FFCP PHASE1:Hg19::chr2:21231979..21231997,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=338|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=603|TSSclassifier=N|UniProt=Q13789|association_with_transcript=-463bp_to_X03324_5end|coexpression_cluster_id=C5|description=CAGE_peak_7_at_APOB_5end|id=chr2:21231979..21231997,-|ontology_enrichment_celltype=CL:0000181!2.71e-48!12;CL:0000417!2.71e-48!12;CL:0000668!2.71e-48!12;CL:0000414!2.71e-48!12;CL:0000412!2.71e-48!12;CL:0000182!2.71e-48!12;CL:0000223!5.05e-17!59;CL:0002563!7.83e-10!4|ontology_enrichment_celltype_v019=CL:0000182;7.78e-51;12|ontology_enrichment_celltype_v019_2=CL:0000182,8.38e-51,12;CL:0000223,4.52e-13,58|ontology_enrichment_development_v019=UBERON:0004161;2.08e-40;11!UBERON:0009497;3.57e-34;13!UBERON:0001041;1.11e-14;30!UBERON:0003104;3.00e-14;31!CL:0000223;3.92e-09;58|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002107!4.91e-47!19;UBERON:0006925!4.91e-47!19;UBERON:0008836!4.91e-47!19;UBERON:0008835!1.95e-40!22;UBERON:0003894!1.95e-40!22;UBERON:0009854!1.28e-38!23;UBERON:0007499!2.03e-35!25;UBERON:0009497!2.03e-35!25;UBERON:0000015!2.03e-35!25;UBERON:0002423!2.03e-35!25;UBERON:0006235!2.03e-35!25;UBERON:0004161!2.03e-35!25;UBERON:0005057!5.29e-34!26;UBERON:0009856!5.29e-34!26;UBERON:0002365!2.73e-28!31;UBERON:0002330!2.73e-28!31;UBERON:0003929!1.81e-26!54;UBERON:0002368!6.81e-25!35;UBERON:0000949!4.89e-19!45;UBERON:0004921!1.51e-17!129;UBERON:0004185!1.51e-17!129;UBERON:0002530!3.82e-17!59;UBERON:0005911!1.03e-16!82;UBERON:0005172!2.64e-15!55;UBERON:0005173!2.64e-15!55;UBERON:0001007!3.70e-14!155;UBERON:0001555!3.70e-14!155;UBERON:0007026!3.70e-14!155;UBERON:0002417!1.19e-13!61;UBERON:0000916!1.19e-13!61;UBERON:0004119!9.25e-13!169;UBERON:0000925!9.25e-13!169;UBERON:0006595!9.25e-13!169;UBERON:0000160!3.56e-11!27;UBERON:0007029!3.61e-10!1;UBERON:0001242!7.83e-10!4;UBERON:0001262!7.83e-10!4;UBERON:0004786!7.83e-10!4;UBERON:0004808!7.83e-10!4;UBERON:0001277!7.83e-10!4;UBERON:0000490!4.70e-09!138;UBERON:0005409!1.36e-08!35;UBERON:0000077!3.35e-08!130;UBERON:0003350!4.86e-08!5;UBERON:0001041!6.37e-08!98;UBERON:0005177!3.97e-07!107|ontology_enrichment_uberon_v019=UBERON:0002107;2.12e-52;19!UBERON:0006925;2.12e-52;19!UBERON:0002423;1.23e-39;25!UBERON:0002365;7.79e-31;31!UBERON:0002330;7.79e-31;31!UBERON:0002368;4.79e-27;33!UBERON:0002108;6.83e-23;4!UBERON:0000949;2.19e-19;43!UBERON:0000160;5.29e-17;17!UBERON:0001007;1.55e-14;81!UBERON:0005409;2.62e-13;22!UBERON:0005172;7.70e-12;52!UBERON:0005173;7.70e-12;52!UBERON:0002417;5.32e-11;58!UBERON:0000916;5.32e-11;58!UBERON:0002530;1.08e-09;57!UBERON:0004921;6.77e-08;33|ontology_enrichment_uberon_v019_2=UBERON:0002107,2.12e-52,19;UBERON:0006925,2.12e-52,19;UBERON:0008836,2.12e-52,19;UBERON:0008835,3.78e-45,22;UBERON:0003894,3.78e-45,22;UBERON:0009854,3.76e-43,23;UBERON:0007499,1.24e-39,25;UBERON:0009497,1.24e-39,25;UBERON:0000015,1.24e-39,25;UBERON:0002423,1.24e-39,25;UBERON:0006235,1.24e-39,25;UBERON:0004161,1.24e-39,25;UBERON:0009856,4.44e-38,26;UBERON:0002365,8.41e-32,31;UBERON:0002330,8.41e-32,31;UBERON:0002368,4.56e-28,35;UBERON:0002108,7.94e-23,4;UBERON:0003929,5.29e-22,54;UBERON:0000949,1.25e-21,45;UBERON:0004921,7.61e-19,118;UBERON:0005172,7.25e-18,54;UBERON:0005173,7.25e-18,54;UBERON:0000160,5.67e-17,17;UBERON:0002530,2.86e-16,59;UBERON:0002417,5.55e-16,60;UBERON:0000916,5.55e-16,60;UBERON:0001007,4.74e-15,145