FFCP PHASE1:Hg19::chr2:154335300..154335320,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=56475|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=24201|TSSclassifier=S|UniProt=Q9NS64|association_with_transcript=1bp_to_ENST00000325926,NM_019845,uc002tyq.1_5end|coexpression_cluster_id=C10|description=CAGE_peak_3_at_RPRM_5end|id=chr2:154335300..154335320,-|ontology_enrichment_celltype=CL:0000047!5.13e-10!8;CL:0002319!5.26e-09!25;CL:0000540!3.34e-08!6;CL:0000031!3.34e-08!6;CL:0000404!3.34e-08!6;CL:0002322!1.02e-07!5;CL:0000133!7.55e-07!59|ontology_enrichment_celltype_v019=CL:0002322;1.09e-16;5!CL:0002586;2.25e-10;3!CL:0000540;2.85e-09;6!CL:0000404;2.85e-09;6!CL:0002319;3.57e-08;25!CL:0000149;7.10e-08;4!CL:0000147;7.45e-08;14|ontology_enrichment_celltype_v019_2=CL:0002322,1.04e-16,5;CL:0000047,1.45e-10,8;CL:0002586,1.80e-10,3;CL:0000540,2.54e-09,6;CL:0000031,2.54e-09,6;CL:0000404,2.54e-09,6;CL:0002319,3.41e-08,25;CL:0000149,6.03e-08,4;CL:0000147,6.45e-08,14|ontology_enrichment_development_v019=CL:0000031;2.85e-09;6!UBERON:0007297;9.31e-07;2|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0005743!5.62e-38!86;UBERON:0000073!2.90e-36!94;UBERON:0001016!2.90e-36!94;UBERON:0001017!5.76e-34!82;UBERON:0002346!1.86e-28!90;UBERON:0003075!2.83e-28!86;UBERON:0007284!2.83e-28!86;UBERON:0001049!1.43e-27!57;UBERON:0005068!1.43e-27!57;UBERON:0006241!1.43e-27!57;UBERON:0007135!1.43e-27!57;UBERON:0000955!4.18e-25!69;UBERON:0006238!4.18e-25!69;UBERON:0007023!5.68e-25!115;UBERON:0002020!7.71e-25!34;UBERON:0003528!7.71e-25!34;UBERON:0003056!1.14e-24!61;UBERON:0001893!1.42e-24!34;UBERON:0002791!1.02e-23!33;UBERON:0001869!1.62e-23!32;UBERON:0002780!4.64e-23!41;UBERON:0001890!4.64e-23!41;UBERON:0006240!4.64e-23!41;UBERON:0002616!6.50e-23!59;UBERON:0003080!2.98e-22!42;UBERON:0000924!6.40e-22!173;UBERON:0006601!6.40e-22!173;UBERON:0004121!1.87e-21!169;UBERON:0000033!3.39e-20!123;UBERON:0000956!3.80e-20!25;UBERON:0000203!3.80e-20!25;UBERON:0000153!6.31e-20!129;UBERON:0007811!6.31e-20!129;UBERON:0001950!4.59e-18!20;UBERON:0002619!5.84e-18!22;UBERON:0001871!9.04e-08!7;UBERON:0000064!2.51e-07!219;UBERON:0000966!3.61e-07!5;UBERON:0005388!3.61e-07!5;UBERON:0001802!3.61e-07!5;UBERON:0000200!3.74e-07!6;UBERON:0002420!8.85e-07!9;UBERON:0007245!8.85e-07!9;UBERON:0010009!8.85e-07!9;UBERON:0010011!8.85e-07!9;UBERON:0000454!8.85e-07!9|ontology_enrichment_uberon_v019=UBERON:0000956;1.50e-14;25!UBERON:0000203;1.50e-14;25!UBERON:0002619;3.98e-14;22!UBERON:0001950;5.12e-13;20!UBERON:0000922;7.77e-12;49!UBERON:0001871;4.68e-11;6!UBERON:0000966;1.16e-10;5!UBERON:0005388;1.16e-10;5!UBERON:0001802;1.16e-10;5!UBERON:0001781;2.25e-10;3!UBERON:0001782;2.25e-10;3!UBERON:0002791;2.52e-10;32!UBERON:0001869;2.80e-10;32!UBERON:0001893;3.07e-09;34!UBERON:0003528;3.29e-09;34!UBERON:0002020;3.29e-09;34!UBERON:0001876;2.65e-07;2!UBERON:0003135;6.82e-07;11|ontology_enrichment_uberon_v019_2=UBERON:0000956,1.47e-14,25;UBERON:0000203,1.47e-14,25;UBERON:0002619,4.08e-14,22;UBERON:0001950,5.42e-13,20;UBERON:0001017,6.60e-13,81;UBERON:0001871,3.73e-11,6;UBERON:0001016,4.11e-11,89;UBERON:0002791,6.55e-11,32;UBERON:0001869,6.55e-11,32;UBERON