FFCP PHASE1:Hg19::chr6:150690140..150690175,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=389434|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=21071|TSSclassifier=S|UniProt=C9JXJ9,F6VN83|association_with_transcript=7bp_to_ENST00000392255,ENST00000500320_5end|coexpression_cluster_id=C113|description=CAGE_peak_1_at_IYD_5end|id=chr6:150690140..150690175,+|ontology_enrichment_celltype=CL:0000223!6.87e-09!59|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_development_v019=UBERON:0006595;1.31e-07;86!UBERON:0003104;3.27e-07;31|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:3493;1.66e-10;2|ontology_enrichment_disease_v019_2=DOID:3493,2.13e-10,2|ontology_enrichment_uberon=UBERON:0004921!4.77e-22!129;UBERON:0004185!4.77e-22!129;UBERON:0004119!2.10e-21!169;UBERON:0000925!2.10e-21!169;UBERON:0006595!2.10e-21!169;UBERON:0001007!1.37e-20!155;UBERON:0001555!1.37e-20!155;UBERON:0007026!1.37e-20!155;UBERON:0005409!3.28e-16!35;UBERON:0000160!2.32e-14!27;UBERON:0000077!4.87e-14!130;UBERON:0009856!1.75e-12!26;UBERON:0007023!3.03e-12!115;UBERON:0009854!3.76e-12!23;UBERON:0000059!5.02e-12!11;UBERON:0009497!4.43e-11!25;UBERON:0000015!4.43e-11!25;UBERON:0002423!4.43e-11!25;UBERON:0006235!4.43e-11!25;UBERON:0004161!4.43e-11!25;UBERON:0007499!7.37e-11!25;UBERON:0003929!7.68e-11!54;UBERON:0001041!1.07e-10!98;UBERON:0005911!1.07e-10!82;UBERON:0008835!1.79e-10!22;UBERON:0003894!1.79e-10!22;UBERON:0004907!2.00e-09!5;UBERON:0001155!5.41e-08!9;UBERON:0000466!9.18e-08!126;UBERON:0000481!1.44e-07!347;UBERON:0000341!2.68e-07!2;UBERON:0001052!5.02e-07!4;UBERON:0003127!6.44e-07!2|ontology_enrichment_uberon_v019=UBERON:0005409;1.37e-24;22!UBERON:0000160;1.26e-21;17!UBERON:0004921;3.96e-17;33!UBERON:0000341;8.61e-12;2!UBERON:0000059;2.41e-11;11!UBERON:0003127;4.08e-11;2!UBERON:0002108;4.68e-10;4!UBERON:0004907;1.60e-09;5!UBERON:0001155;2.50e-09;9!UBERON:0002423;4.67e-09;25!UBERON:0001007;1.85e-08;81!UBERON:0000922;4.29e-07;49|ontology_enrichment_uberon_v019_2=UBERON:0000160,1.18e-21,17;UBERON:0005409,1.66e-21,25;UBERON:0001007,1.11e-17,145;UBERON:0001555,1.11e-17,145;UBERON:0007026,1.11e-17,145;UBERON:0004921,4.11e-17,118;UBERON:0004119,1.69e-15,160;UBERON:0000925,1.69e-15,160;UBERON:0006595,1.69e-15,160;UBERON:0000341,8.61e-12,2;UBERON:0000059,2.28e-11,11;UBERON:0003929,2.56e-11,54;UBERON:0003127,4.08e-11,2;UBERON:0002108,4.68e-10,4;UBERON:0009854,7.95e-10,23;UBERON:0004907,1.51e-09,5;UBERON:0001155,2.50e-09,9;UBERON:0011216,3.40e-09,223;UBERON:0005911,3.40e-09,82;UBERON:0009497,4.43e-09,25;UBERON:0000015,4.43e-09,25;UBERON:0002423,4.43e-09,25;UBERON:0006235,4.43e-09,25;UBERON:0004161,4.43e-09,25;UBERON:0009856,1.38e-08,26;UBERON:0008835,1.03e-07,22;UBERON:0003894,1.03e-07,22;UBERON:0001041,6.41e-07,87|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.2642004928033,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,38.0265104465493,1.96565443335525,2.36315962672562,0,21.8919420606742,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207328115540772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.54789651773816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,30.0879754011349,0,0,0,0,0,0,0,0,0,0,0,0,0,0.165284915360978,0.192190067365106,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,29.4670096431319,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13.0998378285754,0,0,0,0,0,0,0,0,0,0,0,0,0.996239941255349,2.21027132424918,0,0,0,0,0.0898683511473268,2.14825409610731,0,0.0986434056369336,0,1.11136990144637,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13.9939540719601,0,0.995261931078505,32.6408413017322,4.27721101