FFCP PHASE1:Hg19::chr2:216289851..216289877,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=2335|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding|HGNC=3778|TSSclassifier=S|UniProt=P02751|association_with_transcript=59bp_to_AF312399_5end|coexpression_cluster_id=C79|description=CAGE_peak_42_at_FN1_5end|id=chr2:216289851..216289877,-|ontology_enrichment_celltype=CL:0000055!2.28e-31!180;CL:0000057!2.15e-24!75;CL:0002371!1.88e-14!591;CL:0000680!2.18e-13!57;CL:0000056!2.18e-13!57;CL:0000355!2.18e-13!57;CL:0000183!5.93e-13!59;CL:0000187!3.71e-12!54;CL:0000144!5.05e-12!625;CL:0002620!9.74e-10!23;CL:0000393!1.62e-09!60;CL:0000211!1.62e-09!60;CL:0000048!4.02e-09!430;CL:0000723!1.49e-08!436;CL:0002334!2.62e-08!12;CL:0000220!2.92e-08!246;CL:0000222!4.89e-08!119;CL:0000034!5.62e-08!444;CL:0002321!6.75e-08!248;CL:0000192!1.58e-07!42;CL:0000514!1.58e-07!42;CL:0000548!5.13e-07!679;CL:0000004!5.13e-07!679;CL:0000255!5.13e-07!679|ontology_enrichment_celltype_v019=CL:0000134;1.04e-12;55!CL:0000723;3.59e-12;61!CL:0000057;3.08e-11;73!CL:0000048;1.58e-10;58!CL:0002334;5.76e-10;12!CL:0002620;1.20e-09;23!CL:0002320;6.22e-09;188!CL:0000034;2.68e-08;69!CL:0000349;1.58e-07;19!CL:0000187;2.70e-07;55!CL:0000499;3.67e-07;28!CL:0002494;9.41e-07;16|ontology_enrichment_celltype_v019_2=CL:0000057,8.65e-28,76;CL:0000048,1.62e-18,427;CL:0000723,5.35e-18,433;CL:0000034,1.25e-16,441;CL:0000680,1.56e-13,58;CL:0000056,1.56e-13,58;CL:0000355,1.56e-13,58;CL:0000187,4.24e-12,55;CL:0002320,4.35e-10,361;CL:0002334,6.26e-10,12;CL:0000393,1.25e-09,61;CL:0000211,1.25e-09,61;CL:0002620,1.67e-09,23;CL:0000134,2.03e-08,354;CL:0000349,1.52e-07,19;CL:0000499,5.06e-07,28;CL:0000192,7.79e-07,43;CL:0000514,7.79e-07,43|ontology_enrichment_development_v019=CL:0000355;1.84e-07;58|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0005256!8.73e-18!143;UBERON:0000914!4.13e-17!83;UBERON:0002329!4.13e-17!83;UBERON:0003077!4.13e-17!83;UBERON:0003059!4.13e-17!83;UBERON:0007282!4.13e-17!83;UBERON:0009618!4.13e-17!83;UBERON:0007285!4.13e-17!83;UBERON:0004290!1.36e-15!70;UBERON:0000486!4.39e-14!82;UBERON:0001134!2.27e-12!61;UBERON:0002036!2.27e-12!61;UBERON:0003082!2.27e-12!61;UBERON:0002385!4.25e-12!63;UBERON:0001015!4.25e-12!63;UBERON:0000383!4.25e-12!63;UBERON:0002100!9.56e-12!216;UBERON:0003914!7.44e-11!118;UBERON:0004872!4.04e-10!84;UBERON:0000490!9.49e-10!138;UBERON:0002199!5.37e-09!45;UBERON:0002416!5.37e-09!45;UBERON:0002097!2.08e-08!40;UBERON:0002049!2.90e-08!79;UBERON:0007798!2.90e-08!79;UBERON:0003102!2.93e-08!95;UBERON:0004923!4.80e-08!57;UBERON:0000475!4.88e-08!365;UBERON:0001009!7.56e-08!113;UBERON:0004535!1.09e-07!110;UBERON:0000468!1.43e-07!659;UBERON:0001637!3.96e-07!42;UBERON:0003509!3.96e-07!42;UBERON:0004572!3.96e-07!42;UBERON:0003104!4.25e-07!238;UBERON:0009142!4.25e-07!238|ontology_enrichment_uberon_v019=UBERON:0002384;1.06e-08;198|ontology_enrichment_uberon_v019_2=UBERON:0007524,2.67e-16,73;UBERON:0002329,2.95e-16,71;UBERON:0003059,2.95e-16,71;UBERON:0007282,2.95e-16,71;UBERON:0004290,2.95e-16,71;UBERON:0009618,2.95e-16,71;UBERON:0003077,8.92e-16,72;UBERON:0007285,8.92e-16,72;UBERON:0007503,4.41e-15,78;UBERON:0000486,3.23e-14,83;UBERON:0005