:0001782,1.80e-10,3;UBERON:0005424,1.80e-10,3;UBERON:0003056,1.96e-10,61;UBERON:0003528,3.86e-10,34;UBERON:0002020,3.86e-10,34;UBERON:0001893,3.86e-10,34;UBERON:0000966,6.39e-09,6;UBERON:0005388,6.39e-09,6;UBERON:0001802,6.39e-09,6;UBERON:0003075,7.30e-09,82;UBERON:0007284,7.30e-09,82;UBERON:0002346,2.95e-08,86;UBERON:0002780,4.98e-08,41;UBERON:0001890,4.98e-08,41;UBERON:0003080,4.98e-08,41;UBERON:0006240,4.98e-08,41;UBERON:0001781,6.03e-08,4;UBERON:0001876,1.78e-07,2;UBERON:0001049,2.01e-07,56;UBERON:0005068,2.01e-07,56;UBERON:0006241,2.01e-07,56;UBERON:0007135,2.01e-07,56;UBERON:0004121,3.06e-07,171;UBERON:0000924,3.06e-07,171;UBERON:0006601,3.06e-07,171;UBERON:0010371,5.76e-07,104;UBERON:0003135,6.96e-07,11|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0.940364164434263,0.286235987131057,0.136874425072884,1.50651167513763,0.0764134057479513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.94826728407911,0,0,0,0.270803863765016,0,0.390178042679635,0,0,0,0,0,0,0,0,0,0,0.637130828648193,1.30216690771284,2.85135613334512,0.150575119077773,0,0,0.473554504088034,3.28451198768419,0,0,0,0,0,0,0,0,0,0,0,0.945348171640679,0.221729397462564,0.790513071238134,0.654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18611685633159,0,0,0,0,0,0.355009592516614,0.10075209822764,0,0,0,0,5.3668430697022,3.31324420803713,4.53156377191122,2.69518743039963,6.30802127189071,4.01475094983413,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.78232971940184,0.117408694235822,0,0,0,0.790204397959275,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=56475 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24201 | |||
|TSSclassifier=S | |||
|UniProt=Q9NS64 | |||
|association_with_transcript=1bp_to_ENST00000325926,NM_019845,uc002tyq.1_5end | |||
|coexpression_cluster_id=C10 | |||
|description=CAGE_peak_3_at_RPRM_5end | |||
|id=chr2:154335300..154335320,- | |||
|ontology_enrichment_celltype=CL:0000047!5.13e-10!8;CL:0002319!5.26e-09!25;CL:0000540!3.34e-08!6;CL:0000031!3.34e-08!6;CL:0000404!3.34e-08!6;CL:0002322!1.02e-07!5;CL:0000133!7.55e-07!59 | |||
|ontology_enrichment_celltype_v019=CL:0002322;1.09e-16;5!CL:0002586;2.25e-10;3!CL:0000540;2.85e-09;6!CL:0000404;2.85e-09;6!CL:0002319;3.57e-08;25!CL:0000149;7.10e-08;4!CL:0000147;7.45e-08;14 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,1.04e-16,5;CL:0000047,1.45e-10,8;CL:0002586,1.80e-10,3;CL:0000540,2.54e-09,6;CL:0000031,2.54e-09,6;CL:0000404,2.54e-09,6;CL:0002319,3.41e-08,25;CL:0000149,6.03e-08,4;CL:0000147,6.45e-08,14 | |||
|ontology_enrichment_development_v019=CL:0000031;2.85e-09;6!UBERON:0007297;9.31e-07;2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005743!5.62e-38!86;UBERON:0000073!2.90e-36!94;UBERON:0001016!2.90e-36!94;UBERON:0001017!5.76e-34!82;UBERON:0002346!1.86e-28!90;UBERON:0003075!2.83e-28!86;UBERON:0007284!2.83e-28!86;UBERON:0001049!1.43e-27!57;UBERON:0005068!1.43e-27!57;UBERON:0006241!1.43e-27!57;UBERON:0007135!1.43e-27!57;UBERON:0000955!4.18e-25!69;UBERON:0006238!4.18e-25!69;UBERON:0007023!5.68e-25!115;UBERON:0002020!7.71e-25!34;UBERON:0003528!7.71e-25!34;UBERON:0003056!1.14e-24!61;UBERON:0001893!1.42e-24!34;UBERON:0002791!1.02e-23!33;UBERON:0001869!1.62e-23!32;UBERON:0002780!4.64e-23!41;UBERON:0001890!4.64e-23!41;UBERON:0006240!4.64e-23!41;UBERON:0002616!6.50e-23!59;UBERON:0003080!2.98e-22!42;UBERON:0000924!6.40e-22!173;UBERON:0006601!6.40e-22!173;UBERON:0004121!1.87e-21!169;UBERON:0000033!3.39e-20!123;UBERON:0000956!3.80e-20!25;UBERON:0000203!3.80e-20!25;UBERON:0000153!6.31e-20!129;UBERON:0007811!6.31e-20!129;UBERON:0001950!4.59e-18!20;UBERON:0002619!5.84e-18!22;UBERON:0001871!9.04e-08!7;UBERON:0000064!2.51e-07!219;UBERON:0000966!3.61e-07!5;UBERON:0005388!3.61e-07!5;UBERON:0001802!3.61e-07!5;UBERON:0000200!3.74e-07!6;UBERON:0002420!8.85e-07!9;UBERON:0007245!8.85e-07!9;UBERON:0010009!8.85e-07!9;UBERON:0010011!8.85e-07!9;UBERON:0000454!8.85e-07!9 | |||
|ontology_enrichment_uberon_v019=UBERON:0000956;1.50e-14;25!UBERON:0000203;1.50e-14;25!UBERON:0002619;3.98e-14;22!UBERON:0001950;5.12e-13;20!UBERON:0000922;7.77e-12;49!UBERON:0001871;4.68e-11;6!UBERON:0000966;1.16e-10;5!UBERON:0005388;1.16e-10;5!UBERON:0001802;1.16e-10;5!UBERON:0001781;2.25e-10;3!UBERON:0001782;2.25e-10;3!UBERON:0002791;2.52e-10;32!UBERON:0001869;2.80e-10;32!UBERON:0001893;3.07e-09;34!UBERON:0003528;3.29e-09;34!UBERON:0002020;3.29e-09;34!UBERON:0001876;2.65e-07;2!UBERON:0003135;6.82e-07;11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000956,1.47e-14,25;UBERON:0000203,1.47e-14,25;UBERON:0002619,4.08e-14,22;UBERON:0001950,5.42e-13,20;UBERON:0001017,6.60e-13,81;UBERON:0001871,3.73e-11,6;UBERON:0001016,4.11e-11,89;UBERON:0002791,6.55e-11,32;UBERON:0001869,6.55e-11,32;UBERON:0001782,1.80e-10,3;UBERON:0005424,1.80e-10,3;UBERON:0003056,1.96e-10,61;UBERON:0003528,3.86e-10,34;UBERON:0002020,3.86e-10,34;UBERON:0001893,3.86e-10,34;UBERON:0000966,6.39e-09,6;UBERON:0005388,6.39e-09,6;UBERON:0001802,6.39e-09,6;UBERON:0003075,7.30e-09,82;UBERON:0007284,7.30e-09,82;UBERON:0002346,2.95e-08,86;UBERON:0002780,4.98e-08,41;UBERON:0001890,4.98e-08,41;UBERON:0003080,4.98e-08,41;UBERON:0006240,4.98e-08,41;UBERON:0001781,6.03e-08,4;UBERON:0001876,1.78e-07,2;UBERON:0001049,2.01e-07,56;UBERON:0005068,2.01e-07,56;UBERON:0006241,2.01e-07,56;UBERON:0007135,2.01e-07,56;UBERON:0004121,3.06e-07,171;UBERON:0000924,3.06e-07,171;UBERON:0006601,3.06e-07,171;UBERON:0010371,5.76e-07,104;UBERON:0003135,6.96e-07,11 | |||
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|short_description=p3@RPRM | |||
}} |
Revision as of 14:08, 12 September 2013
Short description: | p3@RPRM |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_RPRM_5end |
Coexpression cluster: | C10_occipital_temporal_parietal_brain_duodenum_Neurons_Neural |
Association with transcript: | 1bp_to_ENST00000325926, NM_019845, uc002tyq.1_5end |
EntrezGene: | RPRM |
HGNC: | 24201 |
UniProt: | Q9NS64 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 1.04e-16 | 5 |
neuronal stem cell | 1.45e-10 | 8 |
retinal pigment epithelial cell | 1.80e-10 | 3 |
neuron | 2.54e-09 | 6 |
neuroblast | 2.54e-09 | 6 |
electrically signaling cell | 2.54e-09 | 6 |
neural cell | 3.41e-08 | 25 |
visual pigment cell | 6.03e-08 | 4 |
pigment cell | 6.45e-08 | 14 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.