FFCP PHASE1:Hg19::chr18:21478695..21478707,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=3909|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=6483|TSSclassifier=N|UniProt=Q59HA6|association_with_transcript=-260bp_to_AB208853_5end|coexpression_cluster_id=C363|description=CAGE_peak_9_at_LAMA3_5end|id=chr18:21478695..21478707,+|ontology_enrichment_celltype=CL:0002076!5.95e-29!43;CL:0000066!1.40e-22!254;CL:0000223!2.48e-19!59;CL:0002251!1.04e-16!21;CL:0002368!4.36e-10!13;CL:0002166!4.71e-10!3;CL:0002621!8.40e-10!3;CL:0002541!1.97e-09!3;CL:0002159!8.11e-08!13;CL:0002327!2.92e-07!4|ontology_enrichment_celltype_v019=CL:0002166;3.44e-26;3!CL:0002159;4.80e-21;14!CL:0000240;6.77e-13;6!CL:0000311;6.77e-13;6!CL:0000079;6.77e-13;6!CL:0000237;6.77e-13;6!CL:0002076;1.33e-12;42!CL:0002541;1.66e-12;3!CL:0002621;1.86e-12;3!CL:0000349;5.53e-11;19!CL:0002368;2.57e-10;13!CL:0002336;1.48e-09;1!CL:0002261;1.48e-09;1!CL:0002170;1.48e-09;1!CL:0002327;2.51e-09;4!CL:0000362;8.99e-09;9!CL:0002537;1.25e-07;5!CL:0000312;1.71e-07;5!CL:0002077;1.79e-07;34!CL:0002251;6.57e-07;20|ontology_enrichment_celltype_v019_2=CL:0002166,2.07e-26,3;CL:0002159,4.03e-21,14;CL:0002076,8.79e-15,42;CL:0000240,7.36e-13,6;CL:0000311,7.36e-13,6;CL:0000079,7.36e-13,6;CL:0000237,7.36e-13,6;CL:0000036,7.36e-13,6;CL:0000357,7.36e-13,6;CL:0000114,7.36e-13,6;CL:0002541,1.71e-12,3;CL:0002621,1.71e-12,3;CL:0000349,5.78e-11,19;CL:0002368,2.39e-10,13;CL:0000223,2.40e-10,58;CL:0000066,8.46e-10,253;CL:0002336,1.91e-09,1;CL:0002261,1.91e-09,1;CL:0002170,1.91e-09,1;CL:0002327,2.46e-09,4;CL:0000362,9.24e-09,9;CL:0002077,1.97e-08,34;CL:0002537,1.50e-07,5;CL:0000312,1.66e-07,5;CL:0002251,6.42e-07,20|ontology_enrichment_development_v019=CL:0000357;6.77e-13;6!CL:0000114;6.77e-13;6|ontology_enrichment_disease=DOID:1749!9.71e-11!14;DOID:305!4.75e-07!106|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0005631!7.00e-15!14;UBERON:0000158!7.00e-15!14;UBERON:0004119!3.97e-12!169;UBERON:0000925!3.97e-12!169;UBERON:0006595!3.97e-12!169;UBERON:0000161!1.75e-10!35;UBERON:0003124!3.63e-10!7;UBERON:0001949!8.40e-10!3;UBERON:0000476!1.97e-09!3;UBERON:0000920!1.97e-09!3;UBERON:0000166!2.91e-09!21;UBERON:0003729!3.93e-09!5;UBERON:0001004!4.30e-09!72;UBERON:0000165!4.03e-08!28;UBERON:0000930!4.03e-08!28;UBERON:0000478!6.44e-08!24;UBERON:0001708!1.31e-07!4;UBERON:0001704!1.31e-07!4;UBERON:0004923!2.64e-07!57;UBERON:0001911!2.92e-07!4;UBERON:0005333!2.92e-07!4;UBERON:0008425!2.92e-07!4;UBERON:0005311!2.92e-07!4;UBERON:0001007!6.17e-07!155;UBERON:0001555!6.17e-07!155;UBERON:0007026!6.17e-07!155|ontology_enrichment_uberon_v019=UBERON:0001708;8.31e-20;4!UBERON:0008895;8.31e-20;4!UBERON:0011159;5.75e-16;5!