FFCP PHASE1:Hg19::chr1:183538319..183538365,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=4688|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=7661|TSSclassifier=S|UniProt=B1ALB7,B1ALB6|association_with_transcript=0bp_to_ENST00000419402,ENST00000420553_5end|coexpression_cluster_id=C3913|description=CAGE_peak_6_at_NCF2_5end|id=chr1:183538319..183538365,-|ontology_enrichment_celltype=CL:0000066!9.29e-15!254;CL:0000063!9.78e-10!578;CL:0002368!3.20e-09!13;CL:0000548!4.68e-07!679;CL:0000004!4.68e-07!679;CL:0000255!4.68e-07!679;CL:0002076!5.69e-07!43;CL:0000012!9.25e-07!682|ontology_enrichment_celltype_v019=CL:0002368;6.24e-18;13!CL:1000449;2.58e-14;15!CL:1000507;5.89e-13;10!CL:1000494;5.89e-13;10!CL:0002681;1.10e-12;12!CL:0002584;1.10e-12;12!CL:1000497;2.78e-12;17!CL:0002518;2.78e-12;17!CL:0002202;6.06e-11;9!CL:0002632;6.06e-11;9!CL:0002076;2.30e-09;42!CL:0000307;2.85e-07;3!CL:0002328;3.24e-07;3!CL:0002166;4.23e-07;3|ontology_enrichment_celltype_v019_2=CL:0000066,3.66e-21,253;CL:0002368,6.53e-18,13;CL:1000449,2.39e-14,15;CL:1000507,5.51e-13,10;CL:1000494,5.51e-13,10;CL:0002681,1.06e-12,12;CL:0002584,1.06e-12,12;CL:1000497,2.61e-12,17;CL:0002518,2.61e-12,17;CL:0002076,3.59e-12,42;CL:0002202,6.29e-11,9;CL:0002632,6.29e-11,9;CL:0000223,2.21e-07,58;CL:0000068,2.92e-07,3;CL:0000069,2.92e-07,3;CL:0000307,2.92e-07,3;CL:0000377,2.92e-07,3;CL:0002328,3.29e-07,3;CL:0002166,4.25e-07,3|ontology_enrichment_development_v019=CL:0000377;2.85e-07;3|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=|ontology_enrichment_uberon_v019=UBERON:0006555;2.58e-14;15!UBERON:0004819;2.58e-14;15!UBERON:0001285;2.58e-14;15!UBERON:0007684;2.58e-14;15!UBERON:0004211;5.89e-13;10!UBERON:0009773;5.89e-13;10!UBERON:0001231;5.89e-13;10!UBERON:0004810;5.89e-13;10!UBERON:0001225;1.10e-12;12!UBERON:0008987;1.10e-12;12!UBERON:0006554;3.17e-11;30!UBERON:0001008;3.17e-11;30!UBERON:0001851;1.06e-09;15!UBERON:0000353;1.06e-09;15!UBERON:0004807;1.02e-08;22!UBERON:0002113;7.07e-08;24!UBERON:0011143;7.07e-08;24!UBERON:0007196;1.24e-07;15!UBERON:0001558;1.24e-07;15!UBERON:0000489;2.81e-07;29!UBERON:0005911;3.20e-07;36!UBERON:0004815;3.24e-07;3!UBERON:0002031;3.24e-07;3!UBERON:0000486;7.04e-07;12|ontology_enrichment_uberon_v019_2=UBERON:0004211,2.39e-14,15;UBERON:0009773,2.39e-14,15;UBERON:0001231,2.39e-14,15;UBERON:0001285,2.39e-14,15;UBERON:0007684,2.39e-14,15;UBERON:0004208,2.39e-14,15;UBERON:0006554,4.64e-14,47;UBERON:0001008,1.24e-13,48;UBERON:0006555,2.90e-13,16;UBERON:0004819,2.90e-13,16;UBERON:0004810,5.51e-13,10;UBERON:0001225,1.06e-12,12;UBERON:0008987,1.06e-12,12;UBERON:0001851,1.02e-09,15;UBERON:0000353,1.02e-09,15;UBERON:0001004,1.34e-08,74;UBERON:0004119,1.83e-08,160;UBERON:0000925,1.83e-08,160;UBERON:0006595,1.83e-08,160;UBERON:0007196,1.23e-07,15;UBERON:0001558,1.23e-07,15;UBERON:0005911,1.29e-07,82;UBERON:0005177,1.80e-07,101;UBERON:0004815,3.29e-07,3;UBERON:0002031,3.29e-07,3;UBERON:0002113,4.40e-07,26;UBERON:0003918,4.40e-07,26;UBERON:0011143,4.40e-07,26;UBERON:0005095,4.40e-07,26;UBERON:0007687,4.40e-07,26;UBERON:0005178,7.61e-07,34;UBERON:0002224,7.61e-07,34|phase1_expression=0,0.428201047781966,0,0,0,0,0,0,0,7.37201809504527,4.18680700783456,3.27662058195258,13.1883489114227,0,0,0.672325146451775,0,1.46062018077475,0.487932798790507,0,0.204000691244253,0,0,0,0,0.229240217243854,0.0821005894499457,0,0,0,0.154816123316076,16.5495820406207,24.6988853398165,15.1599144168383,0,0,0,0,0.200544447470142,0,0.223915474239924,0,0.257575567634187,0,0,0,0.929716147622738,0,0,0.575384784644301,0.512