256,6.71e-13,122;UBERON:0001134,1.82e-12,62;UBERON:0002036,1.82e-12,62;UBERON:0003082,1.82e-12,62;UBERON:0002385,2.46e-12,64;UBERON:0001015,2.46e-12,64;UBERON:0000383,2.46e-12,64;UBERON:0003104,1.51e-11,160;UBERON:0009142,1.51e-11,160;UBERON:0002384,1.49e-10,371;UBERON:0002199,9.20e-09,46;UBERON:0002416,9.20e-09,46;UBERON:0000926,1.41e-08,315;UBERON:0004120,1.41e-08,315;UBERON:0006603,1.41e-08,315;UBERON:0002097,2.52e-08,41;UBERON:0000490,3.39e-08,148;UBERON:0004923,1.62e-07,66;UBERON:0004872,1.72e-07,83;UBERON:0002100,1.95e-07,199|phase1_expression=5.63202975738726,10.7050261945492,6.90676580070259,9.00659685178174,4.02264984984559,12.2127393374052,0,3.15859936713415,0.522371256399677,0.245733936501509,0.697801167972428,3.71350332621293,6.06664049925443,1.36142988256051,3.97676850873499,6.05092631806598,1.80808358407193,1.46062018077475,5.85519358548608,0.984968464614303,1.02000345622126,0.626909442956176,0,0.547497700291537,1.12988375635323,0,0,0,0,0,0.464448369948228,0,0.30120591877825,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,131.655707809539,6.03630773733273,2.42938867502708,3.2529523714611,1.00267582127178,2.60723734129483,31.0161519349929,95.3804345793166,0.189069634328136,2.21729397462564,1.66886092816939,0.130979075497713,0,0,0,0,0,0,0,0,0.198762407366705,0,0.694281003215189,0.56530794192401,1.67799774483962,1.10047216776027,0.835979866147242,0.775250277507987,0,1.00416183829401,0,0,0,0,4.86085168729056,0.446498641420399,0.673588117878509,0.225222960966644,0,0,0.183201743930407,0,0,0,23.8546536813753,4.43206790826029,15.8891016975863,19.2180535901705,3.54668382198357,3.36406560085384,3.20246987189115,7.15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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=2335 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=3778 | |||
|TSSclassifier=S | |||
|UniProt=P02751 | |||
|association_with_transcript=59bp_to_AF312399_5end | |||
|coexpression_cluster_id=C79 | |||
|description=CAGE_peak_42_at_FN1_5end | |||
|id=chr2:216289851..216289877,- | |||
|ontology_enrichment_celltype=CL:0000055!2.28e-31!180;CL:0000057!2.15e-24!75;CL:0002371!1.88e-14!591;CL:0000680!2.18e-13!57;CL:0000056!2.18e-13!57;CL:0000355!2.18e-13!57;CL:0000183!5.93e-13!59;CL:0000187!3.71e-12!54;CL:0000144!5.05e-12!625;CL:0002620!9.74e-10!23;CL:0000393!1.62e-09!60;CL:0000211!1.62e-09!60;CL:0000048!4.02e-09!430;CL:0000723!1.49e-08!436;CL:0002334!2.62e-08!12;CL:0000220!2.92e-08!246;CL:0000222!4.89e-08!119;CL:0000034!5.62e-08!444;CL:0002321!6.75e-08!248;CL:0000192!1.58e-07!42;CL:0000514!1.58e-07!42;CL:0000548!5.13e-07!679;CL:0000004!5.13e-07!679;CL:0000255!5.13e-07!679 | |||
|ontology_enrichment_celltype_v019=CL:0000134;1.04e-12;55!CL:0000723;3.59e-12;61!CL:0000057;3.08e-11;73!CL:0000048;1.58e-10;58!CL:0002334;5.76e-10;12!CL:0002620;1.20e-09;23!CL:0002320;6.22e-09;188!CL:0000034;2.68e-08;69!CL:0000349;1.58e-07;19!CL:0000187;2.70e-07;55!CL:0000499;3.67e-07;28!CL:0002494;9.41e-07;16 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,8.65e-28,76;CL:0000048,1.62e-18,427;CL:0000723,5.35e-18,433;CL:0000034,1.25e-16,441;CL:0000680,1.56e-13,58;CL:0000056,1.56e-13,58;CL:0000355,1.56e-13,58;CL:0000187,4.24e-12,55;CL:0002320,4.35e-10,361;CL:0002334,6.26e-10,12;CL:0000393,1.25e-09,61;CL:0000211,1.25e-09,61;CL:0002620,1.67e-09,23;CL:0000134,2.03e-08,354;CL:0000349,1.52e-07,19;CL:0000499,5.06e-07,28;CL:0000192,7.79e-07,43;CL:0000514,7.79e-07,43 | |||