453538,0,0,0,0.134802265961354,0,0,0,0.19566461893209,0,0.394584402849391,12.0990716048664,0,0,0,0,0,0,0,0,0,0.138674673013139,0.347119476670262,0,0,0.698906672968121,0,0,0,0,0,0,0,0,0,0,0,0,25.6143593687223,0,0.144090417154106,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.229160424011684,0,0.199679000498991,0,0,0,0,0,0.157566364614447,0,0.13480708770837,0,0,0,0,0,0,0,0,0,0,0.335434687599266,7.09251365692784,3.67182116944987,0,0,0,0,0,0,0,0,0,0,0,0,0,18.0259247424041,2.65013777824443,0,0,0.342173675768659,0,0.854299300541557,1.57204305099666,1.24271716604159,0,0,0,0,0,0,0,0,0.785270481251171,0,0,0,0,0.110929051536852,0.18628920882415,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=389434 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=21071 | |||
|TSSclassifier=S | |||
|UniProt=C9JXJ9,F6VN83 | |||
|association_with_transcript=7bp_to_ENST00000392255,ENST00000500320_5end | |||
|coexpression_cluster_id=C113 | |||
|description=CAGE_peak_1_at_IYD_5end | |||
|id=chr6:150690140..150690175,+ | |||
|ontology_enrichment_celltype=CL:0000223!6.87e-09!59 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006595;1.31e-07;86!UBERON:0003104;3.27e-07;31 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3493;1.66e-10;2 | |||
|ontology_enrichment_disease_v019_2=DOID:3493,2.13e-10,2 | |||
|ontology_enrichment_uberon=UBERON:0004921!4.77e-22!129;UBERON:0004185!4.77e-22!129;UBERON:0004119!2.10e-21!169;UBERON:0000925!2.10e-21!169;UBERON:0006595!2.10e-21!169;UBERON:0001007!1.37e-20!155;UBERON:0001555!1.37e-20!155;UBERON:0007026!1.37e-20!155;UBERON:0005409!3.28e-16!35;UBERON:0000160!2.32e-14!27;UBERON:0000077!4.87e-14!130;UBERON:0009856!1.75e-12!26;UBERON:0007023!3.03e-12!115;UBERON:0009854!3.76e-12!23;UBERON:0000059!5.02e-12!11;UBERON:0009497!4.43e-11!25;UBERON:0000015!4.43e-11!25;UBERON:0002423!4.43e-11!25;UBERON:0006235!4.43e-11!25;UBERON:0004161!4.43e-11!25;UBERON:0007499!7.37e-11!25;UBERON:0003929!7.68e-11!54;UBERON:0001041!1.07e-10!98;UBERON:0005911!1.07e-10!82;UBERON:0008835!1.79e-10!22;UBERON:0003894!1.79e-10!22;UBERON:0004907!2.00e-09!5;UBERON:0001155!5.41e-08!9;UBERON:0000466!9.18e-08!126;UBERON:0000481!1.44e-07!347;UBERON:0000341!2.68e-07!2;UBERON:0001052!5.02e-07!4;UBERON:0003127!6.44e-07!2 | |||
|ontology_enrichment_uberon_v019=UBERON:0005409;1.37e-24;22!UBERON:0000160;1.26e-21;17!UBERON:0004921;3.96e-17;33!UBERON:0000341;8.61e-12;2!UBERON:0000059;2.41e-11;11!UBERON:0003127;4.08e-11;2!UBERON:0002108;4.68e-10;4!UBERON:0004907;1.60e-09;5!UBERON:0001155;2.50e-09;9!UBERON:0002423;4.67e-09;25!UBERON:0001007;1.85e-08;81!UBERON:0000922;4.29e-07;49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,1.18e-21,17;UBERON:0005409,1.66e-21,25;UBERON:0001007,1.11e-17,145;UBERON:0001555,1.11e-17,145;UBERON:0007026,1.11e-17,145;UBERON:0004921,4.11e-17,118;UBERON:0004119,1.69e-15,160;UBERON:0000925,1.69e-15,160;UBERON:0006595,1.69e-15,160;UBERON:0000341,8.61e-12,2;UBERON:0000059,2.28e-11,11;UBERON:0003929,2.56e-11,54;UBERON:0003127,4.08e-11,2;UBERON:0002108,4.68e-10,4;UBERON:0009854,7.95e-10,23;UBERON:0004907,1.51e-09,5;UBERON:0001155,2.50e-09,9;UBERON:0011216,3.40e-09,223;UBERON:0005911,3.40e-09,82;UBERON:0009497,4.43e-09,25;UBERON:0000015,4.43e-09,25;UBERON:0002423,4.43e-09,25;UBERON:0006235,4.43e-09,25;UBERON:0004161,4.43e-09,25;UBERON:0009856,1.38e-08,26;UBERON:0008835,1.03e-07,22;UBERON:0003894,1.03e-07,22;UBERON:0001041,6.41e-07,87 