FFCP PHASE1:Hg19::chr1:198488915..198488926,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C580|description=CAGE_peak_at_chr1:198488915..198488926,-|id=chr1:198488915..198488926,-|ontology_enrichment_celltype=CL:0000791!2.18e-35!18;CL:0000789!2.18e-35!18;CL:0002420!2.18e-35!18;CL:0002419!2.18e-35!18;CL:0000790!2.18e-35!18;CL:0000084!2.23e-33!25;CL:0000827!2.23e-33!25;CL:0000838!1.50e-23!52;CL:0000542!5.13e-23!53;CL:0000051!5.13e-23!53;CL:0000625!1.18e-22!11;CL:0000623!7.32e-13!3;CL:0000825!7.32e-13!3;CL:0002087!4.94e-12!119;CL:0000738!9.25e-12!140;CL:0000624!5.44e-11!6;CL:0002031!3.20e-10!124;CL:0000037!1.95e-09!172;CL:0000566!1.95e-09!172;CL:0000815!4.47e-09!2;CL:0000792!4.47e-09!2;CL:0002677!4.47e-09!2;CL:0000988!1.34e-08!182;CL:0002032!3.48e-08!165;CL:0000837!3.48e-08!165|ontology_enrichment_celltype_v019=CL:0000771;3.34e-11;2!CL:0000084;8.41e-08;25|ontology_enrichment_celltype_v019_2=CL:0000771,3.70e-11,2;CL:0000084,8.61e-08,25;CL:0000827,8.61e-08,25|ontology_enrichment_development_v019=UBERON:0001045;5.16e-21;1|ontology_enrichment_disease=DOID:17!1.92e-07!5;DOID:450!1.92e-07!5;DOID:66!1.92e-07!5;DOID:423!1.92e-07!5;DOID:0080000!1.92e-07!5;DOID:11722!1.92e-07!5|ontology_enrichment_disease_v019=DOID:3371;5.16e-21;1!DOID:4549;5.16e-21;1!DOID:5861;5.16e-21;1!DOID:6496;5.16e-21;1|ontology_enrichment_disease_v019_2=DOID:3371,3.45e-21,1;DOID:4549,3.45e-21,1;DOID:5861,3.45e-21,1;DOID:6496,3.45e-21,1|ontology_enrichment_uberon=UBERON:0002370!2.68e-10!4;UBERON:0005058!2.68e-10!4;UBERON:0009113!2.68e-10!4;UBERON:0003295!2.68e-10!4;UBERON:0005562!2.68e-10!4;UBERON:0001042!2.79e-10!10;UBERON:0009145!2.79e-10!10;UBERON:0006562!2.59e-09!11;UBERON:0003351!5.50e-07!6|ontology_enrichment_uberon_v019=UBERON:0002370;5.98e-41;2!UBERON:0005058;5.98e-41;2!UBERON:0009113;5.98e-41;2!UBERON:0001154;5.16e-21;1!UBERON:0001153;5.16e-21;1!UBERON:0009854;5.16e-21;1!UBERON:0004177;4.64e-17;5!UBERON:0005057;4.64e-17;5!UBERON:0002418;6.78e-08;3!UBERON:0004755;6.78e-08;3|ontology_enrichment_uberon_v019_2=UBERON:0002370,4.68e-21,4;UBERON:0005058,4.68e-21,4;UBERON:0009113,4.68e-21,4;UBERON:0003295,4.68e-21,4;UBERON:0005562,4.68e-21,4;UBERON:0001154,5.16e-21,1;UBERON:0001153,5.16e-21,1;UBERON:0001045,5.16e-21,1;UBERON:0003351,2.18e-14,6;UBERON:0004177,1.78e-12,7;UBERON:0005057,1.78e-12,7;UBERON:0000974,5.15e-09,10;UBERON:0003408,5.15e-09,10;UBERON:0001042,5.15e-09,10;UBERON:0009145,5.15e-09,10;UBERON:0006562,2.82e-08,11;UBERON:0009722,2.82e-08,11;UBERON:0007690,2.82e-08,11;UBERON:0002418,5.93e-08,3;UBERON:0004755,5.93e-08,3|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154934401160603,0,0,0,0.200544447470142,0.217010870715852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.306083892370903,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196709770113833,0,1.43921049299656,0,0.32592226663359,0,0,0.222820913770347,0.589211814949674,1.10766947291811,0.812411591295047,0.128091319725675,0.520237390239513,0,0,0,0.14828656316206,0,0,0,0,0.34362744548263,0.253019692019503,0.318565414324097,0,0,0.451725357233318,0.639933055772092,1.24930726552346,0,0.821127996921047,0.604820229674197,0.534880391567015,0.289648807765598,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31780417436063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179389635688862,0,0,0.600182192168805,0.103052529238439,0,0,0,0,0.252433774244115,