FFCP PHASE1:Hg19::chr7:116199144..116199170,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C1984|description=CAGE_peak_at_chr7:116199144..116199170,+|id=chr7:116199144..116199170,+|ontology_enrichment_celltype=CL:0000055!2.96e-15!180;CL:0000057!9.97e-15!75;CL:0000220!6.30e-13!246;CL:0002321!1.40e-12!248;CL:0000222!9.56e-12!119;CL:0002620!9.66e-10!23;CL:0002139!8.35e-09!24;CL:0000136!1.57e-08!15;CL:0000076!7.58e-08!62;CL:0000213!4.62e-07!57;CL:0000215!4.62e-07!57|ontology_enrichment_celltype_v019=CL:0002620;2.39e-11;23!CL:0002139;5.52e-10;24!CL:0000136;7.95e-09;13|ontology_enrichment_celltype_v019_2=CL:0000057,6.00e-14,76;CL:0002620,2.17e-11,23;CL:0000222,7.19e-11,121;CL:0002139,1.66e-10,24;CL:0000136,6.14e-10,15;CL:0002321,2.26e-08,250;CL:0000115,6.84e-08,36;CL:0000213,4.01e-07,58;CL:0000215,4.01e-07,58;CL:0000071,9.12e-07,18;CL:0002546,9.12e-07,18;CL:0000076,9.74e-07,63|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0003102!5.23e-15!95;UBERON:0000914!2.34e-11!83;UBERON:0002329!2.34e-11!83;UBERON:0003077!2.34e-11!83;UBERON:0003059!2.34e-11!83;UBERON:0007282!2.34e-11!83;UBERON:0009618!2.34e-11!83;UBERON:0007285!2.34e-11!83;UBERON:0002199!2.50e-11!45;UBERON:0002416!2.50e-11!45;UBERON:0002049!4.32e-11!79;UBERON:0007798!4.32e-11!79;UBERON:0000486!4.23e-10!82;UBERON:0000055!6.70e-10!69;UBERON:0000468!2.28e-09!659;UBERON:0002097!5.87e-09!40;UBERON:0004290!5.93e-09!70;UBERON:0004923!2.28e-08!57;UBERON:0002100!5.25e-08!216;UBERON:0001981!5.30e-08!60;UBERON:0007500!5.30e-08!60;UBERON:0004537!5.30e-08!60;UBERON:0006965!5.30e-08!60;UBERON:0004872!8.60e-08!84;UBERON:0000475!1.76e-07!365;UBERON:0000490!8.87e-07!138|ontology_enrichment_uberon_v019=UBERON:0002199;1.87e-10;46!UBERON:0002416;1.87e-10;46!UBERON:0002097;1.25e-08;41!UBERON:0003102;1.92e-08;50!UBERON:0001013;3.89e-07;14|ontology_enrichment_uberon_v019_2=UBERON:0003102,7.99e-18,99;UBERON:0002199,2.55e-14,46;UBERON:0002416,2.55e-14,46;UBERON:0002097,2.05e-11,41;UBERON:0000486,9.83e-10,83;UBERON:0002049,4.42e-09,78;UBERON:0007798,4.42e-09,78;UBERON:0004923,5.83e-09,66;UBERON:0007503,1.58e-08,78;UBERON:0002329,2.04e-08,71;UBERON:0003059,2.04e-08,71;UBERON:0007282,2.04e-08,71;UBERON:0004290,2.04e-08,71;UBERON:0009618,2.04e-08,71;UBERON:0000055,2.93e-08,68;UBERON:0007524,2.94e-08,73;UBERON:0003077,4.23e-08,72;UBERON:0007285,4.23e-08,72;UBERON:0000490,7.30e-08,148;UBERON:0001013,2.74e-07,14;UBERON:0004638,9.12e-07,18;UBERON:0001986,9.12e-07,18;UBERON:0004852,9.12e-07,18|phase1_expression=4.36028110249336,13.06013195735,2.96004248601539,11.0080628188443,4.46961094427288,2.61701557230111,10.1319951267324,6.94891860769514,4.44015567939725,1.22866968250754,0,0.436882744260345,1.31883489114227,2.47532705920093,3.97676850873499,8.74022690387308,2.41077811209591,2.92124036154949,3.90346239032406,1.23121058076788,0.816002764977012,0.626909442956176,1.14494394852423,2.73748850145768,0.753255837568817,0,0,0,0,0,0.464448369948228,3.67768489791571,1.50602959389125,1.84877005083394,0,0,0.293600439334847,0,0,0,0,0,0,0,0,0,0.232429036905685,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113309342697566,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.2786256184353,7.59022220007589,1.00267582127178,4.77993512570718,0,1.45990461090791,3.68685786939865,3.1042115644759,1.31752178539689,0.523916301990851,1.09288586487763,1.11235332835329,0,0,0.132957960518865,0,0,0,1.98762407366705,1.72046919021225,2.42998351125316,1.69592382577203,3.35599548967925,6.87795104850169,2.29894463190492,9.8198368484