321413058201,0,0.344745680736619,0.645484683583826,0,0.376484679085209,0,0,0.306083892370903,0,0.639337125799041,0,0.598390972864896,0,0,0.56738522469114,1.24564449799115,0.75374599577023,1.5644487552606,0,1.21079900526674,0.368277635987565,0.632924774881769,0.211255286311942,0.212604299965044,0,0,0,0.32145117339416,0.570025487482497,0.19891667719909,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.53007406669196,1.00267582127178,0.869079113764942,3.9764297352555,2.43317435151318,0.189069634328136,0.886917589850256,0.175669571386252,0.0654895377488563,0.364295288292542,0.741568885568859,0.649094787309367,0.348259474598534,0.531831842075461,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.87780264148325,0,2.48485975847659,0.25326102332916,0.397227542439656,0,0.354668382198357,0.560677600142307,0,0.49333509683432,0,0.134710672069688,0,0.151357427644931,0,0,0,0.570471821544449,0,0,0,0,0,0,0,0,0.247266929278557,0,0,0,0,0,0,1.5324389789951,0,0,1.07633781413317,0,0.211931901159562,0.900273288253207,0.412210116953756,0,0.18611685633159,0.675105328965065,0.194874010322397,1.26216887122057,0,0,0.355009592516614,1.10827308050404,0.169560592310488,10.6293469239813,23.4561663708118,1.43402297694502,0,0,0,0,0,0,0,0,0,0,0,0.236613600079688,0,0,0.220587945464788,0.217879444092406,0,0.134831308160164,0,0,0,0,0,0,0,0,0,0,0.245976877086227,0.686271241194102,1.5365039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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=4688 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7661 | |||
|TSSclassifier=S | |||
|UniProt=B1ALB7,B1ALB6 | |||
|association_with_transcript=0bp_to_ENST00000419402,ENST00000420553_5end | |||
|coexpression_cluster_id=C3913 | |||
|description=CAGE_peak_6_at_NCF2_5end | |||
|id=chr1:183538319..183538365,- | |||
|ontology_enrichment_celltype=CL:0000066!9.29e-15!254;CL:0000063!9.78e-10!578;CL:0002368!3.20e-09!13;CL:0000548!4.68e-07!679;CL:0000004!4.68e-07!679;CL:0000255!4.68e-07!679;CL:0002076!5.69e-07!43;CL:0000012!9.25e-07!682 | |||
|ontology_enrichment_celltype_v019=CL:0002368;6.24e-18;13!CL:1000449;2.58e-14;15!CL:1000507;5.89e-13;10!CL:1000494;5.89e-13;10!CL:0002681;1.10e-12;12!CL:0002584;1.10e-12;12!CL:1000497;2.78e-12;17!CL:0002518;2.78e-12;17!CL:0002202;6.06e-11;9!CL:0002632;6.06e-11;9!CL:0002076;2.30e-09;42!CL:0000307;2.85e-07;3!CL:0002328;3.24e-07;3!CL:0002166;4.23e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,3.66e-21,253;CL:0002368,6.53e-18,13;CL:1000449,2.39e-14,15;CL:1000507,5.51e-13,10;CL:1000494,5.51e-13,10;CL:0002681,1.06e-12,12;CL:0002584,1.06e-12,12;CL:1000497,2.61e-12,17;CL:0002518,2.61e-12,17;CL:0002076,3.59e-12,42;CL:0002202,6.29e-11,9;CL:0002632,6.29e-11,9;CL:0000223,2.21e-07,58;CL:0000068,2.92e-07,3;CL:0000069,2.92e-07,3;CL:0000307,2.92e-07,3;CL:0000377,2.92e-07,3;CL:0002328,3.29e-07,3;CL:0002166,4.25e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000377;2.85e-07;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0006555;2.58e-14;15!UBERON:0004819;2.58e-14;15!UBERON:0001285;2.58e-14;15!UBERON:0007684;2.58e-14;15!UBERON:0004211;5.89e-13;10!UBERON:0009773;5.89e-13;10!UBERON:0001231;5.89e-13;10!UBERON:0004810;5.89e-13;10!UBERON:0001225;1.10e-12;12!UBERON:0008987;1.10e-12;12!UBERON:0006554;3.17e-11;30!UBERON:0001008;3.17e-11;30!UBERON:0001851;1.06e-09;15!UBERON:0000353;1.06e-09;15!UBERON:0004807;1.02e-08;22!UBERON:0002113;7.07e-08;24!UBERON:0011143;7.07e-08;24!UBERON:0007196;1.24e-07;15!UBERON:0001558;1.24e-07;15!UBERON:0000489;2.81e-07;29!UBERON:0005911;3.20e-07;36!UBERON