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.7658523976586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560425719967636,0.591092280605782,0.646882724578552,0.256686072559497,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.476463550915578,0,0,0,0,0,0,0,0,0,0.569134746787313,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.278406173895242,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.38141957765574,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.08773192782946,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.588610280447,0,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.558644917973244,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.227662191351298,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154348316215889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.71273421311226,3.5382587148639,0,0,0,0.217716747896961,0,0.80822463617505,0,0,0,0,0,0,0,0,0,0,0.805095174364105,0|short_description=p@chr1:198488915..198488926,-}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C580 | |||
|description=CAGE_peak_at_chr1:198488915..198488926,- | |||
|id=chr1:198488915..198488926,- | |||
|ontology_enrichment_celltype=CL:0000791!2.18e-35!18;CL:0000789!2.18e-35!18;CL:0002420!2.18e-35!18;CL:0002419!2.18e-35!18;CL:0000790!2.18e-35!18;CL:0000084!2.23e-33!25;CL:0000827!2.23e-33!25;CL:0000838!1.50e-23!52;CL:0000542!5.13e-23!53;CL:0000051!5.13e-23!53;CL:0000625!1.18e-22!11;CL:0000623!7.32e-13!3;CL:0000825!7.32e-13!3;CL:0002087!4.94e-12!119;CL:0000738!9.25e-12!140;CL:0000624!5.44e-11!6;CL:0002031!3.20e-10!124;CL:0000037!1.95e-09!172;CL:0000566!1.95e-09!172;CL:0000815!4.47e-09!2;CL:0000792!4.47e-09!2;CL:0002677!4.47e-09!2;CL:0000988!1.34e-08!182;CL:0002032!3.48e-08!165;CL:0000837!3.48e-08!165 | |||
|ontology_enrichment_celltype_v019=CL:0000771;3.34e-11;2!CL:0000084;8.41e-08;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000771,3.70e-11,2;CL:0000084,8.61e-08,25;CL:0000827,8.61e-08,25 | |||
|ontology_enrichment_development_v019=UBERON:0001045;5.16e-21;1 | |||
|ontology_enrichment_disease=DOID:17!1.92e-07!5;DOID:450!1.92e-07!5;DOID:66!1.92e-07!5;DOID:423!1.92e-07!5;DOID:0080000!1.92e-07!5;DOID:11722!1.92e-07!5 | |||
|ontology_enrichment_disease_v019=DOID:3371;5.16e-21;1!DOID:4549;5.16e-21;1!DOID:5861;5.16e-21;1!DOID:6496;5.16e-21;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3371,3.45e-21,1;DOID:4549,3.45e-21,1;DOID:5861,3.45e-21,1;DOID:6496,3.45e-21,1 | |||
|ontology_enrichment_uberon=UBERON:0002370!2.68e-10!4;UBERON:0005058!2.68e-10!4;UBERON:0009113!2.68e-10!4;UBERON:0003295!2.68e-10!4;UBERON:0005562!2.68e-10!4;UBERON:0001042!2.79e-10!10;UBERON:0009145!2.79e-10!10;UBERON:0006562!2.59e-09!11;UBERON:0003351!5.50e-07!6 | |||
|ontology_enrichment_uberon_v019=UBERON:0002370;5.98e-41;2!UBERON:0005058;5.98e-41;2!UBERON:0009113;5.98e-41;2!UBERON:0001154;5.16e-21;1!UBERON:0001153;5.16e-21;1!UBERON:0009854;5.16e-21;1!UBERON:0004177;4.64e-17;5!UBERON:0005057;4.64e-17;5!UBERON:0002418;6.78e-08;3!UBERON:0004755;6.78e-08;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,4.68e-21,4;UBERON:0005058,4.68e-21,4;UBERON:0009113,4.68e-21,4;UBERON:0003295,4.68e-21,4;UBERON:0005562,4.68e-21,4;UBERON:0001154,5.16e-21,1;UBERON:0001153,5.16e-21,1;UBERON:0001045,5.16e-21,1;UBERON:0003351,2.18e-14,6;UBERON:0004177,1.78e-12,7;UBERON:0005057,1.78e-12,7;UBERON:0000974,5.15e-09,10;UBERON:0003408,5.15e-09,10;UBERON