;UBERON:0001555,4.74e-15,145;UBERON:0007026,4.74e-15,145;UBERON:0005911,4.28e-14,82;UBERON:0004119,1.73e-13,160;UBERON:0000925,1.73e-13,160;UBERON:0006595,1.73e-13,160;UBERON:0005409,9.46e-12,25;UBERON:0001041,1.05e-10,87;UBERON:0005177,4.48e-09,101;UBERON:0011216,4.78e-09,223;UBERON:0009569,4.46e-08,112;UBERON:0003914,1.10e-07,117;UBERON:0005256,2.51e-07,122;UBERON:0000490,2.99e-07,148|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116193942869518,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,27.8861076608028,14.7424082501644,11.2250082269467,0,1.22988438543114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.725156697549733,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.67906630284078,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.35359501941948,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.969332746095218,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.282706142867882,0,0,1.06149077404007,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.32991899054908,9.69033142378851,9.88990300573997,10.0431280342735,0.196854963029498,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.79313402068495,2.65013777824443,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.485710993059139,0,0,0,0,0,0,4.39892701215285,3.27839340755936,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.1161073620616,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p7@APOB}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=338 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=603 | |||
|TSSclassifier=N | |||
|UniProt=Q13789 | |||
|association_with_transcript=-463bp_to_X03324_5end | |||
|coexpression_cluster_id=C5 | |||
|description=CAGE_peak_7_at_APOB_5end | |||
|id=chr2:21231979..21231997,- | |||
|ontology_enrichment_celltype=CL:0000181!2.71e-48!12;CL:0000417!2.71e-48!12;CL:0000668!2.71e-48!12;CL:0000414!2.71e-48!12;CL:0000412!2.71e-48!12;CL:0000182!2.71e-48!12;CL:0000223!5.05e-17!59;CL:0002563!7.83e-10!4 | |||
|ontology_enrichment_celltype_v019=CL:0000182;7.78e-51;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,8.38e-51,12;CL:0000223,4.52e-13,58 | |||
|ontology_enrichment_development_v019=UBERON:0004161;2.08e-40;11!UBERON:0009497;3.57e-34;13!UBERON:0001041;1.11e-14;30!UBERON:0003104;3.00e-14;31!CL:0000223;3.92e-09;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002107!4.91e-47!19;UBERON:0006925!4.91e-47!19;UBERON:0008836!4.91e-47!19;UBERON:0008835!1.95e-40!22;UBERON:0003894!1.95e-40!22;UBERON:0009854!1.28e-38!23;UBERON:0007499!2.03e-35!25;UBERON:0009497!2.03e-35!25;UBERON:0000015!2.03e-35!25;UBERON:0002423!2.03e-35!25;UBERON:0006235!2.03e-35!25;UBERON:0004161!2.03e-35!25;UBERON:0005057!5.29e-34!26;UBERON:0009856!5.29e-34!26;UBERON:0002365!2.73e-28!31;UBERON:0002330!2.73e-28!31;UBERON:0003929!1.81e-26!54;UBERON:0002368!6.81e-25!35;UBERON:0000949!4.89e-19!45;UBERON:0004921!1.51e-17!129;UBERON:0004185!1.51e-17!129;UBERON:0002530!3.82e-17!59;UBERON:0005911!1.03e-16!82;UBERON:0005172!2.64e-15!55;UBERON:0005173!2.64e-15!55;UBERON:0001007!3.70e-14!155;UBERON:0001555!3.70e-14!155;UBERON:0007026!3.70e-14!155;UBERON:0002417!1.19e-13!61;UBERON:0000916!1.19e-13!61;UBERON:0004119!9.25e-13!169;UBERON:0000925!9.25e-13!169;UBERON:0006595!9.25e-13!169;UBERON:0000160!3.56e-11!27;UBERON:0007029!3.61e-10!1;UBERON:0001242!7.83e-10!4;UBERON:0001262!7.83e-10!4;UBERON:0004786!7.83e-10!4;UBERON:0004808!7.83e-10!4;UBERON:0001277!7.83e-10!4;UBERON:0000490!4.70e-09!138;UBERON:0005409!1.36e-08!35;UBERON:0000077!3.35e-08!130;UBERON:0003350!4.86e-08!5;UBERON:0001041!6.37e-08!98;UBERON:0005177!3.97e-07!107 | |||
