FFCP PHASE1:Hg19::chr2:47596386..47596392,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=4072|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=11529|TSSclassifier=S|UniProt=P16422|association_with_transcript=99bp_to_ENST00000263735,NM_002354,uc002rvx.2_5end|coexpression_cluster_id=C4235|description=CAGE_peak_7_at_EPCAM_5end|id=chr2:47596386..47596392,+|ontology_enrichment_celltype=CL:0000066!7.79e-24!254;CL:0000223!1.40e-12!59;CL:0000039!8.11e-10!7;CL:0000586!8.11e-10!7;CL:0002076!9.04e-10!43|ontology_enrichment_celltype_v019=CL:0000039;1.08e-18;7!CL:0000586;1.08e-18;7!CL:1000507;3.67e-09;10!CL:1000494;3.67e-09;10|ontology_enrichment_celltype_v019_2=CL:0000039,4.51e-18,7;CL:0000586,4.51e-18,7;CL:0000066,3.18e-14,253;CL:0000223,1.56e-09,58;CL:1000507,3.99e-09,10;CL:1000494,3.99e-09,10|ontology_enrichment_development_v019=UBERON:0001041;6.40e-13;30!UBERON:0009497;1.42e-09;13|ontology_enrichment_disease=DOID:305!3.84e-42!106;DOID:0050687!2.38e-33!143;DOID:162!1.35e-18!235;DOID:14566!2.69e-18!239;DOID:299!1.20e-15!25;DOID:1749!4.15e-13!14;DOID:7!2.23e-08!39;DOID:3119!7.21e-08!14;DOID:0050615!5.12e-07!16|ontology_enrichment_disease_v019=DOID:299;6.12e-16;25!DOID:305;1.31e-12;106!DOID:4929;2.68e-08;2!DOID:3493;2.68e-08;2|ontology_enrichment_disease_v019_2=DOID:305,3.61e-30,106;DOID:0050687,4.46e-25,143;DOID:299,7.90e-16,25;DOID:162,8.65e-13,235;DOID:14566,2.40e-12,239;DOID:4929,2.92e-08,2;DOID:3493,4.87e-08,2;DOID:7,1.92e-07,39|ontology_enrichment_uberon=UBERON:0001007!2.46e-15!155;UBERON:0001555!2.46e-15!155;UBERON:0007026!2.46e-15!155;UBERON:0004119!1.93e-14!169;UBERON:0000925!1.93e-14!169;UBERON:0006595!1.93e-14!169;UBERON:0004921!3.11e-13!129;UBERON:0004185!3.11e-13!129;UBERON:0000466!1.42e-12!126;UBERON:0005911!2.28e-11!82;UBERON:0005409!2.77e-10!35;UBERON:0000464!3.01e-10!104;UBERON:0005177!3.72e-10!107;UBERON:0000077!3.69e-09!130;UBERON:0000160!4.81e-09!27;UBERON:0009569!2.78e-08!113;UBERON:0005156!8.02e-08!59;UBERON:0000990!8.02e-08!59;UBERON:0000344!1.84e-07!12;UBERON:0000058!2.21e-07!26;UBERON:0003929!2.35e-07!54;UBERON:0006554!3.45e-07!44;UBERON:0000473!3.68e-07!8;UBERON:0002113!3.74e-07!27;UBERON:0003918!3.74e-07!27;UBERON:0005095!3.74e-07!27;UBERON:0007687!3.74e-07!27;UBERON:0003886!3.97e-07!63;UBERON:0001008!6.55e-07!45|ontology_enrichment_uberon_v019=UBERON:0000160;2.92e-15;17!UBERON:0005409;2.70e-14;22!UBERON:0004921;6.67e-11;33!UBERON:0004211;3.67e-09;10!UBERON:0009773;3.67e-09;10!UBERON:0001231;3.67e-09;10!UBERON:0004810;3.67e-09;10!UBERON:0002394;8.11e-09;4!UBERON:0003928;8.11e-09;4!UBERON:0002294;1.51e-08;7!UBERON:0001173;1.51e-08;7!UBERON:0000059;1.74e-08;11!UBERON:0002423;4.33e-08;25!UBERON:0002108;3.91e-07;4!UBERON:0001155;5.07e-07;9|ontology_enrichment_uberon_v019_2=UBERON:0000160,1.99e-15,17;UBERON:0005409,1.50e-12,25;UBERON:0004921,4.29e-12,118;UBERON:0001007,5.77e-12,145;UBERON:0001555,5.77e-12,145;UBERON:0007026,5.77e-12,145;UBERON:0005911,2.37e-10,82;UBERON:0004119,2.95e-10,160;UBERON:0000925,2.95e-10,160;UBERON:0006595,2.95e-10,160;UBERON:0004810,3.99e-09,10;UBERON:0000059,1.03e-08,11;UBERON:0009497,4.61e-08,25;UBERON:0000015,4.61e-08,25;UBERON:0002423,4.61e-08,25;UBERON:0006235,4.61e-08,25;UBERON:0004161,4.61e-08,25;UBERON:0007499,5.68e-08,25;UBERON:0009856,1.28e-07,26;UBERON:0003929,2.69e-07,54;UBERON:0001155,3.96e-07,9;UBERON:0008835,4.17e-07,22;UBERON:0003894,4.17e-07,22;UBERON:0002108,5.33e-07,4