:0001042,5.15e-09,10;UBERON:0009145,5.15e-09,10;UBERON:0006562,2.82e-08,11;UBERON:0009722,2.82e-08,11;UBERON:0007690,2.82e-08,11;UBERON:0002418,5.93e-08,3;UBERON:0004755,5.93e-08,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154934401160603,0,0,0,0.200544447470142,0.217010870715852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.306083892370903,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196709770113833,0,1.43921049299656,0,0.32592226663359,0,0,0.222820913770347,0.589211814949674,1.10766947291811,0.812411591295047,0.128091319725675,0.520237390239513,0,0,0,0.14828656316206,0,0,0,0,0.34362744548263,0.253019692019503,0.318565414324097,0,0,0.451725357233318,0.639933055772092,1.24930726552346,0,0.821127996921047,0.604820229674197,0.534880391567015,0.289648807765598,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31780417436063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179389635688862,0,0,0.600182192168805,0.103052529238439,0,0,0,0,0.252433774244115,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.7658523976586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560425719967636,0.591092280605782,0.646882724578552,0.256686072559497,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.476463550915578,0,0,0,0,0,0,0,0,0,0.569134746787313,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.278406173895242,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.38141957765574,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.08773192782946,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.588610280447,0,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.558644917973244,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.227662191351298,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154348316215889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.71273421311226,3.5382587148639,0,0,0,0.217716747896961,0,0.80822463617505,0,0,0,0,0,0,0,0,0,0,0.805095174364105,0 | |||
|short_description=p@chr1:198488915..198488926,- | |||
}} |
Revision as of 02:36, 12 September 2013
Short description: | p@chr1:198488915..198488926, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr1:198488915..198488926, - |
Coexpression cluster: | C580_chronic_thymus_Hodgkin_acute_iPS_vein_Burkitt |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
eosinophil | 3.70e-11 | 2 |
T cell | 8.61e-08 | 25 |
pro-T cell | 8.61e-08 | 25 |
Ontology term | p-value | n |
---|---|---|
thymus | 4.68e-21 | 4 |
hemolymphoid system gland | 4.68e-21 | 4 |
thymic region | 4.68e-21 | 4 |
pharyngeal gland | 4.68e-21 | 4 |
thymus primordium | 4.68e-21 | 4 |
vermiform appendix | 5.16e-21 | 1 |
caecum | 5.16e-21 | 1 |
midgut | 5.16e-21 | 1 |
pharyngeal epithelium | 2.18e-14 | 6 |
hemopoietic organ | 1.78e-12 | 7 |
immune organ | 1.78e-12 | 7 |
neck | 5.15e-09 | 10 |
gland of gut | 5.15e-09 | 10 |
chordate pharynx | 5.15e-09 | 10 |
pharyngeal region of foregut | 5.15e-09 | 10 |
pharynx | 2.82e-08 | 11 |
entire pharyngeal arch endoderm | 2.82e-08 | 11 |
early pharyngeal endoderm | 2.82e-08 | 11 |
cartilage tissue | 5.93e-08 | 3 |
skeletal tissue | 5.93e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
chondrosarcoma | 3.45e-21 | 1 |
extraosseous chondrosarcoma | 3.45e-21 | 1 |
myxoid chondrosarcoma | 3.45e-21 | 1 |
extraskeletal myxoid chondrosarcoma | 3.45e-21 | 1 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.