|ontology_enrichment_uberon_v019=UBERON:0002107;2.12e-52;19!UBERON:0006925;2.12e-52;19!UBERON:0002423;1.23e-39;25!UBERON:0002365;7.79e-31;31!UBERON:0002330;7.79e-31;31!UBERON:0002368;4.79e-27;33!UBERON:0002108;6.83e-23;4!UBERON:0000949;2.19e-19;43!UBERON:0000160;5.29e-17;17!UBERON:0001007;1.55e-14;81!UBERON:0005409;2.62e-13;22!UBERON:0005172;7.70e-12;52!UBERON:0005173;7.70e-12;52!UBERON:0002417;5.32e-11;58!UBERON:0000916;5.32e-11;58!UBERON:0002530;1.08e-09;57!UBERON:0004921;6.77e-08;33 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002107,2.12e-52,19;UBERON:0006925,2.12e-52,19;UBERON:0008836,2.12e-52,19;UBERON:0008835,3.78e-45,22;UBERON:0003894,3.78e-45,22;UBERON:0009854,3.76e-43,23;UBERON:0007499,1.24e-39,25;UBERON:0009497,1.24e-39,25;UBERON:0000015,1.24e-39,25;UBERON:0002423,1.24e-39,25;UBERON:0006235,1.24e-39,25;UBERON:0004161,1.24e-39,25;UBERON:0009856,4.44e-38,26;UBERON:0002365,8.41e-32,31;UBERON:0002330,8.41e-32,31;UBERON:0002368,4.56e-28,35;UBERON:0002108,7.94e-23,4;UBERON:0003929,5.29e-22,54;UBERON:0000949,1.25e-21,45;UBERON:0004921,7.61e-19,118;UBERON:0005172,7.25e-18,54;UBERON:0005173,7.25e-18,54;UBERON:0000160,5.67e-17,17;UBERON:0002530,2.86e-16,59;UBERON:0002417,5.55e-16,60;UBERON:0000916,5.55e-16,60;UBERON:0001007,4.74e-15,145;UBERON:0001555,4.74e-15,145;UBERON:0007026,4.74e-15,145;UBERON:0005911,4.28e-14,82;UBERON:0004119,1.73e-13,160;UBERON:0000925,1.73e-13,160;UBERON:0006595,1.73e-13,160;UBERON:0005409,9.46e-12,25;UBERON:0001041,1.05e-10,87;UBERON:0005177,4.48e-09,101;UBERON:0011216,4.78e-09,223;UBERON:0009569,4.46e-08,112;UBERON:0003914,1.10e-07,117;UBERON:0005256,2.51e-07,122;UBERON:0000490,2.99e-07,148 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116193942869518,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,27.8861076608028,14.7424082501644,11.2250082269467,0,1.22988438543114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.725156697549733,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.67906630284078,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.35359501941948,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.969332746095218,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.282706142867882,0,0,1.06149077404007,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.32991899054908,9.69033142378851,9.88990300573997,10.0431280342735,0.196854963029498,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.79313402068495,2.65013777824443,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.485710993059139,0,0,0,0,0,0,4.39892701215285,3.27839340755936,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.1161073620616,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p7@APOB | |||
}} |
Revision as of 16:25, 12 September 2013
Short description: | p7@APOB |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_7_at_APOB_5end |
Coexpression cluster: | C5_Hepatocyte_liver_hepatocellular_Intestinal_kidney_small_pancreas |
Association with transcript: | -463bp_to_X03324_5end |
EntrezGene: | APOB |
HGNC: | 603 |
UniProt: | Q13789 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 8.38e-51 | 12 |
endodermal cell | 4.52e-13 | 58 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.