345,5.69226020298736,7.36385348082274,6.0424397566372,3.80136052859256,9.76248230192678,5.14728312484216,5.67099363517232,4.28638695763583,1.57170560838319,1.91439516821648,1.53316637465883,0,3.48083313467774,0,0,0,3.47880366186723,2.78587125662075,0.794455084879313,3.44203944898576,5.32002573297536,1.68203280042692,0,1.72667283892012,0.311211035399766,0.67355336034844,1.79808093424805,0.908144565869588,3.45705554687999,0.234321431833797,4.05808099879417,2.85235910772225,10.9097536802815,7.86811140913225,6.96053660782966,7.44389275521917,3.26646674007829,6.5102188175237,1.54988671763648,0,3.70900393917835,0.910161361938026,0,2.52504170931099,3.00284447692714,1.93944880838928,2.19488810440419,3.37136575378922,1.65261864797256,1.24775401476023,3.94657198515496,3.63047560991565,6.14602513362729,3.30100205692843,6.28620428354477,3.60696756063881,3.35010341396862,1.85653965465393,2.63079913935236,3.78650661366172,2.02509777013059,3.07127507955743,6.74518225781567,5.13835700960965,3.22165125389926,2.51239109112286,1.90922284413584,4.58887352622406,0.243947412259191,0,0,0.207322110030741,0,0.36497735907583,1.56449532329816,10.935095949279,0,4.64367928031979,8.66255378003503,2.24782920075703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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C1984 | |||
|description=CAGE_peak_at_chr7:116199144..116199170,+ | |||
|id=chr7:116199144..116199170,+ | |||
|ontology_enrichment_celltype=CL:0000055!2.96e-15!180;CL:0000057!9.97e-15!75;CL:0000220!6.30e-13!246;CL:0002321!1.40e-12!248;CL:0000222!9.56e-12!119;CL:0002620!9.66e-10!23;CL:0002139!8.35e-09!24;CL:0000136!1.57e-08!15;CL:0000076!7.58e-08!62;CL:0000213!4.62e-07!57;CL:0000215!4.62e-07!57 | |||
|ontology_enrichment_celltype_v019=CL:0002620;2.39e-11;23!CL:0002139;5.52e-10;24!CL:0000136;7.95e-09;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,6.00e-14,76;CL:0002620,2.17e-11,23;CL:0000222,7.19e-11,121;CL:0002139,1.66e-10,24;CL:0000136,6.14e-10,15;CL:0002321,2.26e-08,250;CL:0000115,6.84e-08,36;CL:0000213,4.01e-07,58;CL:0000215,4.01e-07,58;CL:0000071,9.12e-07,18;CL:0002546,9.12e-07,18;CL:0000076,9.74e-07,63 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003102!5.23e-15!95;UBERON:0000914!2.34e-11!83;UBERON:0002329!2.34e-11!83;UBERON:0003077!2.34e-11!83;UBERON:0003059!2.34e-11!83;UBERON:0007282!2.34e-11!83;UBERON:0009618!2.34e-11!83;UBERON:0007285!2.34e-11!83;UBERON:0002199!2.50e-11!45;UBERON:0002416!2.50e-11!45;UBERON:0002049!4.32e-11!79;UBERON:0007798!4.32e-11!79;UBERON:0000486!4.23e-10!82;UBERON:0000055!6.70e-10!69;UBERON:0000468!2.28e-09!659;UBERON:0002097!5.87e-09!40;UBERON:0004290!5.93e-09!70;UBERON:0004923!2.28e-08!57;UBERON:0002100!5.25e-08!216;UBERON:0001981!5.30e-08!60;UBERON:0007500!5.30e-08!60;UBERON:0004537!5.30e-08!60;UBERON:0006965!5.30e-08!60;UBERON:0004872!8.60e-08!84;UBERON:0000475!1.76e-07!365;UBERON:0000490!8.87e-07!138 | |||
|ontology_enrichment_uberon_v019=UBERON:0002199;1.87e-10;46!UBERON:0002416;1.87e-10;46!UBERON:0002097;1.25e-08;41!UBERON:0003102;1.92e-08;50!UBERON:0001013;3.89e-07;14 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003102,7.99e-18,99;UBERON:0002199,2.55e-14,46;UBERON:0002416,2.55e-14,46;UBERON:0002097,2.05e-11,41;UBERON:0000486,9.83e-10,83;UBERON:0002049,4.42e-09,78;UBERON:0007798,4.42e-09,78;UBERON:0004923,5.83e-09,66;UBERON:0007503,1.58e-08,78;UBERON:0002329,2.04e-08,71;UBERON:0003059,2.04e-08,71;UBERON:0007282,2.04e-08,71;UBERON:0004290,2.04e-08,71;UBERON:0009618,2.04e-08,71;UBERON:0000055,2.93e-08,68;UBERON:0007524,2.94e-08,73;UBERON:0003077,4.23e-08,72;UBERON:0007285,4.23e-08,72;UBERON:0000490,7.30e-08,148;UBERON:0001013,2.74e-07,14;UBERON:0004638,9.12e-07,18;UBERON:0001986,9.12e-07,18;UBERON:0004852,9.12e-07,18 | |||
