FFCP PHASE1:Mm9::chr17:86020468..86020504,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=20473|HGNC=|MCL_coexpression_id=578|UniProt=Q52KB8|association_with_transcript=97bp_to_ENSMUST00000043819,ENSMUST00000162695_5end|description=CAGE_peak_6_at_Six3_5end|id=chr17:86020468..86020504,+|ontology_enrichment_celltype=CL:0002319!4.18e-09!43;CL:0000221!9.47e-09!44;CL:0000133!9.47e-09!44;CL:0000117!2.49e-08!23;CL:0000337!2.49e-08!23;CL:0000055!1.30e-07!50;CL:0002453!1.70e-07!8|ontology_enrichment_celltype_v019_2=CL:0002453,2.79e-10,8;CL:0000128,4.29e-10,6;CL:0000126,4.29e-10,6;CL:0000127,4.29e-10,6;CL:0002319,8.61e-09,43;CL:0000221,1.61e-08,44;CL:0000133,1.61e-08,44;CL:0000333,4.36e-08,10;CL:0000095,4.36e-08,10;CL:0000243,4.36e-08,10;CL:0000123,4.36e-08,10;CL:0000125,4.36e-08,10;CL:0000030,4.36e-08,10;CL:0000339,4.36e-08,10;CL:0002608,9.02e-08,3;CL:0002613,2.12e-07,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0003056!6.09e-27!49;UBERON:0000033!1.62e-22!63;UBERON:0003080!6.31e-17!40;UBERON:0004121!3.29e-16!102;UBERON:0000924!3.29e-16!102;UBERON:0006601!3.29e-16!102;UBERON:0002346!3.37e-16!71;UBERON:0003075!3.37e-16!71;UBERON:0007284!3.37e-16!71;UBERON:0002616!4.29e-16!49;UBERON:0002780!5.15e-16!39;UBERON:0001890!5.15e-16!39;UBERON:0006240!5.15e-16!39;UBERON:0000955!1.40e-15!50;UBERON:0006238!1.40e-15!50;UBERON:0001017!3.40e-15!73;UBERON:0005743!3.40e-15!73;UBERON:0000073!1.77e-14!75;UBERON:0001016!1.77e-14!75;UBERON:0001894!3.23e-13!10;UBERON:0006222!3.23e-13!10;UBERON:0007811!3.81e-13!86;UBERON:0001049!2.62e-12!52;UBERON:0005068!2.62e-12!52;UBERON:0006241!2.62e-12!52;UBERON:0007135!2.62e-12!52;UBERON:0000970!3.58e-12!9;UBERON:0000019!3.58e-12!9;UBERON:0000047!3.58e-12!9;UBERON:0004088!3.58e-12!9;UBERON:0002104!3.58e-12!9;UBERON:0001456!3.58e-12!9;UBERON:0003072!3.58e-12!9;UBERON:0003071!3.58e-12!9;UBERON:0004128!3.58e-12!9;UBERON:0000007!1.75e-11!8;UBERON:0003296!1.75e-11!8;UBERON:0010133!1.75e-11!8;UBERON:0000153!5.11e-11!94;UBERON:0001444!1.78e-09!11;UBERON:0002420!3.24e-09!8;UBERON:0007245!3.24e-09!8;UBERON:0010009!3.24e-09!8;UBERON:0010011!3.24e-09!8;UBERON:0000454!3.24e-09!8;UBERON:0000020!1.80e-08!12;UBERON:0001032!1.80e-08!12;UBERON:0004456!1.80e-08!12;UBERON:0005085!1.26e-07!13;UBERON:0002791!6.48e-07!29;UBERON:0003528!6.48e-07!29;UBERON:0001893!6.48e-07!29;UBERON:0000369!6.60e-07!5;UBERON:0002435!6.60e-07!5;UBERON:0000204!6.60e-07!5;UBERON:0010082!6.60e-07!5|ontology_enrichment_uberon_v019_2=UBERON:0003056,1.13e-39,49;UBERON:0002346,3.08e-31,64;UBERON:0003075,3.08e-31,64;UBERON:0007284,3.08e-31,64;UBERON:0004121,9.00e-27,95;UBERON:0000924,9.00e-27,95;UBERON:0006601,9.00e-27,95;UBERON:0010371,1.51e-26,73;UBERON:0003080,2.59e-22,40;UBERON:0000970,1.18e-21,9;UBERON:0000019,1.18e-21,9;UBERON:0000047,1.18e-21,9;UBERON:0010312,1.18e-21,9;UBERON:0004088,1.18e-21,9;UBERON:0002104,1.18e-21,9;UBERON:0001456,1.18e-21,9;UBERON:0003072,1.18e-21,9;UBERON:0004128,1.18e-21,9;UBERON:0003071,1.18e-21,9;UBERON:0002616,5.60e-21,46;UBERON:0002780,9.08e-21,39;UBERON:0001890,9.08e-21,39;UBERON:0006240,9.08e-21,39;UBERON:0000955,2.02e-20,47;UBERON:0006238,2.02e-20,47;UBERON:0000007,2.40e-20,8;UBERON:0003296,2.40e-20,8;UBERON:0010133,2.40e-20,8;UBERON:0010314,1.18e-19,92;UBERON:0001894,1.29e-19,10;UBERON:0006222,1.29e-19,10;UBERON:0001017,3.50e-18,73;UBERON:0001049,5.94e-18,52;UBERON:0005068,5.94e-18,52;UBERON:0006241,5.94e-18,52;UBERON:0007135,5.94e-18,52;UBERON:0001016,1.56e-17,75;UBERON:0001444,2.15e-17,11;UBERON:0000073,4.29e-17,54;UBERON:0000020,8.53e-16,12;UBERON:0001032,8.53e-16,12;UBERON:0004456,8.53e-16,12;UBERON:0000033,1.92e-14,13;UBERON:0005085,1.92e-14,13;UBERON:0000369,1.08e-11,5;UBERON:0002435,1.08e-11,5;UBERON:0000204,1.08e-11,5;UBERON:0010082,1.08e-11,5;UBERON:0002420,6.81e-10,8;UBERON:0007245,6.81e-10,8;UBERON:0010009,6.81e-10,8;UBERON:0010011,6.81e-10,8;UBERON:0000454,6.81e-10,8;UBERON:0001954,1.62e-08,7;UBERON:0003022,1.62e-08,7;UBERON:0002421,1.62e-08,7;UBERON:0000349,1.62e-08,7;UBERON:0002600,1.62e-08,7;UBERON:0000119,1.05e-07,176;UBERON:0003528,1.07e-07,29;UBERON:0002791,1.07e-07,29;UBERON:0001893,1.07e-07,29;UBERON:0000483,3.82e-07,174|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101376931219515,0,0,7.19483016055474,3.51497892375155,4.86074747685709,2.2397827460058,2.87505128729943,0,0,0,0,0,0,1.41621522601718,1.05798195854407,0.633831403506179,1.35537812827653,0,0,0,0,1.19840044207362,0.384218305321555,0,0.135005938331691,0,0,0,2.9397791811589,4.79227355091182,2.75765635983006,0,0.766124028511126,0.614426133024974,2.1101806036831,2.10421580285542,3.12548022334056,0.279182999001381,1.12552522006336,0.45839474333043,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.79748767285787,5.03250663100489,3.26701315493447,0.173824320192276,0,1.0389402227978,0.973447578406546,0,0,0,1.68353484709179,5.20481771850815,2.29902104433473,8.46292010085141,6.17889753126432,7.75616090325138,7.17436833595159,6.1843138209421,4.13925393182425,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205809224758569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184753190166605,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.222798674082394,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.76615448055303,7.92268813737765,11.5129228566652,10.9311887866112,8.86701168211368,4.63758925765383,4.77192159746151,6.08929898229199,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221985953374065,0.269141569828427,0.503653849092235,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.19707462020309,0.170733605754134,0.972426868273176,0.419226325255965,0.367687016900028,0.222246727801615,0.206035057238894,0.320919209591815,0.252697211763798,0.25347929989024,0.377252682772152,0.187283014939765,0.256100609619477,0.17230640686684,0,0.463537303779422,0.192909220463705,0.412085900803307,0.294397840268795,0,0,0,0.436039249896986,0.376437521661322,0.0846146078916765,0.73171189149109,0,0.135804113845862,0,0.118635018124174,0,0,0.309873682371932,0,0.749431733813838,0.233931608445408,0.429742108096597,0,0,0|short_description=p6@Six3}} | ||
|EntrezGene=20473 | |||
|HGNC= | |||
|MCL_coexpression_id=578 | |||
|UniProt=Q52KB8 | |||
|association_with_transcript=97bp_to_ENSMUST00000043819,ENSMUST00000162695_5end | |||
|description=CAGE_peak_6_at_Six3_5end | |||
|id=chr17:86020468..86020504,+ | |||
|ontology_enrichment_celltype=CL:0002319!4.18e-09!43;CL:0000221!9.47e-09!44;CL:0000133!9.47e-09!44;CL:0000117!2.49e-08!23;CL:0000337!2.49e-08!23;CL:0000055!1.30e-07!50;CL:0002453!1.70e-07!8 | |||