UBERON:0005631;7.76e-14;10!UBERON:0000158;7.76e-14;10!UBERON:0003124;1.66e-12;3!UBERON:0000920;1.66e-12;3!UBERON:0001949;1.86e-12;3!UBERON:0003729;1.47e-10;13!UBERON:0001911;2.51e-09;4!UBERON:0000478;1.17e-08;24!UBERON:0011137;1.56e-07;11!UBERON:0010323;1.56e-07;11!UBERON:0004923;3.56e-07;55!UBERON:0000344;6.57e-07;20!UBERON:0000486;6.83e-07;12|ontology_enrichment_uberon_v019_2=UBERON:0001708,5.69e-20,4;UBERON:0008895,5.69e-20,4;UBERON:0011159,4.25e-16,5;UBERON:0005631,6.25e-15,14;UBERON:0000158,6.25e-15,14;UBERON:0010188,1.65e-13,6;UBERON:0002539,1.65e-13,6;UBERON:0008816,1.65e-13,6;UBERON:0001949,1.71e-12,3;UBERON:0000920,1.71e-12,3;UBERON:0003124,1.46e-11,7;UBERON:0003729,1.42e-10,13;UBERON:0001911,2.46e-09,4;UBERON:0005333,2.46e-09,4;UBERON:0008425,2.46e-09,4;UBERON:0005311,2.46e-09,4;UBERON:0004923,5.31e-09,66;UBERON:0000478,1.21e-08,24;UBERON:0003102,1.84e-08,99;UBERON:0010323,1.37e-07,11;UBERON:0000344,6.42e-07,20|phase1_expression=0,0.214100523890983,0.140954404095971,0,0,0,0,0,0,0,0,0.218441372130172,0.263766978228454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.919421224478927,0,1.10926203050036,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.32592226663359,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.05847791642923,2.72746120590835,0.860413786167011,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.38474715694639,0,0,0,0,0,0,0,0,0,0,1.97550513735526,0,1.10581869652794,1.29623823221941,0,0,0,0,0,0,0,0,0,0,0,0,0,1.87467667973554,8.23112428174412,3.40260233381728,2.68675568108545,1.45316969256981,0.766765358330422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.66435439510497,0.30239029332968,0,0,0,0,0,0,0,0,0,0,0,0,0,5.61418116849198,0.920809889358963,0,0,0,0,0.0770153371044148,0,0,0.211103257785751,0,0,0,0,0,0,0,0.831076008928724,0.223874754722178,0,0,0,0,0,0,0,0,0,1.30012049207304,0,0,0,0,0,0,0,0,0,1.81813406897076,1.53752053892085,0.638063562472921,1.6185244936888,0,0,0,0,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=3909 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6483 | |||
|TSSclassifier=N | |||
|UniProt=Q59HA6 | |||
|association_with_transcript=-260bp_to_AB208853_5end | |||
|coexpression_cluster_id=C363 | |||
|description=CAGE_peak_9_at_LAMA3_5end | |||
|id=chr18:21478695..21478707,+ | |||
|ontology_enrichment_celltype=CL:0002076!5.95e-29!43;CL:0000066!1.40e-22!254;CL:0000223!2.48e-19!59;CL:0002251!1.04e-16!21;CL:0002368!4.36e-10!13;CL:0002166!4.71e-10!3;CL:0002621!8.40e-10!3;CL:0002541!1.97e-09!3;CL:0002159!8.11e-08!13;CL:0002327!2.92e-07!4 | |||