|phase1_expression=4.36028110249336,13.06013195735,2.96004248601539,11.0080628188443,4.46961094427288,2.61701557230111,10.1319951267324,6.94891860769514,4.44015567939725,1.22866968250754,0,0.436882744260345,1.31883489114227,2.47532705920093,3.97676850873499,8.74022690387308,2.41077811209591,2.92124036154949,3.90346239032406,1.23121058076788,0.816002764977012,0.626909442956176,1.14494394852423,2.73748850145768,0.753255837568817,0,0,0,0,0,0.464448369948228,3.67768489791571,1.50602959389125,1.84877005083394,0,0,0.293600439334847,0,0,0,0,0,0,0,0,0,0.232429036905685,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113309342697566,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.2786256184353,7.59022220007589,1.00267582127178,4.77993512570718,0,1.45990461090791,3.68685786939865,3.1042115644759,1.31752178539689,0.523916301990851,1.09288586487763,1.11235332835329,0,0,0.132957960518865,0,0,0,1.98762407366705,1.72046919021225,2.42998351125316,1.69592382577203,3.35599548967925,6.87795104850169,2.29894463190492,9.8198368484345,5.69226020298736,7.36385348082274,6.0424397566372,3.80136052859256,9.76248230192678,5.14728312484216,5.67099363517232,4.28638695763583,1.57170560838319,1.91439516821648,1.53316637465883,0,3.48083313467774,0,0,0,3.47880366186723,2.78587125662075,0.794455084879313,3.44203944898576,5.32002573297536,1.68203280042692,0,1.72667283892012,0.311211035399766,0.67355336034844,1.79808093424805,0.908144565869588,3.45705554687999,0.234321431833797,4.05808099879417,2.85235910772225,10.9097536802815,7.86811140913225,6.96053660782966,7.44389275521917,3.26646674007829,6.5102188175237,1.54988671763648,0,3.70900393917835,0.910161361938026,0,2.52504170931099,3.00284447692714,1.93944880838928,2.19488810440419,3.37136575378922,1.65261864797256,1.24775401476023,3.94657198515496,3.63047560991565,6.14602513362729,3.30100205692843,6.28620428354477,3.60696756063881,3.35010341396862,1.85653965465393,2.63079913935236,3.78650661366172,2.02509777013059,3.07127507955743,6.74518225781567,5.13835700960965,3.22165125389926,2.51239109112286,1.90922284413584,4.58887352622406,0.243947412259191,0,0,0.207322110030741,0,0.36497735907583,1.56449532329816,10.935095949279,0,4.64367928031979,8.66255378003503,2.24782920075703,1.34867752062481,1.20505514941741,1.10293972732394,1.74303555273925,0.71181185733329,0.674156540800822,1.17732879075208,0.769494313892781,3.69077727312324,0,0.8231480226628,0,0,0,0,0,0.122988438543114,1.02940686179115,6.03626569747441,1.1240175325762,3.61904300681871,2.87024179991442,0.325808305310325,4.15973914111831,5.77325368101093,2.31860809950154,0.234817388471643,3.89789408954899,7.40776820122577,9.32245345949531,3.1608175918371,2.57545848628462,0,0,0,2.81201501960331,2.01578553838631,1.70130116690864,2.5971971583826,3.77824120068151,1.91691339582606,0,0,0,0,0,0.253991577168676,0,0,1.71072446022705,0.411309970813294,0.300343057843917,0.857479297891735,0.448524337381443,1.30788020649984,2.3468251462704,0.775630294546667,0,5.917119267892,4.25500986535793,3.12022310734098,1.28603687131071,0,1.0656887160644,0.57191197463259,0,1.64648067356154,4.56030658011229,0.710783897485092,0.791951872933429,0.602878754119172,0,0.699810938274399,0,0,0,3.59437283237374,3.44585807502342,0,10.2794727733981,10.0683398049688,5.72995082