:0004815;3.24e-07;3!UBERON:0002031;3.24e-07;3!UBERON:0000486;7.04e-07;12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004211,2.39e-14,15;UBERON:0009773,2.39e-14,15;UBERON:0001231,2.39e-14,15;UBERON:0001285,2.39e-14,15;UBERON:0007684,2.39e-14,15;UBERON:0004208,2.39e-14,15;UBERON:0006554,4.64e-14,47;UBERON:0001008,1.24e-13,48;UBERON:0006555,2.90e-13,16;UBERON:0004819,2.90e-13,16;UBERON:0004810,5.51e-13,10;UBERON:0001225,1.06e-12,12;UBERON:0008987,1.06e-12,12;UBERON:0001851,1.02e-09,15;UBERON:0000353,1.02e-09,15;UBERON:0001004,1.34e-08,74;UBERON:0004119,1.83e-08,160;UBERON:0000925,1.83e-08,160;UBERON:0006595,1.83e-08,160;UBERON:0007196,1.23e-07,15;UBERON:0001558,1.23e-07,15;UBERON:0005911,1.29e-07,82;UBERON:0005177,1.80e-07,101;UBERON:0004815,3.29e-07,3;UBERON:0002031,3.29e-07,3;UBERON:0002113,4.40e-07,26;UBERON:0003918,4.40e-07,26;UBERON:0011143,4.40e-07,26;UBERON:0005095,4.40e-07,26;UBERON:0007687,4.40e-07,26;UBERON:0005178,7.61e-07,34;UBERON:0002224,7.61e-07,34 | |||
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| |||
|short_description=p6@NCF2 | |||
}} |
Revision as of 02:13, 12 September 2013
Short description: | p6@NCF2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_6_at_NCF2_5end |
Coexpression cluster: | C3913_gall_bile_Small_lung_Bronchial_Tracheal_large |
Association with transcript: | 0bp_to_ENST00000419402, ENST00000420553_5end |
EntrezGene: | NCF2 |
HGNC: | 7661 |
UniProt: | B1ALB7B1ALB6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 3.66e-21 | 253 |
respiratory epithelial cell | 6.53e-18 | 13 |
epithelial cell of nephron | 2.39e-14 | 15 |
kidney tubule cell | 5.51e-13 | 10 |
nephron tubule epithelial cell | 5.51e-13 | 10 |
kidney cortical cell | 1.06e-12 | 12 |
renal cortical epithelial cell | 1.06e-12 | 12 |
kidney cell | 2.61e-12 | 17 |
kidney epithelial cell | 2.61e-12 | 17 |
endo-epithelial cell | 3.59e-12 | 42 |
epithelial cell of tracheobronchial tree | 6.29e-11 | 9 |
epithelial cell of lower respiratory tract | 6.29e-11 | 9 |
endodermal cell | 2.21e-07 | 58 |
duct epithelial cell | 2.92e-07 | 3 |
branched duct epithelial cell | 2.92e-07 | 3 |
tracheal epithelial cell | 2.92e-07 | 3 |
tracheoblast | 2.92e-07 | 3 |
bronchial epithelial cell | 3.29e-07 | 3 |
epithelial cell of Malassez | 4.25e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
nephron epithelium | 2.39e-14 | 15 |
renal tubule | 2.39e-14 | 15 |
nephron tubule | 2.39e-14 | 15 |
nephron | 2.39e-14 | 15 |
uriniferous tubule | 2.39e-14 | 15 |
nephrogenic mesenchyme | 2.39e-14 | 15 |
urinary system structure | 4.64e-14 | 47 |
renal system | 1.24e-13 | 48 |
excretory tube | 2.90e-13 | 16 |
kidney epithelium | 2.90e-13 | 16 |
nephron tubule epithelium | 5.51e-13 | 10 |
cortex of kidney | 1.06e-12 | 12 |
renal parenchyma | 1.06e-12 | 12 |
cortex | 1.02e-09 | 15 |
parenchyma | 1.02e-09 | 15 |
respiratory system | 1.34e-08 | 74 |
endoderm-derived structure | 1.83e-08 | 160 |
endoderm | 1.83e-08 | 160 |
presumptive endoderm | 1.83e-08 | 160 |
tracheobronchial tree | 1.23e-07 | 15 |
lower respiratory tract | 1.23e-07 | 15 |
endo-epithelium | 1.29e-07 | 82 |
trunk region element | 1.80e-07 | 101 |
lower respiratory tract epithelium | 3.29e-07 | 3 |
epithelium of bronchus | 3.29e-07 | 3 |
kidney | 4.40e-07 | 26 |
kidney mesenchyme | 4.40e-07 | 26 |
upper urinary tract | 4.40e-07 | 26 |
kidney rudiment | 4.40e-07 | 26 |
kidney field | 4.40e-07 | 26 |
thoracic cavity element | 7.61e-07 | 34 |
thoracic cavity | 7.61e-07 | 34 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.