|ontology_enrichment_celltype_v019=CL:0002166;3.44e-26;3!CL:0002159;4.80e-21;14!CL:0000240;6.77e-13;6!CL:0000311;6.77e-13;6!CL:0000079;6.77e-13;6!CL:0000237;6.77e-13;6!CL:0002076;1.33e-12;42!CL:0002541;1.66e-12;3!CL:0002621;1.86e-12;3!CL:0000349;5.53e-11;19!CL:0002368;2.57e-10;13!CL:0002336;1.48e-09;1!CL:0002261;1.48e-09;1!CL:0002170;1.48e-09;1!CL:0002327;2.51e-09;4!CL:0000362;8.99e-09;9!CL:0002537;1.25e-07;5!CL:0000312;1.71e-07;5!CL:0002077;1.79e-07;34!CL:0002251;6.57e-07;20 | |||
|ontology_enrichment_celltype_v019_2=CL:0002166,2.07e-26,3;CL:0002159,4.03e-21,14;CL:0002076,8.79e-15,42;CL:0000240,7.36e-13,6;CL:0000311,7.36e-13,6;CL:0000079,7.36e-13,6;CL:0000237,7.36e-13,6;CL:0000036,7.36e-13,6;CL:0000357,7.36e-13,6;CL:0000114,7.36e-13,6;CL:0002541,1.71e-12,3;CL:0002621,1.71e-12,3;CL:0000349,5.78e-11,19;CL:0002368,2.39e-10,13;CL:0000223,2.40e-10,58;CL:0000066,8.46e-10,253;CL:0002336,1.91e-09,1;CL:0002261,1.91e-09,1;CL:0002170,1.91e-09,1;CL:0002327,2.46e-09,4;CL:0000362,9.24e-09,9;CL:0002077,1.97e-08,34;CL:0002537,1.50e-07,5;CL:0000312,1.66e-07,5;CL:0002251,6.42e-07,20 | |||
|ontology_enrichment_development_v019=CL:0000357;6.77e-13;6!CL:0000114;6.77e-13;6 | |||
|ontology_enrichment_disease=DOID:1749!9.71e-11!14;DOID:305!4.75e-07!106 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005631!7.00e-15!14;UBERON:0000158!7.00e-15!14;UBERON:0004119!3.97e-12!169;UBERON:0000925!3.97e-12!169;UBERON:0006595!3.97e-12!169;UBERON:0000161!1.75e-10!35;UBERON:0003124!3.63e-10!7;UBERON:0001949!8.40e-10!3;UBERON:0000476!1.97e-09!3;UBERON:0000920!1.97e-09!3;UBERON:0000166!2.91e-09!21;UBERON:0003729!3.93e-09!5;UBERON:0001004!4.30e-09!72;UBERON:0000165!4.03e-08!28;UBERON:0000930!4.03e-08!28;UBERON:0000478!6.44e-08!24;UBERON:0001708!1.31e-07!4;UBERON:0001704!1.31e-07!4;UBERON:0004923!2.64e-07!57;UBERON:0001911!2.92e-07!4;UBERON:0005333!2.92e-07!4;UBERON:0008425!2.92e-07!4;UBERON:0005311!2.92e-07!4;UBERON:0001007!6.17e-07!155;UBERON:0001555!6.17e-07!155;UBERON:0007026!6.17e-07!155 | |||
|ontology_enrichment_uberon_v019=UBERON:0001708;8.31e-20;4!UBERON:0008895;8.31e-20;4!UBERON:0011159;5.75e-16;5!UBERON:0005631;7.76e-14;10!UBERON:0000158;7.76e-14;10!UBERON:0003124;1.66e-12;3!UBERON:0000920;1.66e-12;3!UBERON:0001949;1.86e-12;3!UBERON:0003729;1.47e-10;13!UBERON:0001911;2.51e-09;4!UBERON:0000478;1.17e-08;24!UBERON:0011137;1.56e-07;11!UBERON:0010323;1.56e-07;11!UBERON:0004923;3.56e-07;55!UBERON:0000344;6.57e-07;20!UBERON:0000486;6.83e-07;12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001708,5.69e-20,4;UBERON:0008895,5.69e-20,4;UBERON:0011159,4.25e-16,5;UBERON:0005631,6.25e-15,14;UBERON:0000158,6.25e-15,14;UBERON:0010188,1.65e-13,6;UBERON:0002539,1.65e-13,6;UBERON:0008816,1.65e-13,6;UBERON:0001949,1.71e-12,3;UBERON:0000920,1.71e-12,3;UBERON:0003124,1.46e-11,7;UBERON:0003729,1.42e-10,13;UBERON:0001911,2.46e-09,4;UBERON:0005333,2.46e-09,4;UBERON:0008425,2.46e-09,4;UBERON:0005311,2.46e-09,4;UBERON:0004923,5.31e-09,66;UBERON:0000478,1.21e-08,24;UBERON:0003102,1.84e-08,99;UBERON:0010323,1.37e-07,11;UBERON:0000344,6.42e-07,20 | |||
