FFCP PHASE1:Mm9::chr13:63252894..63252907,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=104|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr13:63252894..63252907,+|id=chr13:63252894..63252907,+|ontology_enrichment_celltype=CL:0002563!2.79e-11!9;CL:0002251!2.79e-11!9;CL:0002250!6.63e-10!3|ontology_enrichment_celltype_v019_2=CL:0002250,5.70e-27,3;CL:0002563,1.91e-09,9;CL:0002251,1.91e-09,9|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000344!3.58e-25!15;UBERON:0001242!1.40e-20!13;UBERON:0000060!1.40e-20!13;UBERON:0001262!1.40e-20!13;UBERON:0004786!1.40e-20!13;UBERON:0000160!3.56e-20!43;UBERON:0005409!5.10e-17!59;UBERON:0004923!8.91e-15!24;UBERON:0003350!2.79e-11!9;UBERON:0004808!2.79e-11!9;UBERON:0001277!2.79e-11!9;UBERON:0001007!1.32e-09!128;UBERON:0001555!1.32e-09!128;UBERON:0007026!1.32e-09!128;UBERON:0004119!2.25e-09!130;UBERON:0000925!2.25e-09!130;UBERON:0006595!2.25e-09!130;UBERON:0000331!2.61e-09!3;UBERON:0002116!2.61e-09!3;UBERON:0001204!2.61e-09!3;UBERON:0001168!2.61e-09!3;UBERON:0000485!4.24e-09!11;UBERON:0004921!6.35e-08!126;UBERON:0004185!6.35e-08!126;UBERON:0001155!4.21e-07!2;UBERON:0000059!4.21e-07!2|ontology_enrichment_uberon_v019_2=UBERON:0000160,2.22e-22,31;UBERON:0001155,1.94e-18,2;UBERON:0000059,1.94e-18,2;UBERON:0005409,3.14e-18,47;UBERON:0001242,7.89e-17,13;UBERON:0001262,7.89e-17,13;UBERON:0004786,7.89e-17,13;UBERON:0000344,1.31e-14,15;UBERON:0000331,2.42e-12,3;UBERON:0002116,2.42e-12,3;UBERON:0001204,2.42e-12,3;UBERON:0001168,2.42e-12,3;UBERON:0001153,2.01e-10,1;UBERON:0001045,2.01e-10,1;UBERON:0002108,1.71e-09,4;UBERON:0003350,1.91e-09,9;UBERON:0004808,1.91e-09,9;UBERON:0001277,1.91e-09,9;UBERON:0004923,3.58e-09,24;UBERON:0000485,7.85e-08,11;UBERON:0004921,3.40e-07,114;UBERON:0001007,4.64e-07,116;UBERON:0001555,4.64e-07,116;UBERON:0007026,4.64e-07,116;UBERON:0004119,6.28e-07,118;UBERON:0000925,6.28e-07,118;UBERON:0006595,6.28e-07,118|phase1_expression=0,0.348975407639361,0,0,0,0.671517087647559,0.934450562382103,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17008658030214,0,0,0.319984845586813,0.45881856213434,0,0,0.215471232685889,1.33016393619462,2.01624103807945,0.443461021310609,0,0,0,2.02196133825892,3.32469290716985,2.24586291888606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.579728977403356,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.68510327831436,0,0,0,0,0,0,0,0.125666591329675,0,0,0,0,0,0,7.45567044872489,0,0,1.27728527604296,0,0,0,0.149790639404823,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.330418782983798,0.264450566663544,0,0,0,0,0,0,0.474529061544512,0,0,0.198956472041151,0.58489226135736,0,3.02593269824572,2.38969527905241,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195133647857799,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.98931751764888,0,0,0,0,0.874442509889552,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0826534557253359,0,9.20266310371729,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214368379079066,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.145346416632329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p@chr13:63252894..63252907,+}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=104 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr13:63252894..63252907,+ | |||
|id=chr13:63252894..63252907,+ | |||
