver, neonate N20.CNhs11220.823-25A317.93
liver, neonate N25.CNhs11198.1368-26H120.81
liver, neonate N30.CNhs11106.1382-42D126.05
lung, adult.CNhs10474.28-22B110.72
lung, embryo E12.CNhs10522.354-16G20.19
lung, embryo E14.CNhs10604.404-26F81.47
lung, embryo E15.CNhs11020.432-17C52.04
lung, embryo E16.CNhs10998.458-17B60.94
lung, embryo E17.CNhs10605.480-44A64.36
lung, embryo E18.CNhs10583.1287-20I69.28
lung, neonate N00.CNhs11224.640-42C67.81
lung, neonate N06.CNhs11212.683-20E54.73
lung, neonate N07.CNhs11111.715-19A37.31
lung, neonate N10.CNhs11219.750-23E65.74
lung, neonate N20.CNhs11109.822-18A48.36
lung, neonate N25.CNhs11119.1359-25C711.40
lung, neonate N30.CNhs11133.1394-42H210.70
macrophage, bone marrow derived, pool1.CNhs11457.3560-170A112.06
macrophage, bone marrow derived, pool2.CNhs11532.3632-171A119.04
mammary gland, adult lactating day02.CNhs10480.595-22B61.97
mammary gland, adult pregnant day19.CNhs10476.588-5H26.62
medulla oblongata, adult.CNhs10477.17-12C20.64
medulla oblongata, neonate N30.CNhs11200.1396-42A30.59
mouse fibroblast cell line: CRL-1658 NIH/3T3.CNhs11093.1830-49C70.00
muscle (biceps femoris), neonate N30.CNhs11129.1389-42C25.55
neurospheres - enteric neuron derived, biol_rep1.CNhs13087.11810-124E10.00
neurospheres - enteric neuron derived, biol_rep2.CNhs13088.11811-124E20.00
neurospheres - enteric neuron derived, biol_rep3.CNhs13089.11812-124E30.00
neurospheres - parasympathetic neuron derived, biol_rep1.CNhs13084.11807-124D70.00
neurospheres - parasympathetic neuron derived, biol_rep2.CNhs13085.11808-124D80.00
neurospheres - parasympathetic neuron derived, biol_rep3.CNhs13086.11809-124D90.28
neurospheres - sympathetic neuron derived, biol_rep1.CNhs13081.11804-124D40.00
neurospheres - sympathetic neuron derived, biol_rep2.CNhs13082.11805-124D50.00
neurospheres - sympathetic neuron derived, biol_rep3.CNhs13083.11806-124D60.40
olfactory brain, adult.CNhs10489.18-22I90.32
ovary, adult.CNhs10507.91-2I72.84
ovary, embryo E18.CNhs11040.505-44H70.36
ovary, neonate N00.CNhs11217.1299-22I40.16
oviduct, adult pregnant day01.CNhs10500.988-6G62.14
pancreas, adult.CNhs10486.34-16E42.65
pancreas, embryo E14.CNhs11012.405-44F40.00
pancreas, embryo E15.CNhs11042.1556-45F20.60
pancreas, embryo E16.CNhs11003.460-26E50.38
pancreas, embryo E17.CNhs10599.1558-45G30.30
pancreas, embryo E18.CNhs10580.1535-43I72.15
pancreas, neonate N00.CNhs11105.645-26G91.03
pancreas, neonate N01.CNhs11138.1531-43D70.00
pancreas, neonate N02.CNhs11139.1539-43D80.36
pancreas, neonate N16.CNhs11136.787-43B60.63
pancreas, neonate N25.CNhs11094.1555-45E24.22
pancreas, neonate N30.CNhs11182.1548-44H52.06
pituitary gland, adult.CNhs10493.21-1G80.68
pituitary gland, embryo E12.CNhs11018.346-16E60.18
pituitary gland, embryo E13.CNhs11009.370-44C70.13
pituitary gland, embryo E14.CNhs11037.398-44A50.00
pituitary gland, embryo E15.CNhs10592.427-16B90.35
pituitary gland, embryo E16.CNhs11036.449-43F60.00
pituitary gland, embryo E17.CNhs11039.1265-44F50.33
pituitary gland, neonate N00.CNhs11190.1308-22E90.61
placenta, adult pregnant day10.CNhs10472.539-13I72.35
placenta, adult pregnant day17.CNhs10464.577-18G32.97
prostate, adult.CNhs10470.859-1F81.54
skin, adult.CNhs10492.30-1C32.47
skin, neonate N00.CNhs11124.650-25G42.58
skin, neonate N03.CNhs11215.662-22H33.50
skin, neonate N06.CNhs11097.693-20I51.79
skin, neonate N10.CNhs11108.762-6C42.30
small intestine, neonate N16.CNhs11114.790-21I16.70
spinal cord, adult.CNhs10505.24-13C91.30