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|short_description=p9@LAMA3 | |||
}} |
Revision as of 17:01, 11 September 2013
Short description: | p9@LAMA3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_9_at_LAMA3_5end |
Coexpression cluster: | C363_Mallassezderived_Gingival_Keratinocyte_Mammary_Prostate_Small_Urothelial |
Association with transcript: | -260bp_to_AB208853_5end |
EntrezGene: | LAMA3 |
HGNC: | 6483 |
UniProt: | Q59HA6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of Malassez | 2.07e-26 | 3 |
general ecto-epithelial cell | 4.03e-21 | 14 |
endo-epithelial cell | 8.79e-15 | 42 |
stratified squamous epithelial cell | 7.36e-13 | 6 |
keratin accumulating cell | 7.36e-13 | 6 |
stratified epithelial cell | 7.36e-13 | 6 |
keratinizing barrier epithelial cell | 7.36e-13 | 6 |
epithelial fate stem cell | 7.36e-13 | 6 |
stratified epithelial stem cell | 7.36e-13 | 6 |
surface ectodermal cell | 7.36e-13 | 6 |
chorionic membrane mesenchymal stem cell | 1.71e-12 | 3 |
gingival epithelial cell | 1.71e-12 | 3 |
extraembryonic cell | 5.78e-11 | 19 |
respiratory epithelial cell | 2.39e-10 | 13 |
endodermal cell | 2.40e-10 | 58 |
epithelial cell | 8.46e-10 | 253 |
buccal mucosa cell | 1.91e-09 | 1 |
endothelial cell of viscerocranial mucosa | 1.91e-09 | 1 |
keratinized cell of the oral mucosa | 1.91e-09 | 1 |
mammary gland epithelial cell | 2.46e-09 | 4 |
epidermal cell | 9.24e-09 | 9 |
ecto-epithelial cell | 1.97e-08 | 34 |
amnion mesenchymal stem cell | 1.50e-07 | 5 |
keratinocyte | 1.66e-07 | 5 |
epithelial cell of alimentary canal | 6.42e-07 | 20 |
Ontology term | p-value | n |
---|---|---|
jaw skeleton | 5.69e-20 | 4 |
splanchnocranium | 5.69e-20 | 4 |
primary subdivision of cranial skeletal system | 4.25e-16 | 5 |
extraembryonic membrane | 6.25e-15 | 14 |
membranous layer | 6.25e-15 | 14 |
protuberance | 1.65e-13 | 6 |
pharyngeal arch | 1.65e-13 | 6 |
embryonic head | 1.65e-13 | 6 |
gingival epithelium | 1.71e-12 | 3 |
egg chorion | 1.71e-12 | 3 |
chorion | 1.46e-11 | 7 |
mouth mucosa | 1.42e-10 | 13 |
mammary gland | 2.46e-09 | 4 |
mammary bud | 2.46e-09 | 4 |
mammary ridge | 2.46e-09 | 4 |
mammary placode | 2.46e-09 | 4 |
organ component layer | 5.31e-09 | 66 |
extraembryonic structure | 1.21e-08 | 24 |
surface structure | 1.84e-08 | 99 |
cranial skeletal system | 1.37e-07 | 11 |
mucosa | 6.42e-07 | 20 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.