|ontology_enrichment_celltype_v019_2=CL:0002453,2.79e-10,8;CL:0000128,4.29e-10,6;CL:0000126,4.29e-10,6;CL:0000127,4.29e-10,6;CL:0002319,8.61e-09,43;CL:0000221,1.61e-08,44;CL:0000133,1.61e-08,44;CL:0000333,4.36e-08,10;CL:0000095,4.36e-08,10;CL:0000243,4.36e-08,10;CL:0000123,4.36e-08,10;CL:0000125,4.36e-08,10;CL:0000030,4.36e-08,10;CL:0000339,4.36e-08,10;CL:0002608,9.02e-08,3;CL:0002613,2.12e-07,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003056!6.09e-27!49;UBERON:0000033!1.62e-22!63;UBERON:0003080!6.31e-17!40;UBERON:0004121!3.29e-16!102;UBERON:0000924!3.29e-16!102;UBERON:0006601!3.29e-16!102;UBERON:0002346!3.37e-16!71;UBERON:0003075!3.37e-16!71;UBERON:0007284!3.37e-16!71;UBERON:0002616!4.29e-16!49;UBERON:0002780!5.15e-16!39;UBERON:0001890!5.15e-16!39;UBERON:0006240!5.15e-16!39;UBERON:0000955!1.40e-15!50;UBERON:0006238!1.40e-15!50;UBERON:0001017!3.40e-15!73;UBERON:0005743!3.40e-15!73;UBERON:0000073!1.77e-14!75;UBERON:0001016!1.77e-14!75;UBERON:0001894!3.23e-13!10;UBERON:0006222!3.23e-13!10;UBERON:0007811!3.81e-13!86;UBERON:0001049!2.62e-12!52;UBERON:0005068!2.62e-12!52;UBERON:0006241!2.62e-12!52;UBERON:0007135!2.62e-12!52;UBERON:0000970!3.58e-12!9;UBERON:0000019!3.58e-12!9;UBERON:0000047!3.58e-12!9;UBERON:0004088!3.58e-12!9;UBERON:0002104!3.58e-12!9;UBERON:0001456!3.58e-12!9;UBERON:0003072!3.58e-12!9;UBERON:0003071!3.58e-12!9;UBERON:0004128!3.58e-12!9;UBERON:0000007!1.75e-11!8;UBERON:0003296!1.75e-11!8;UBERON:0010133!1.75e-11!8;UBERON:0000153!5.11e-11!94;UBERON:0001444!1.78e-09!11;UBERON:0002420!3.24e-09!8;UBERON:0007245!3.24e-09!8;UBERON:0010009!3.24e-09!8;UBERON:0010011!3.24e-09!8;UBERON:0000454!3.24e-09!8;UBERON:0000020!1.80e-08!12;UBERON:0001032!1.80e-08!12;UBERON:0004456!1.80e-08!12;UBERON:0005085!1.26e-07!13;UBERON:0002791!6.48e-07!29;UBERON:0003528!6.48e-07!29;UBERON:0001893!6.48e-07!29;UBERON:0000369!6.60e-07!5;UBERON:0002435!6.60e-07!5;UBERON:0000204!6.60e-07!5;UBERON:0010082!6.60e-07!5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003056,1.13e-39,49;UBERON:0002346,3.08e-31,64;UBERON:0003075,3.08e-31,64;UBERON:0007284,3.08e-31,64;UBERON:0004121,9.00e-27,95;UBERON:0000924,9.00e-27,95;UBERON:0006601,9.00e-27,95;UBERON:0010371,1.51e-26,73;UBERON:0003080,2.59e-22,40;UBERON:0000970,1.18e-21,9;UBERON:0000019,1.18e-21,9;UBERON:0000047,1.18e-21,9;UBERON:0010312,1.18e-21,9;UBERON:0004088,1.18e-21,9;UBERON:0002104,1.18e-21,9;UBERON:0001456,1.18e-21,9;UBERON:0003072,1.18e-21,9;UBERON:0004128,1.18e-21,9;UBERON:0003071,1.18e-21,9;UBERON:0002616,5.60e-21,46;UBERON:0002780,9.08e-21,39;UBERON:0001890,9.08e-21,39;UBERON:0006240,9.08e-21,39;UBERON:0000955,2.02e-20,47;UBERON:0006238,2.02e-20,47;UBERON:0000007,2.40e-20,8;UBERON:0003296,2.40e-20,8;UBERON:0010133,2.40e-20,8;UBERON:0010314,1.18e-19,92;UBERON:0001894,1.29e-19,10;UBERON:0006222,1.29e-19,10;UBERON:0001017,3.50e-18,73;UBERON:0001049,5.94e-18,52;UBERON:0005068,5.94e-18,52;UBERON:0006241,5.94e-18,52;UBERON:0007135,5.94e-18,52;UBERON:0001016,1.56e-17,75;UBERON:0001444,2.15e-17,11;UBERON:0000073,4.29e-17,54;UBERON:0000020,8.53e-16,12;UBERON:0001032,8.53e-16,12;UBERON:0004456,8.53e-16,12;UBERON:0000033,1.92e-14,13;UBERON:0005085,1.92e-14,13;UBERON:0000369,1.08e-11,5;UBERON:0002435,1.08e-11,5;UBERON:0000204,1.08e-11,5;UBERON:0010082,1.08e-11,5;UBERON:0002420,6.81e-10,8;UBERON:0007245,6.81e-10,8;UBERON:0010009,6.81e-10,8;UBERON:0010011,6.81e-10,8;UBERON:0000454,6.81e-10,8;UBERON:0001954,1.62e-08,7;UBERON:0003022,1.62e-08,7;UBERON:0002421,1.62e-08,7;UBERON:0000349,1.62e-08,7;UBERON:0002600,1.62e-08,7;UBERON:0000119,1.05e-07,176;UBERON:0003528,1.07e-07,29;UBERON:0002791,1.07e-07,29;UBERON:0001893,1.07e-07,29;UBERON:0000483,3.82e-07,174 