|ontology_enrichment_development_v019=CL:0000355;1.84e-07;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005256!8.73e-18!143;UBERON:0000914!4.13e-17!83;UBERON:0002329!4.13e-17!83;UBERON:0003077!4.13e-17!83;UBERON:0003059!4.13e-17!83;UBERON:0007282!4.13e-17!83;UBERON:0009618!4.13e-17!83;UBERON:0007285!4.13e-17!83;UBERON:0004290!1.36e-15!70;UBERON:0000486!4.39e-14!82;UBERON:0001134!2.27e-12!61;UBERON:0002036!2.27e-12!61;UBERON:0003082!2.27e-12!61;UBERON:0002385!4.25e-12!63;UBERON:0001015!4.25e-12!63;UBERON:0000383!4.25e-12!63;UBERON:0002100!9.56e-12!216;UBERON:0003914!7.44e-11!118;UBERON:0004872!4.04e-10!84;UBERON:0000490!9.49e-10!138;UBERON:0002199!5.37e-09!45;UBERON:0002416!5.37e-09!45;UBERON:0002097!2.08e-08!40;UBERON:0002049!2.90e-08!79;UBERON:0007798!2.90e-08!79;UBERON:0003102!2.93e-08!95;UBERON:0004923!4.80e-08!57;UBERON:0000475!4.88e-08!365;UBERON:0001009!7.56e-08!113;UBERON:0004535!1.09e-07!110;UBERON:0000468!1.43e-07!659;UBERON:0001637!3.96e-07!42;UBERON:0003509!3.96e-07!42;UBERON:0004572!3.96e-07!42;UBERON:0003104!4.25e-07!238;UBERON:0009142!4.25e-07!238 | |||
|ontology_enrichment_uberon_v019=UBERON:0002384;1.06e-08;198 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007524,2.67e-16,73;UBERON:0002329,2.95e-16,71;UBERON:0003059,2.95e-16,71;UBERON:0007282,2.95e-16,71;UBERON:0004290,2.95e-16,71;UBERON:0009618,2.95e-16,71;UBERON:0003077,8.92e-16,72;UBERON:0007285,8.92e-16,72;UBERON:0007503,4.41e-15,78;UBERON:0000486,3.23e-14,83;UBERON:0005256,6.71e-13,122;UBERON:0001134,1.82e-12,62;UBERON:0002036,1.82e-12,62;UBERON:0003082,1.82e-12,62;UBERON:0002385,2.46e-12,64;UBERON:0001015,2.46e-12,64;UBERON:0000383,2.46e-12,64;UBERON:0003104,1.51e-11,160;UBERON:0009142,1.51e-11,160;UBERON:0002384,1.49e-10,371;UBERON:0002199,9.20e-09,46;UBERON:0002416,9.20e-09,46;UBERON:0000926,1.41e-08,315;UBERON:0004120,1.41e-08,315;UBERON:0006603,1.41e-08,315;UBERON:0002097,2.52e-08,41;UBERON:0000490,3.39e-08,148;UBERON:0004923,1.62e-07,66;UBERON:0004872,1.72e-07,83;UBERON:0002100,1.95e-07,199 | |||
|phase1_expression=5.63202975738726,10.7050261945492,6.90676580070259,9.00659685178174,4.02264984984559,12.2127393374052,0,3.15859936713415,0.522371256399677,0.245733936501509,0.697801167972428,3.71350332621293,6.06664049925443,1.36142988256051,3.97676850873499,6.05092631806598,1.80808358407193,1.46062018077475,5.85519358548608,0.984968464614303,1.02000345622126,0.626909442956176,0,0.547497700291537,1.12988375635323,0,0,0,0,0,0.464448369948228,0,0.30120591877825,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,131.655707809539,6.03630773733273,2.42938867502708,3.2529523714611,1.00267582127178,2.60723734129483,31.0161519349929,95.3804345793166,0.189069634328136,2.21729397462564,1.66886092816939,0.130979075497713,0,0,0,0,0,0,0,0,0.198762407366705,0,0.694281003215189,0.56530794192401,1.67799774483962,1.10047216776027,0.835979866147242,0.775250277507987,0,1.00416183829401