spleen, adult.CNhs10465.25-2G24.96
spleen, embryo E16.CNhs11035.461-43C10.62
spleen, embryo E18.CNhs11011.1271-21F21.67
spleen, neonate N10.CNhs11116.752-24D11.13
spleen, neonate N20.CNhs11112.824-19H12.60
spleen, neonate N25.CNhs11099.1354-25G36.86
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep1.CNhs12534.12121-128C60.00
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep2.CNhs12535.12124-128C90.00
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep3.CNhs12536.12127-128D30.00
stomach, adult.CNhs10503.33-1H60.95
stomach, embryo E12.CNhs10588.356-43E30.00
stomach, embryo E15.CNhs10603.1252-16G80.00
stomach, embryo E16.CNhs11022.459-17D40.11
stomach, embryo E17.CNhs11006.1035-18D50.00
stomach, embryo E18.CNhs10999.1286-20C60.66
stomach, neonate N03.CNhs11193.1340-24B80.40
stomach, neonate N07.CNhs11210.718-18A91.32
stomach, neonate N25.CNhs11104.1355-25E41.31
stomach, neonate N30.CNhs11134.1386-42I12.46
submandibular gland, adult.CNhs10469.59-29C10.62
testis, adult.CNhs10504.57-7G50.00
testis, embryo E13.CNhs11031.389-23F50.15
testis, embryo E15.CNhs11034.443-27C50.00
testis, embryo E16.CNhs11033.470-26G50.19
testis, embryo E17.CNhs11029.486-18I50.26
testis, embryo E18.CNhs11027.503-18G50.00
testis, neonate N00.CNhs11189.1300-22B70.47
testis, neonate N07.CNhs11222.726-26I40.78
testis, neonate N10.CNhs11204.763-44D90.31
testis, neonate N20.CNhs11110.839-18H30.24
testis, neonate N30.CNhs11130.1391-42E21.73
thymus, adult.CNhs10471.38-12B52.21
thymus, embryo E14.CNhs11041.402-44I41.01
thymus, embryo E15.CNhs11005.430-45I20.72
thymus, embryo E16.CNhs11002.456-26C51.04
thymus, embryo E17.CNhs10581.478-18C10.36
thymus, embryo E18.CNhs10595.1273-19G40.99
thymus, neonate N02.CNhs11181.1541-43F81.44
thymus, neonate N03.CNhs11137.2104-43C71.62
thymus, neonate N06.CNhs11197.681-26C40.91
thymus, neonate N07.CNhs11211.713-19D31.07
thymus, neonate N10.CNhs11194.748-24E41.21
thymus, neonate N20.CNhs11186.820-7A21.27
thymus, neonate N25.CNhs11125.1362-25G71.73
thymus, neonate N30.CNhs11132.1393-42G20.82
tongue, adult.CNhs10499.32-1B41.59
trophoblast stem cell line B1 differentiation, day00, biol_rep1.CNhs13526.13297-142H30.00
trophoblast stem cell line R1AB differentiation, day00, biol_rep1.CNhs13481.13283-142F70.09
trophoblast stem cell line Rybp differentiation, day00, biol_rep1.CNhs13519.13290-142G50.17
urinary bladder, adult.CNhs10481.879-12E42.90
uterus, adult pregnant day19.CNhs10497.590-15F52.63
uterus, adult.CNhs10509.92-27E52.38
vagina, adult.CNhs10502.89-27D50.43
vesicular gland, adult.CNhs10491.51-27F81.50
visual cortex - wildtype, neonate N15, donor1.CNhs13031.10235-104A10.00
visual cortex - wildtype, neonate N15, donor2.CNhs13032.10236-104A20.46
visual cortex - wildtype, neonate N15, donor3.CNhs13033.10237-104A30.00
visual cortex - wildtype, neonate N15, donor5.CNhs13820.10349-105D70.69
visual cortex - wildtype, neonate N30, donor1.CNhs13034.10238-104A40.00
visual cortex - wildtype, neonate N30, donor2.CNhs13035.10239-104A50.76
visual cortex - wildtype, neonate N30, donor3.CNhs13036.10240-104A60.00
visual cortex - wildtype, neonate N60-70, donor1.CNhs13037.10241-104A70.45
visual cortex - wildtype, neonate N60-70, donor2.CNhs13038.10242-104A80.00
visual cortex - wildtype, neonate N60-70, donor3.CNhs13039.10243-104A91.04
whole body, embryo E11.CNhs11014.324-5I80.21
whole body, embryo E12.CNhs10587.857-27C90.80
whole body, embryo E13.CNhs10512.372-23H20.00
whole body, embryo E14.5.CNhs10578.420-27D21.22