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.2642004928033,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,38.0265104465493,1.96565443335525,2.36315962672562,0,21.8919420606742,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207328115540772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.54789651773816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,30.0879754011349,0,0,0,0,0,0,0,0,0,0,0,0,0,0.165284915360978,0.192190067365106,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,29.4670096431319,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13.0998378285754,0,0,0,0,0,0,0,0,0,0,0,0,0.996239941255349,2.21027132424918,0,0,0,0,0.0898683511473268,2.14825409610731,0,0.0986434056369336,0,1.11136990144637,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13.9939540719601,0,0.995261931078505,32.6408413017322,4.27721101453538,0,0,0,0.134802265961354,0,0,0,0.19566461893209,0,0.394584402849391,12.0990716048664,0,0,0,0,0,0,0,0,0,0.138674673013139,0.347119476670262,0,0,0.698906672968121,0,0,0,0,0,0,0,0,0,0,0,0,25.6143593687223,0,0.144090417154106,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.229160424011684,0,0.199679000498991,0,0,0,0,0,0.157566364614447,0,0.13480708770837,0,0,0,0,0,0,0,0,0,0,0.335434687599266,7.09251365692784,3.67182116944987,0,0,0,0,0,0,0,0,0,0,0,0,0,18.0259247424041,2.65013777824443,0,0,0.342173675768659,0,0.854299300541557,1.57204305099666,1.24271716604159,0,0,0,0,0,0,0,0,0.785270481251171,0,0,0,0,0.110929051536852,0.18628920882415,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.42769420259154,0,0,0,0,0,0,0,0,0,0,0,0,0.147856086217045,0,0,0,0,0,0.548257766857182,0,0,0,0,0,0,0,0,0,0,1.69924332442079,0,0,0,0.078493092850514,0,1.68163297988273,0.913158720509496,0,0,0,0,0,0,0,0,0,0,1.29068207646083,0,0,0,0,0,0,0,1.07965256976767,1.34109717480496,0,0,0,0,0,0,0,0,0,0,50.5490735607038,10.053739783182,0,0,0,0,0,0,0,0,0,0,0,0,0,2.92134555298607,0,0,0,0,0,13.7546978534004,0,0,0,0,0,0,0,0,0,0,0.151557396436479,0.267964130156178,0,0,23.6689719910089,203.307024470034,0,0,0,543.992261803475,320.355744498778,0,0.342233301085281,0.404112318087525,4.2316101181679,7.65118820055831,0,0,0,0,2.34640942403454,0,0,0,0,0 | |||
|short_description=p1@IYD | |||
}} |
Revision as of 18:43, 13 September 2013
Short description: | p1@IYD |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_IYD_5end |
Coexpression cluster: | C113_thyroid_throat_lung_lymph_small_colon_trachea |
Association with transcript: | 7bp_to_ENST00000392255, ENST00000500320_5end |
EntrezGene: | IYD |
HGNC: | 21071 |
UniProt: | C9JXJ9F6VN83 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestine | 1.18e-21 | 17 |
gastrointestinal system | 1.66e-21 | 25 |
digestive system | 1.11e-17 | 145 |
digestive tract | 1.11e-17 | 145 |
primitive gut | 1.11e-17 | 145 |
subdivision of digestive tract | 4.11e-17 | 118 |
endoderm-derived structure | 1.69e-15 | 160 |
endoderm | 1.69e-15 | 160 |
presumptive endoderm | 1.69e-15 | 160 |
throat | 8.61e-12 | 2 |
large intestine | 2.28e-11 | 11 |
gut epithelium | 2.56e-11 | 54 |
open tracheal system trachea | 4.08e-11 | 2 |
small intestine | 4.68e-10 | 4 |
digestive tract diverticulum | 7.95e-10 | 23 |
lower digestive tract | 1.51e-09 | 5 |
colon | 2.50e-09 | 9 |
organ system subdivision | 3.40e-09 | 223 |
endo-epithelium | 3.40e-09 | 82 |
epithelium of foregut-midgut junction | 4.43e-09 | 25 |
anatomical boundary | 4.43e-09 | 25 |
hepatobiliary system | 4.43e-09 | 25 |
foregut-midgut junction | 4.43e-09 | 25 |
septum transversum | 4.43e-09 | 25 |
sac | 1.38e-08 | 26 |
hepatic diverticulum | 1.03e-07 | 22 |
liver primordium | 1.03e-07 | 22 |
foregut | 6.41e-07 | 87 |
Ontology term | p-value | n |
---|---|---|
signet ring cell adenocarcinoma | 2.13e-10 | 2 |
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