367666,0,0,0,0,0.254094624222463,0,0.773288812777695,0,0.637938751653163,0,0,0,0.858840442033979,1.00034104211935,1.08506009479894,5.8231841228626,31.0466440507061,6.15039418632345,6.44277782459923,3.31040709700491,0,0,3.32112799267718,0.921845842708516,8.25394337446787,0.195801157462741,0.343143423810856,0,0,0,2.12189300012382,9.98612637062982,3.32629322662648,1.98486246255021,0.920771839728375,2.24528075546459,2.43464383585832,2.04682899626681,2.0911009748669,4.45254199334973,9.25258162815933,4.08391968220192,4.27061211271807,5.19254429183621,9.29683027679674,0,9.82481704486096,0.828728900423067,1.49258782613989,4.37018803216121,2.09799063935079,0,0.15403067420883,0,0,0.73886140225013,2.27466768141793,3.06168669497728,3.02282282542995,3.08454505380579,0.270946437543853,0,0.254876273045038,0,0.223874754722178,0,0,0,0.328014645699706,0,0.824328093181778,0,0,0.574265537996172,9.1008434445113,0,1.16004861950546,7.39433362150293,6.44715433849744,5.92697261683481,3.54486808065303,6.38073453222605,5.36927752721436,0.890320356467374,2.14870389969272,1.92190067365106,0.127612712494584,0.50578890427775,8.36721988735114,2.51849877464512,0,0.924100740528266,0.532306030317022,0.869932992075073,1.11194531462352,1.14499909393593,1.48863347743867,1.89827654831236,1.14378116354295,0.767693373934002,3.85145089230528,1.59101623962968,3.13979456079692,1.79872457583315,2.47083326762449,2.00281083987667,0.404364963146632,1.58510321173008,0,0.48763373908959,2.19342140668156,1.05650146756755,2.59349831675173,3.39373036688911,1.13008116620243,0.551365343546124,2.65375590096488,3.06915619677634,0,3.27947376023316,0.202910376962704,0.6196469961995,1.126782410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| |||
|short_description=p@chr7:116199144..116199170,+ | |||
}} |
Revision as of 22:51, 13 September 2013
Short description: | p@chr7:116199144..116199170, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr7:116199144..116199170, + |
Coexpression cluster: | C1984_Olfactory_mesenchymal_basal_leiomyoma_normal_tenocyte_Myoblast |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 6.00e-14 | 76 |
skin fibroblast | 2.17e-11 | 23 |
mesodermal cell | 7.19e-11 | 121 |
endothelial cell of vascular tree | 1.66e-10 | 24 |
fat cell | 6.14e-10 | 15 |
embryonic cell | 2.26e-08 | 250 |
endothelial cell | 6.84e-08 | 36 |
lining cell | 4.01e-07 | 58 |
barrier cell | 4.01e-07 | 58 |
blood vessel endothelial cell | 9.12e-07 | 18 |
embryonic blood vessel endothelial progenitor cell | 9.12e-07 | 18 |
squamous epithelial cell | 9.74e-07 | 63 |
Ontology term | p-value | n |
---|---|---|
surface structure | 7.99e-18 | 99 |
integument | 2.55e-14 | 46 |
integumental system | 2.55e-14 | 46 |
skin of body | 2.05e-11 | 41 |
multilaminar epithelium | 9.83e-10 | 83 |
vasculature | 4.42e-09 | 78 |
vascular system | 4.42e-09 | 78 |
organ component layer | 5.83e-09 | 66 |
epithelial vesicle | 1.58e-08 | 78 |
somite | 2.04e-08 | 71 |
presomitic mesoderm | 2.04e-08 | 71 |
presumptive segmental plate | 2.04e-08 | 71 |
dermomyotome | 2.04e-08 | 71 |
trunk paraxial mesoderm | 2.04e-08 | 71 |
vessel | 2.93e-08 | 68 |
dense mesenchyme tissue | 2.94e-08 | 73 |
paraxial mesoderm | 4.23e-08 | 72 |
presumptive paraxial mesoderm | 4.23e-08 | 72 |
unilaminar epithelium | 7.30e-08 | 148 |
adipose tissue | 2.74e-07 | 14 |
blood vessel endothelium | 9.12e-07 | 18 |
endothelium | 9.12e-07 | 18 |
cardiovascular system endothelium | 9.12e-07 | 18 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.