whole body, embryo E14.CNhs10519.395-14B11.05
whole body, embryo E16.CNhs10514.453-14F20.55
whole body, embryo E17.5, pool1 (internal control).CNhs10479.3139-67G51.56
whole body, embryo E17.5, pool1 (internal control).CNhs10495.3139-67G52.06
whole body, embryo E17.5, pool1 (internal control).CNhs10511.3139-67G52.25
whole body, embryo E17.5, pool1 (internal control).CNhs10527.3139-67G51.52
whole body, embryo E17.5, pool1 (internal control).CNhs10591.3139-67G52.79
whole body, embryo E17.5, pool1 (internal control).CNhs10607.3139-67G52.07
whole body, embryo E17.5, pool1 (internal control).CNhs10623.3139-67G52.06
whole body, embryo E17.5, pool1 (internal control).CNhs10639.3139-67G51.47
whole body, embryo E17.5, pool1 (internal control).CNhs10655.3139-67G51.78
whole body, embryo E17.5, pool1 (internal control).CNhs10725.3139-67G50.95
whole body, embryo E17.5, pool1 (internal control).CNhs10749.3139-67G52.78
whole body, embryo E17.5, pool1 (internal control).CNhs10840.3139-67G53.67
whole body, embryo E17.5, pool1 (internal control).CNhs10856.3139-67G50.82
whole body, embryo E17.5, pool1 (internal control).CNhs10880.3139-67G53.09
whole body, embryo E17.5, pool1 (internal control).CNhs11000.3139-67G52.40
whole body, embryo E17.5, pool1 (internal control).CNhs11024.3139-67G51.60
whole body, embryo E17.5, pool1 (internal control).CNhs11032.3139-67G51.43
whole body, embryo E17.5, pool1 (internal control).CNhs11048.3139-67G51.89
whole body, embryo E17.5, pool1 (internal control).CNhs11072.3139-67G51.79
whole body, embryo E17.5, pool1 (internal control).CNhs11080.3139-67G52.45
whole body, embryo E17.5, pool1 (internal control).CNhs11096.3139-67G53.84
whole body, embryo E17.5, pool1 (internal control).CNhs11120.3139-67G51.84
whole body, embryo E17.5, pool1 (internal control).CNhs11128.3139-67G51.90
whole body, embryo E17.5, pool1 (internal control).CNhs11184.3139-67G52.24
whole body, embryo E17.5, pool1 (internal control).CNhs11208.3139-67G52.73
whole body, embryo E17.5, pool1 (internal control).CNhs11216.3139-67G51.48
whole body, embryo E17.5, pool1 (internal control).CNhs11246.3139-67G52.46
whole body, embryo E17.5, pool1 (internal control).CNhs11278.3139-67G51.39
whole body, embryo E17.5.CNhs10513.490-9F91.35
whole body, embryo E17.CNhs10517.475-3I51.25
whole body, embryo E18.CNhs10516.493-3B33.04
whole body, neonate N00.CNhs10525.657-19C23.65
whole body, neonate N01.CNhs10576.659-23C63.25
whole body, neonate N06.CNhs10515.692-21D13.75
whole body, neonate N10.CNhs10518.761-6B45.33





  • Click each plot point to find sample in table


Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data

Uber anatomy
Ontology termp-valuen
endoderm-derived structure6.35e-13118
endoderm6.35e-13118
presumptive endoderm6.35e-13118
digestive system2.16e-12116
digestive tract2.16e-12116
primitive gut2.16e-12116
subdivision of digestive tract1.49e-11114
endo-epithelium3.57e-0969
digestive tract diverticulum5.11e-0923
sac5.11e-0923
liver5.52e-0922
epithelial sac5.52e-0922
digestive gland5.52e-0922
epithelium of foregut-midgut junction5.52e-0922
anatomical boundary5.52e-0922
hepatobiliary system5.52e-0922
foregut-midgut junction5.52e-0922
hepatic diverticulum5.52e-0922
liver primordium5.52e-0922
septum transversum5.52e-0922
liver bud5.52e-0922
intestine7.68e-0931
exocrine gland9.53e-0925
exocrine system9.53e-0925
subdivision of trunk1.36e-0866
organ component layer1.24e-0724
trunk region element3.47e-0779







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