,0,0,0,0,4.86085168729056,0.446498641420399,0.673588117878509,0.225222960966644,0,0,0.183201743930407,0,0,0,23.8546536813753,4.43206790826029,15.8891016975863,19.2180535901705,3.54668382198357,3.36406560085384,3.20246987189115,7.15335890409764,12.7596524513904,8.35206166832066,6.37501422142489,14.0762407709786,19.01380550784,1.17160715916898,6.55536161343673,1.71141546463335,7.02408798593465,2.23125547423153,2.10434827678571,2.24721290723598,1.83738754129404,1.59684612505298,2.16984140469107,0,4.69807165629258,10.9219363432563,2.87447256726495,1.34668891163253,2.50237039743928,1.6623846929051,0.877955241761676,6.43624371177941,4.05642759047811,1.70148274740032,7.5343646989322,3.20336083227851,7.41761654058466,9.90300617078528,3.29768093563004,9.01741890159702,0.930584281657949,14.1772119082664,4.18979122193154,10.8546522924969,5.24684422261106,2.90962902273861,8.16522062788213,2.01504196455281,1.3564847384839,0.773043412653187,1.90922284413584,0.286804595389004,0,0,0.348581828608555,0.414644220061482,0.504641701751257,0.36497735907583,6.25798129319264,6.43240938192885,2.76269842704961,9.28735856063958,11.5500717067134,0,0,0,0,0,0,0,0,0,0.738155454624648,0,3.2925920906512,8.82052268313252,1.26755034821831,0.982827216677626,1.18157981336281,0,0.983907508344908,0.343135620597051,3.84125998930189,0,0,0,0.325808305310325,0,0,0.231860809950154,8.21860859650752,0.577465791044295,1.85194205030644,1.14152491340759,0,0,0,0,0.148631162288728,0,1.17587489739202,0.141775097242386,4.74660170325096,1.16253575405585,2.30029607499127,0,0,0,0,0,0,0,0,0,1.13110241973656,0,0,1.12131084345361,3.92364061949952,0.8800594298514,2.84397774667111,7.15312891703765,7.607724773004,0.531876233169741,1.04007436911366,3.60090323966999,8.5109479213967,4.26275486425759,1.85871391755592,1.62786481617433,5.76268235746538,1.95441710576241,0.355391948742546,0.791951872933429,0.904318131178758,0,0,0,0,6.32501818449095,5.27174682081482,10.3375742250703,1.42636905040718,3.76431397335706,10.8902450951703,2.68591444859843,0,0,0,0,0,1.30139853857622,0,0.167516265334349,0,0,0,0,1.2269149171914,7.50255781589516,6.23909554509392,27.0362119990049,32.8309339386778,12.7738956177487,14.9941011190673,4.21324539618807,6.82222512167955,3.10419213877515,3.98535359121262,5.8998133933345,2.60650843404249,3.52442083432933,5.49029478097369,0,0,0,0.606255142892519,11.6504807657348,3.32629322662648,16.3751153160393,18.4154367945675,19.6462066103152,9.35415789566617,13.816095724801,8.68611174175481,8.90508398669946,6.01417805830357,3.9063579568888,4.43486642474569,2.07701771673448,4.53220475993841,0.483437798366489,5.61418116849198,0,0.68888668898764,3.09554985611419,1.57349297951309,0.902399225814824,0.462092022626489,0,1.46139224653261,0.949964660035881,0,0.510281115829547,2.15915916102139,1.54227252690289,0.270946437543853,1.00337954770971,0.254876273045038,0,1.11937377361089,0,0,0,0.328014645699706,0.325378394664303,1.54561517471583,0.27470839445503,0,1.72279661398852,0.650060246036521,4.82051789532479,2.61010939388729,4.62145851343933,6.60065801322357,3.30807773962873,6.98231591643779,10.4412019618245,5.02837101754995,3.38321735457602,2.64455864577565,5.76570202095319