;UBERON:0009854,9.33e-07,23|phase1_expression=0,0,0,0,0,0,0,0,0,0.491467873003018,0.697801167972428,0,0.263766978228454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.261958150995425,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,0,0.573609190778008,1.09776335516636,0.397589304964456,0.813357600086629,0.932949495138334,0.504641701751257,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.59884970106048,0,0,0,0.100528972411631,0,0,0,0,0.231860809950154,0,0,0,0,0.790204397959275,0,0,0,0,0.93733833986777,0,0.283550194484773,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.45031339509947,0,0.184161977871793,0,0,0,1.80479845162965,2.0794141018192,0.784349769176855,1.46139224653261,1.26661954671451,0,0,0,0,0,0,1.52925763827023,0.831076008928724,0.671624264166535,0,0,0.512900250232778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.330569830721956,0,0,0.2023155617111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0962221127255121,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.490080431962063,0,0,0,0,0,0,0,0.649243880549111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.8714054040822,0,0,0,0,0.71623345421307,0,0,0,0,0.111308705022906,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=4072 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11529 | |||
|TSSclassifier=S | |||
|UniProt=P16422 | |||
|association_with_transcript=99bp_to_ENST00000263735,NM_002354,uc002rvx.2_5end | |||
|coexpression_cluster_id=C4235 | |||
|description=CAGE_peak_7_at_EPCAM_5end | |||
|id=chr2:47596386..47596392,+ | |||
|ontology_enrichment_celltype=CL:0000066!7.79e-24!254;CL:0000223!1.40e-12!59;CL:0000039!8.11e-10!7;CL:0000586!8.11e-10!7;CL:0002076!9.04e-10!43 | |||
|ontology_enrichment_celltype_v019=CL:0000039;1.08e-18;7!CL:0000586;1.08e-18;7!CL:1000507;3.67e-09;10!CL:1000494;3.67e-09;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000039,4.51e-18,7;CL:0000586,4.51e-18,7;CL:0000066,3.18e-14,253;CL:0000223,1.56e-09,58;CL:1000507,3.99e-09,10;CL:1000494,3.99e-09,10 | |||
|ontology_enrichment_development_v019=UBERON:0001041;6.40e-13;30!UBERON:0009497;1.42e-09;13 | |||
|ontology_enrichment_disease=DOID:305!3.84e-42!106;DOID:0050687!2.38e-33!143;DOID:162!1.35e-18!235;DOID:14566!2.69e-18!239;DOID:299!1.20e-15!25;DOID:1749!4.15e-13!14;DOID:7!2.23e-08!39;DOID:3119!7.21e-08!14;DOID:0050615!5.12e-07!16 | |||
|ontology_enrichment_disease_v019=DOID:299;6.12e-16;25!DOID:305;1.31e-12;106!DOID:4929;2.68e-08;2!DOID:3493;2.68e-08;2 | |||
|ontology_enrichment_disease_v019_2=DOID:305,3.61e-30,106;DOID:0050687,4.46e-25,143;DOID:299,7.90e-16,25;DOID:162,8.65e-13,235;DOID:14566,2.40e-12,239;DOID:4929,2.92e-08,2;DOID:3493,4.87e-08,2;DOID:7,1.92e-07,39 | |||
|ontology_enrichment_uberon=UBERON:0001007!2.46e-15!155;UBERON:0001555!2.46e-15!155;UBERON:0007026!2.46e-15!155;UBERON:0004119!1.93e-14!169;UBERON:0000925!1.93e-14!169;UBERON:0006595!1.93e-14!169;UBERON:0004921!3.11e-13!129;UBERON:0004185!3.11e-13!129;UBERON:0000466!1.42e-12!126;UBERON:0005911!2.28e-11!82;UBERON:0005409!2.77e-10!35;UBERON:0000464!3.01e-10!104;UBERON:0005177!3.72e-10!107;UBERON:0000077!3.69e-09!130;UBERON:0000160!4.81e-09!27;UBERON:0009569!2.78e-08!113;UBERON:0005156!8.02e-08!59;UBERON:0000990!8.02e-08!59;UBERON:0000344!1.84e-07!12;UBERON:0000058!2.21e-07!26;UBERON:0003929!2.35e-07!54;UBERON:0006554!3.45e-07!44;UBERON:0000473!3.68e-07!8;UBERON:0002113!3.74e-07!27;UBERON:0003918!3.74e-07!27;UBERON:0005095!3.74e-07!27;UBERON:0007687!3.74e-07!27;UBERON:0003886!3.97e-07!63;UBERON:0001008!6.55e-07!45 | |||
