FFCP PHASE1:Hg19::chr2:216248805..216248814,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=2335|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=3778|TSSclassifier=S|UniProt=|association_with_transcript=-2bp_to_ENST00000480737_5end|coexpression_cluster_id=C79|description=CAGE_peak_40_at_FN1_5end|id=chr2:216248805..216248814,-|ontology_enrichment_celltype=CL:0000055!2.31e-29!180;CL:0000057!1.39e-24!75;CL:0002371!3.95e-18!591;CL:0000144!7.54e-17!625;CL:0000548!1.28e-11!679;CL:0000004!1.28e-11!679;CL:0000255!1.28e-11!679;CL:0002620!3.35e-11!23;CL:0000012!4.29e-11!682;CL:0000680!4.70e-11!57;CL:0000056!4.70e-11!57;CL:0000355!4.70e-11!57;CL:0000183!1.30e-10!59;CL:0000222!5.03e-10!119;CL:0000187!8.82e-10!54;CL:0000048!1.03e-09!430;CL:0000723!2.65e-09!436;CL:0000220!1.01e-08!246;CL:0002334!2.16e-08!12;CL:0002321!2.34e-08!248;CL:0000034!2.61e-08!444;CL:0000393!1.00e-07!60;CL:0000211!1.00e-07!60|ontology_enrichment_celltype_v019=CL:0000134;5.12e-15;55!CL:0000723;2.77e-13;61!CL:0000048;1.31e-12;58!CL:0002620;1.90e-10;23!CL:0002334;4.60e-10;12!CL:0000349;6.70e-10;19!CL:0000034;6.87e-10;69!CL:0002320;2.56e-09;188!CL:0000057;3.57e-09;73!CL:0000499;1.38e-08;28!CL:0002570;9.95e-07;8|ontology_enrichment_celltype_v019_2=CL:0000057,1.28e-25,76;CL:0000048,9.60e-20,427;CL:0000723,3.55e-19,433;CL:0000034,8.26e-18,441;CL:0002320,9.63e-14,361;CL:0000134,9.63e-12,354;CL:0002620,1.85e-10,23;CL:0002334,3.59e-10,12;CL:0000680,5.76e-10,58;CL:0000056,5.76e-10,58;CL:0000355,5.76e-10,58;CL:0000349,7.67e-10,19;CL:0000219,2.56e-09,386;CL:0000499,1.42e-08,28;CL:0000187,1.48e-08,55;CL:0002570,8.08e-07,8;CL:0000393,9.87e-07,61;CL:0000211,9.87e-07,61|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:2394;5.80e-08;14|ontology_enrichment_disease_v019_2=DOID:2394,8.41e-08,14|ontology_enrichment_uberon=UBERON:0005256!7.31e-13!143;UBERON:0000914!8.34e-13!83;UBERON:0002329!8.34e-13!83;UBERON:0003077!8.34e-13!83;UBERON:0003059!8.34e-13!83;UBERON:0007282!8.34e-13!83;UBERON:0009618!8.34e-13!83;UBERON:0007285!8.34e-13!83;UBERON:0004290!1.54e-11!70;UBERON:0000486!2.40e-11!82;UBERON:0003914!2.90e-10!118;UBERON:0001134!1.00e-09!61;UBERON:0002036!1.00e-09!61;UBERON:0003082!1.00e-09!61;UBERON:0004872!1.10e-09!84;UBERON:0002385!2.86e-09!63;UBERON:0001015!2.86e-09!63;UBERON:0000383!2.86e-09!63;UBERON:0002199!4.79e-09!45;UBERON:0002416!4.79e-09!45;UBERON:0003102!6.20e-09!95;UBERON:0000490!6.96e-09!138;UBERON:0002049!7.18e-09!79;UBERON:0007798!7.18e-09!79;UBERON:0002100!2.66e-08!216;UBERON:0004535!4.54e-08!110;UBERON:0004923!4.87e-08!57;UBERON:0001009!1.20e-07!113;UBERON:0002097!1.61e-07!40|ontology_enrichment_uberon_v019=UBERON:0002384;3.04e-09;198!UBERON:0005631;1.01e-07;10!UBERON:0000158;1.01e-07;10!UBERON:0001013;1.56e-07;14!UBERON:0000478;1.59e-07;24|ontology_enrichment_uberon_v019_2=UBERON:0002384,2.38e-14,371;UBERON:0007524,5.50e-10,73;UBERON:0002329,7.20e-10,71;UBERON:0003059,7.20e-10,71;UBERON:0007282,7.20e-10,71;UBERON:0004290,7.20e-10,71;UBERON:0009618,7.20e-10,71;UBERON:0007503,8.89e-10,78;UBERON:0003077,1.51e-09,72;UBERON:0007285,1.51e-09,72;UBERON:0002199,1.62e-09,46;UBERON:0002416,1.62e-09,46;UBERON:0000486,2.57e-09,83;UBERON:0005256,4.98e-09,122;UBERON:0001134,1.41e-08,62;UBERON:0002036,1.41e-08,62;UBERON:0003082,1.41e-08,62;UBERON:0005631,3.54e-08,14;UBERON:0000158,3.54e-08,14;UBERON:0002097,4.67e-08,41;UBERON:0003104,5.56e-08,160;UBERON:0009142,5.56e-08,160;UBERON:0002385,5.79e-08,64;UBERON:0001015,5.79e-08,64;UBERON:0000383,5.79e-08,64;UBERON:0004923,7.92e-08,66;UBERON:0001013,1.47e-07,14;UBERON:0000478,1.76e-07,24;UBERON:0003102,2.39e-07,99;UBERON:0000926,3.19e-07,315;UBERON:0004120,3.19e-07,315;UBERON:0006603,3.19e-07,315;UBERON:0000490,4.11e-07,148|phase1_expression=10.3556676184217,28.2612691536098,8.45726424575827,12.0087958023756,7.59833860526389,14.8297549097063,5.06599756336621,3.15859936713415,0.261185628199839,0.491467873003018,0.697801167972428,4.80571018686379,4.22027165165526,1.48519623552056,3.31397375727916,1.34465029290355,1.80808358407193,5.84248072309899,1.46379839637152,0.61560529038394,1.42800483870977,0.313454721478088,0,0.410623275218653,0.627713197974014,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,26.8187552945358,8.71911117614727,2.9408389224012,3.61439152384566,5.0133791063589,3.18662341713812,55.6700162935769,95.3804345793166,0.189069634328136,2.66075276955077,1.14185221401064,0.130979075497713,0,0,0,0,0,0,0,0,0,0.860234595106124,0.694281003215189,1.13061588384802,0.838998872419812,2.75118041940067,0.835979866147242,0.516833518338658,0.35576626268671,1.00416183829401,0.402829317109147,0.760272105718513,0.732186172644509,0.367663080345869,3.24056779152704,0.0892997282840798,0.22452937262617,0,1.53316637465883,0,0.366403487860815,0,0,0.436094052142534,25.3455695364612,7.59783069987479,16.153920059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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=2335 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3778 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-2bp_to_ENST00000480737_5end | |||
|coexpression_cluster_id=C79 | |||
|description=CAGE_peak_40_at_FN1_5end | |||
|id=chr2:216248805..216248814,- | |||
|ontology_enrichment_celltype=CL:0000055!2.31e-29!180;CL:0000057!1.39e-24!75;CL:0002371!3.95e-18!591;CL:0000144!7.54e-17!625;CL:0000548!1.28e-11!679;CL:0000004!1.28e-11!679;CL:0000255!1.28e-11!679;CL:0002620!3.35e-11!23;CL:0000012!4.29e-11!682;CL:0000680!4.70e-11!57;CL:0000056!4.70e-11!57;CL:0000355!4.70e-11!57;CL:0000183!1.30e-10!59;CL:0000222!5.03e-10!119;CL:0000187!8.82e-10!54;CL:0000048!1.03e-09!430;CL:0000723!2.65e-09!436;CL:0000220!1.01e-08!246;CL:0002334!2.16e-08!12;CL:0002321!2.34e-08!248;CL:0000034!2.61e-08!444;CL:0000393!1.00e-07!60;CL:0000211!1.00e-07!60 | |||