,3.31793052485919,3.94515345336645,1.39453664789186,25.1849877464512,0.6970372701606,2.46426864140871,0,0,2.40921484835096,0.715624433709956,2.60510858551767,6.01120906965579,3.62197368455267,0.511795582622668,6.41908482050881,2.86382923133343,1.56989728039846,1.79872457583315,2.19629623788844,0.942499218765491,0.808729926293264,0,0.421258456238981,0,1.21856744815642,1.05650146756755,1.22849920267187,1.55545975149084,6.78048699721457,1.10273068709225,2.65375590096488,1.31535265576129,4.6302042741335,3.9353685122798,2.84074527747786,1.54911749049875,1.12678241012897,1.86434757865267,1.47373561519682,2.85336841185,0.354761064070598,4.43326034125095,6.91519275215794,0.75894634753143,0,0.288666338176536,2.01090682660736,0,0.847294206991012,0,0,0,1.1486170010348,0,0,0,0,0,0,0,0,0,0,0,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| |||
|short_description=p42@FN1 | |||
}} |
Revision as of 16:39, 12 September 2013
Short description: | p42@FN1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_42_at_FN1_5end |
Coexpression cluster: | C79_chorionic_Chondrocyte_Cardiac_Smooth_Fibroblast_Preadipocyte_Mesenchymal |
Association with transcript: | 59bp_to_AF312399_5end |
EntrezGene: | FN1 |
HGNC: | 3778 |
UniProt: | P02751 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 8.65e-28 | 76 |
multi fate stem cell | 1.62e-18 | 427 |
somatic stem cell | 5.35e-18 | 433 |
stem cell | 1.25e-16 | 441 |
muscle precursor cell | 1.56e-13 | 58 |
myoblast | 1.56e-13 | 58 |
multi-potent skeletal muscle stem cell | 1.56e-13 | 58 |
muscle cell | 4.24e-12 | 55 |
connective tissue cell | 4.35e-10 | 361 |
preadipocyte | 6.26e-10 | 12 |
electrically responsive cell | 1.25e-09 | 61 |
electrically active cell | 1.25e-09 | 61 |
skin fibroblast | 1.67e-09 | 23 |
mesenchymal cell | 2.03e-08 | 354 |
extraembryonic cell | 1.52e-07 | 19 |
stromal cell | 5.06e-07 | 28 |
smooth muscle cell | 7.79e-07 | 43 |
smooth muscle myoblast | 7.79e-07 | 43 |
Ontology term | p-value | n |
---|---|---|
dense mesenchyme tissue | 2.67e-16 | 73 |
somite | 2.95e-16 | 71 |
presomitic mesoderm | 2.95e-16 | 71 |
presumptive segmental plate | 2.95e-16 | 71 |
dermomyotome | 2.95e-16 | 71 |
trunk paraxial mesoderm | 2.95e-16 | 71 |
paraxial mesoderm | 8.92e-16 | 72 |
presumptive paraxial mesoderm | 8.92e-16 | 72 |
epithelial vesicle | 4.41e-15 | 78 |
multilaminar epithelium | 3.23e-14 | 83 |
trunk mesenchyme | 6.71e-13 | 122 |
skeletal muscle tissue | 1.82e-12 | 62 |
striated muscle tissue | 1.82e-12 | 62 |
myotome | 1.82e-12 | 62 |
muscle tissue | 2.46e-12 | 64 |
musculature | 2.46e-12 | 64 |
musculature of body | 2.46e-12 | 64 |
mesenchyme | 1.51e-11 | 160 |
entire embryonic mesenchyme | 1.51e-11 | 160 |
connective tissue | 1.49e-10 | 371 |
integument | 9.20e-09 | 46 |
integumental system | 9.20e-09 | 46 |
mesoderm | 1.41e-08 | 315 |
mesoderm-derived structure | 1.41e-08 | 315 |
presumptive mesoderm | 1.41e-08 | 315 |
skin of body | 2.52e-08 | 41 |
unilaminar epithelium | 3.39e-08 | 148 |
organ component layer | 1.62e-07 | 66 |
splanchnic layer of lateral plate mesoderm | 1.72e-07 | 83 |
trunk | 1.95e-07 | 199 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.