|ontology_enrichment_uberon_v019=UBERON:0000160;2.92e-15;17!UBERON:0005409;2.70e-14;22!UBERON:0004921;6.67e-11;33!UBERON:0004211;3.67e-09;10!UBERON:0009773;3.67e-09;10!UBERON:0001231;3.67e-09;10!UBERON:0004810;3.67e-09;10!UBERON:0002394;8.11e-09;4!UBERON:0003928;8.11e-09;4!UBERON:0002294;1.51e-08;7!UBERON:0001173;1.51e-08;7!UBERON:0000059;1.74e-08;11!UBERON:0002423;4.33e-08;25!UBERON:0002108;3.91e-07;4!UBERON:0001155;5.07e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,1.99e-15,17;UBERON:0005409,1.50e-12,25;UBERON:0004921,4.29e-12,118;UBERON:0001007,5.77e-12,145;UBERON:0001555,5.77e-12,145;UBERON:0007026,5.77e-12,145;UBERON:0005911,2.37e-10,82;UBERON:0004119,2.95e-10,160;UBERON:0000925,2.95e-10,160;UBERON:0006595,2.95e-10,160;UBERON:0004810,3.99e-09,10;UBERON:0000059,1.03e-08,11;UBERON:0009497,4.61e-08,25;UBERON:0000015,4.61e-08,25;UBERON:0002423,4.61e-08,25;UBERON:0006235,4.61e-08,25;UBERON:0004161,4.61e-08,25;UBERON:0007499,5.68e-08,25;UBERON:0009856,1.28e-07,26;UBERON:0003929,2.69e-07,54;UBERON:0001155,3.96e-07,9;UBERON:0008835,4.17e-07,22;UBERON:0003894,4.17e-07,22;UBERON:0002108,5.33e-07,4;UBERON:0009854,9.33e-07,23 | |||
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|short_description=p7@EPCAM | |||
}} |
Revision as of 18:50, 12 September 2013
Short description: | p7@EPCAM |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_7_at_EPCAM_5end |
Coexpression cluster: | C4235_nonsmall_endometrial_colon_small_tubular_argyrophil_Prostate |
Association with transcript: | 99bp_to_ENST00000263735, NM_002354, uc002rvx.2_5end |
EntrezGene: | EPCAM |
HGNC: | 11529 |
UniProt: | P16422 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
germ line cell | 4.51e-18 | 7 |
germ cell | 4.51e-18 | 7 |
epithelial cell | 3.18e-14 | 253 |
endodermal cell | 1.56e-09 | 58 |
kidney tubule cell | 3.99e-09 | 10 |
nephron tubule epithelial cell | 3.99e-09 | 10 |
Ontology term | p-value | n |
---|---|---|
intestine | 1.99e-15 | 17 |
gastrointestinal system | 1.50e-12 | 25 |
subdivision of digestive tract | 4.29e-12 | 118 |
digestive system | 5.77e-12 | 145 |
digestive tract | 5.77e-12 | 145 |
primitive gut | 5.77e-12 | 145 |
endo-epithelium | 2.37e-10 | 82 |
endoderm-derived structure | 2.95e-10 | 160 |
endoderm | 2.95e-10 | 160 |
presumptive endoderm | 2.95e-10 | 160 |
nephron tubule epithelium | 3.99e-09 | 10 |
large intestine | 1.03e-08 | 11 |
epithelium of foregut-midgut junction | 4.61e-08 | 25 |
anatomical boundary | 4.61e-08 | 25 |
hepatobiliary system | 4.61e-08 | 25 |
foregut-midgut junction | 4.61e-08 | 25 |
septum transversum | 4.61e-08 | 25 |
epithelial sac | 5.68e-08 | 25 |
sac | 1.28e-07 | 26 |
gut epithelium | 2.69e-07 | 54 |
colon | 3.96e-07 | 9 |
hepatic diverticulum | 4.17e-07 | 22 |
liver primordium | 4.17e-07 | 22 |
small intestine | 5.33e-07 | 4 |
digestive tract diverticulum | 9.33e-07 | 23 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 3.61e-30 | 106 |
cell type cancer | 4.46e-25 | 143 |
adenocarcinoma | 7.90e-16 | 25 |
cancer | 8.65e-13 | 235 |
disease of cellular proliferation | 2.40e-12 | 239 |
tubular adenocarcinoma | 2.92e-08 | 2 |
signet ring cell adenocarcinoma | 4.87e-08 | 2 |
disease of anatomical entity | 1.92e-07 | 39 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.