|ontology_enrichment_celltype_v019=CL:0000134;5.12e-15;55!CL:0000723;2.77e-13;61!CL:0000048;1.31e-12;58!CL:0002620;1.90e-10;23!CL:0002334;4.60e-10;12!CL:0000349;6.70e-10;19!CL:0000034;6.87e-10;69!CL:0002320;2.56e-09;188!CL:0000057;3.57e-09;73!CL:0000499;1.38e-08;28!CL:0002570;9.95e-07;8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.28e-25,76;CL:0000048,9.60e-20,427;CL:0000723,3.55e-19,433;CL:0000034,8.26e-18,441;CL:0002320,9.63e-14,361;CL:0000134,9.63e-12,354;CL:0002620,1.85e-10,23;CL:0002334,3.59e-10,12;CL:0000680,5.76e-10,58;CL:0000056,5.76e-10,58;CL:0000355,5.76e-10,58;CL:0000349,7.67e-10,19;CL:0000219,2.56e-09,386;CL:0000499,1.42e-08,28;CL:0000187,1.48e-08,55;CL:0002570,8.08e-07,8;CL:0000393,9.87e-07,61;CL:0000211,9.87e-07,61 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:2394;5.80e-08;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,8.41e-08,14 | |||
|ontology_enrichment_uberon=UBERON:0005256!7.31e-13!143;UBERON:0000914!8.34e-13!83;UBERON:0002329!8.34e-13!83;UBERON:0003077!8.34e-13!83;UBERON:0003059!8.34e-13!83;UBERON:0007282!8.34e-13!83;UBERON:0009618!8.34e-13!83;UBERON:0007285!8.34e-13!83;UBERON:0004290!1.54e-11!70;UBERON:0000486!2.40e-11!82;UBERON:0003914!2.90e-10!118;UBERON:0001134!1.00e-09!61;UBERON:0002036!1.00e-09!61;UBERON:0003082!1.00e-09!61;UBERON:0004872!1.10e-09!84;UBERON:0002385!2.86e-09!63;UBERON:0001015!2.86e-09!63;UBERON:0000383!2.86e-09!63;UBERON:0002199!4.79e-09!45;UBERON:0002416!4.79e-09!45;UBERON:0003102!6.20e-09!95;UBERON:0000490!6.96e-09!138;UBERON:0002049!7.18e-09!79;UBERON:0007798!7.18e-09!79;UBERON:0002100!2.66e-08!216;UBERON:0004535!4.54e-08!110;UBERON:0004923!4.87e-08!57;UBERON:0001009!1.20e-07!113;UBERON:0002097!1.61e-07!40 | |||
|ontology_enrichment_uberon_v019=UBERON:0002384;3.04e-09;198!UBERON:0005631;1.01e-07;10!UBERON:0000158;1.01e-07;10!UBERON:0001013;1.56e-07;14!UBERON:0000478;1.59e-07;24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002384,2.38e-14,371;UBERON:0007524,5.50e-10,73;UBERON:0002329,7.20e-10,71;UBERON:0003059,7.20e-10,71;UBERON:0007282,7.20e-10,71;UBERON:0004290,7.20e-10,71;UBERON:0009618,7.20e-10,71;UBERON:0007503,8.89e-10,78;UBERON:0003077,1.51e-09,72;UBERON:0007285,1.51e-09,72;UBERON:0002199,1.62e-09,46;UBERON:0002416,1.62e-09,46;UBERON:0000486,2.57e-09,83;UBERON:0005256,4.98e-09,122;UBERON:0001134,1.41e-08,62;UBERON:0002036,1.41e-08,62;UBERON:0003082,1.41e-08,62;UBERON:0005631,3.54e-08,14;UBERON:0000158,3.54e-08,14;UBERON:0002097,4.67e-08,41;UBERON:0003104,5.56e-08,160;UBERON:0009142,5.56e-08,160;UBERON:0002385,5.79e-08,64;UBERON:0001015,5.79e-08,64;UBERON:0000383,5.79e-08,64;UBERON:0004923,7.92e-08,66;UBERON:0001013,1.47e-07,14;UBERON:0000478,1.76e-07,24;UBERON:0003102,2.39e-07,99;UBERON:0000926,3.19e-07,315;UBERON:0004120,3.19e-07,315;UBERON:0006603,3.19e-07,315;UBERON:0000490,4.11e-07,148 | |||