|ontology_enrichment_celltype=CL:0002563!2.79e-11!9;CL:0002251!2.79e-11!9;CL:0002250!6.63e-10!3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002250,5.70e-27,3;CL:0002563,1.91e-09,9;CL:0002251,1.91e-09,9 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000344!3.58e-25!15;UBERON:0001242!1.40e-20!13;UBERON:0000060!1.40e-20!13;UBERON:0001262!1.40e-20!13;UBERON:0004786!1.40e-20!13;UBERON:0000160!3.56e-20!43;UBERON:0005409!5.10e-17!59;UBERON:0004923!8.91e-15!24;UBERON:0003350!2.79e-11!9;UBERON:0004808!2.79e-11!9;UBERON:0001277!2.79e-11!9;UBERON:0001007!1.32e-09!128;UBERON:0001555!1.32e-09!128;UBERON:0007026!1.32e-09!128;UBERON:0004119!2.25e-09!130;UBERON:0000925!2.25e-09!130;UBERON:0006595!2.25e-09!130;UBERON:0000331!2.61e-09!3;UBERON:0002116!2.61e-09!3;UBERON:0001204!2.61e-09!3;UBERON:0001168!2.61e-09!3;UBERON:0000485!4.24e-09!11;UBERON:0004921!6.35e-08!126;UBERON:0004185!6.35e-08!126;UBERON:0001155!4.21e-07!2;UBERON:0000059!4.21e-07!2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,2.22e-22,31;UBERON:0001155,1.94e-18,2;UBERON:0000059,1.94e-18,2;UBERON:0005409,3.14e-18,47;UBERON:0001242,7.89e-17,13;UBERON:0001262,7.89e-17,13;UBERON:0004786,7.89e-17,13;UBERON:0000344,1.31e-14,15;UBERON:0000331,2.42e-12,3;UBERON:0002116,2.42e-12,3;UBERON:0001204,2.42e-12,3;UBERON:0001168,2.42e-12,3;UBERON:0001153,2.01e-10,1;UBERON:0001045,2.01e-10,1;UBERON:0002108,1.71e-09,4;UBERON:0003350,1.91e-09,9;UBERON:0004808,1.91e-09,9;UBERON:0001277,1.91e-09,9;UBERON:0004923,3.58e-09,24;UBERON:0000485,7.85e-08,11;UBERON:0004921,3.40e-07,114;UBERON:0001007,4.64e-07,116;UBERON:0001555,4.64e-07,116;UBERON:0007026,4.64e-07,116;UBERON:0004119,6.28e-07,118;UBERON:0000925,6.28e-07,118;UBERON:0006595,6.28e-07,118 | |||
|phase1_expression=0,0.348975407639361,0,0,0,0.671517087647559,0.934450562382103,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17008658030214,0,0,0.319984845586813,0.45881856213434,0,0,0.215471232685889,1.33016393619462,2.01624103807945,0.443461021310609,0,0,0,2.02196133825892,3.32469290716985,2.24586291888606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.579728977403356,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.68510327831436,0,0,0,0,0,0,0,0.125666591329675,0,0,0,0,0,0,7.45567044872489,0,0,1.27728527604296,0,0,0,0.149790639404823,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.330418782983798,0.264450566663544,0,0,0,0,0,0,0.474529061544512,0,0,0.198956472041151,0.58489226135736,0,3.02593269824572,2.38969527905241,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195133647857799,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.98931751764888,0,0,0,0,0.874442509889552,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0826534557253359,0,9.20266310371729,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214368379079066,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.145346416632329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr13:63252894..63252907,+ | |||
}} |
Revision as of 00:59, 13 September 2013
Short description: | p@chr13:63252894..63252907, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr13:63252894..63252907, + |
Coexpression cluster: | MCL_coexpression_mm9:104 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal crypt stem cell | 5.70e-27 | 3 |
intestinal epithelial cell | 1.91e-09 | 9 |
epithelial cell of alimentary canal | 1.91e-09 | 9 |
Ontology term | p-value | n |
---|---|---|
intestine | 2.22e-22 | 31 |
colon | 1.94e-18 | 2 |
large intestine | 1.94e-18 | 2 |
gastrointestinal system | 3.14e-18 | 47 |
intestinal mucosa | 7.89e-17 | 13 |
wall of intestine | 7.89e-17 | 13 |
gastrointestinal system mucosa | 7.89e-17 | 13 |
mucosa | 1.31e-14 | 15 |
ileal mucosa | 2.42e-12 | 3 |
ileum | 2.42e-12 | 3 |
mucosa of small intestine | 2.42e-12 | 3 |
wall of small intestine | 2.42e-12 | 3 |
caecum | 2.01e-10 | 1 |
midgut | 2.01e-10 | 1 |
small intestine | 1.71e-09 | 4 |
epithelium of mucosa | 1.91e-09 | 9 |
gastrointestinal system epithelium | 1.91e-09 | 9 |
intestinal epithelium | 1.91e-09 | 9 |
organ component layer | 3.58e-09 | 24 |
simple columnar epithelium | 7.85e-08 | 11 |
subdivision of digestive tract | 3.40e-07 | 114 |
digestive system | 4.64e-07 | 116 |
digestive tract | 4.64e-07 | 116 |
primitive gut | 4.64e-07 | 116 |
endoderm-derived structure | 6.28e-07 | 118 |
endoderm | 6.28e-07 | 118 |
presumptive endoderm | 6.28e-07 | 118 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.