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101376931219515,0,0,7.19483016055474,3.51497892375155,4.86074747685709,2.2397827460058,2.87505128729943,0,0,0,0,0,0,1.41621522601718,1.05798195854407,0.633831403506179,1.35537812827653,0,0,0,0,1.19840044207362,0.384218305321555,0,0.135005938331691,0,0,0,2.9397791811589,4.79227355091182,2.75765635983006,0,0.766124028511126,0.614426133024974,2.1101806036831,2.10421580285542,3.12548022334056,0.279182999001381,1.12552522006336,0.45839474333043,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.79748767285787,5.03250663100489,3.26701315493447,0.173824320192276,0,1.0389402227978,0.973447578406546,0,0,0,1.68353484709179,5.20481771850815,2.29902104433473,8.46292010085141,6.17889753126432,7.75616090325138,7.17436833595159,6.1843138209421,4.13925393182425,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205809224758569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184753190166605,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.222798674082394,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.76615448055303,7.92268813737765,11.5129228566652,10.9311887866112,8.86701168211368,4.63758925765383,4.77192159746151,6.08929898229199,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221985953374065,0.269141569828427,0.503653849092235,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.19707462020309,0.170733605754134,0.972426868273176,0.419226325255965,0.367687016900028,0.222246727801615,0.206035057238894,0.320919209591815,0.252697211763798,0.25347929989024,0.377252682772152,0.187283014939765,0.256100609619477,0.17230640686684,0,0.463537303779422,0.192909220463705,0.412085900803307,0.294397840268795,0,0,0,0.436039249896986,0.376437521661322,0.0846146078916765,0.73171189149109,0,0.135804113845862,0,0.118635018124174,0,0,0.309873682371932,0,0.749431733813838,0.233931608445408,0.429742108096597,0,0,0 | |||
|short_description=p6@Six3 | |||
}} |
Revision as of 15:31, 13 September 2013
Short description: | p6@Six3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_6_at_Six3_5end |
Coexpression cluster: | MCL_coexpression_mm9:578 |
Association with transcript: | 97bp_to_ENSMUST00000043819, ENSMUST00000162695_5end |
EntrezGene: | Six3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
oligodendrocyte precursor cell | 2.79e-10 | 8 |
oligodendrocyte | 4.29e-10 | 6 |
macroglial cell | 4.29e-10 | 6 |
astrocyte | 4.29e-10 | 6 |
neural cell | 8.61e-09 | 43 |
ectodermal cell | 1.61e-08 | 44 |
neurectodermal cell | 1.61e-08 | 44 |
migratory neural crest cell | 4.36e-08 | 10 |
neuron associated cell | 4.36e-08 | 10 |
glial cell (sensu Vertebrata) | 4.36e-08 | 10 |
neuron associated cell (sensu Vertebrata) | 4.36e-08 | 10 |
glial cell | 4.36e-08 | 10 |
glioblast | 4.36e-08 | 10 |
glioblast (sensu Vertebrata) | 4.36e-08 | 10 |
hippocampal neuron | 9.02e-08 | 3 |
striatum neuron | 2.12e-07 | 3 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.