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| |||
|short_description=p40@FN1 | |||
}} |
Revision as of 16:34, 12 September 2013
Short description: | p40@FN1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_40_at_FN1_5end |
Coexpression cluster: | C79_chorionic_Chondrocyte_Cardiac_Smooth_Fibroblast_Preadipocyte_Mesenchymal |
Association with transcript: | -2bp_to_ENST00000480737_5end |
EntrezGene: | FN1 |
HGNC: | 3778 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.28e-25 | 76 |
multi fate stem cell | 9.60e-20 | 427 |
somatic stem cell | 3.55e-19 | 433 |
stem cell | 8.26e-18 | 441 |
connective tissue cell | 9.63e-14 | 361 |
mesenchymal cell | 9.63e-12 | 354 |
skin fibroblast | 1.85e-10 | 23 |
preadipocyte | 3.59e-10 | 12 |
muscle precursor cell | 5.76e-10 | 58 |
myoblast | 5.76e-10 | 58 |
multi-potent skeletal muscle stem cell | 5.76e-10 | 58 |
extraembryonic cell | 7.67e-10 | 19 |
motile cell | 2.56e-09 | 386 |
stromal cell | 1.42e-08 | 28 |
muscle cell | 1.48e-08 | 55 |
mesenchymal stem cell of adipose | 8.08e-07 | 8 |
electrically responsive cell | 9.87e-07 | 61 |
electrically active cell | 9.87e-07 | 61 |
Ontology term | p-value | n |
---|---|---|
connective tissue | 2.38e-14 | 371 |
dense mesenchyme tissue | 5.50e-10 | 73 |
somite | 7.20e-10 | 71 |
presomitic mesoderm | 7.20e-10 | 71 |
presumptive segmental plate | 7.20e-10 | 71 |
dermomyotome | 7.20e-10 | 71 |
trunk paraxial mesoderm | 7.20e-10 | 71 |
epithelial vesicle | 8.89e-10 | 78 |
paraxial mesoderm | 1.51e-09 | 72 |
presumptive paraxial mesoderm | 1.51e-09 | 72 |
integument | 1.62e-09 | 46 |
integumental system | 1.62e-09 | 46 |
multilaminar epithelium | 2.57e-09 | 83 |
trunk mesenchyme | 4.98e-09 | 122 |
skeletal muscle tissue | 1.41e-08 | 62 |
striated muscle tissue | 1.41e-08 | 62 |
myotome | 1.41e-08 | 62 |
extraembryonic membrane | 3.54e-08 | 14 |
membranous layer | 3.54e-08 | 14 |
skin of body | 4.67e-08 | 41 |
mesenchyme | 5.56e-08 | 160 |
entire embryonic mesenchyme | 5.56e-08 | 160 |
muscle tissue | 5.79e-08 | 64 |
musculature | 5.79e-08 | 64 |
musculature of body | 5.79e-08 | 64 |
organ component layer | 7.92e-08 | 66 |
adipose tissue | 1.47e-07 | 14 |
extraembryonic structure | 1.76e-07 | 24 |
surface structure | 2.39e-07 | 99 |
mesoderm | 3.19e-07 | 315 |
mesoderm-derived structure | 3.19e-07 | 315 |
presumptive mesoderm | 3.19e-07 | 315 |
unilaminar epithelium | 4.11e-07 | 148 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 8.41e-08 | 14 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.