FFCP PHASE1:Hg19::chr17:80709720..80709787,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=6904|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=11581|TSSclassifier=S|UniProt=Q9BTW9,A6NE57|association_with_transcript=-152bp_to_ENST00000355528,NM_005993,uc002kfx.1,uc002kfy.1,uc002kfz.2_5end|description=CAGE_peak_2_at_TBCD_5end|id=chr17:80709720..80709787,+|ontology_enrichment_celltype=CL:0000066!1.24e-13!254;CL:0002321!4.58e-10!248;CL:0000220!2.05e-09!246;CL:0000221!1.18e-07!71;CL:0000133!1.81e-07!59;CL:1000497!3.97e-07!18;CL:0002518!3.97e-07!18;CL:1000449!7.60e-07!16;CL:0000333!8.49e-07!41|ontology_enrichment_celltype_v019=CL:1000449;1.60e-08;15!CL:1000497;6.69e-08;17!CL:0002518;6.69e-08;17|ontology_enrichment_celltype_v019_2=CL:0000066,2.51e-13,253;CL:0000221,6.68e-09,72;CL:1000449,7.26e-09,15;CL:0000133,1.46e-08,59;CL:1000497,1.88e-08,17;CL:0002518,1.88e-08,17;CL:0002321,3.80e-08,250;CL:0000333,1.96e-07,41;CL:0002681,8.66e-07,12;CL:0002584,8.66e-07,12|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:162!1.02e-11!235;DOID:14566!2.40e-11!239;DOID:0050687!3.69e-08!143|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=DOID:162,2.37e-10,235;DOID:14566,5.08e-10,239;DOID:0050687,1.50e-07,143|ontology_enrichment_uberon=UBERON:0002113!9.22e-08!27;UBERON:0003918!9.22e-08!27;UBERON:0005095!9.22e-08!27;UBERON:0007687!9.22e-08!27;UBERON:0000475!2.07e-07!365;UBERON:0000489!2.90e-07!32;UBERON:0009569!5.34e-07!113;UBERON:0000119!5.82e-07!312;UBERON:0004211!7.60e-07!16;UBERON:0001285!7.60e-07!16;UBERON:0007684!7.60e-07!16;UBERON:0003220!7.60e-07!16;UBERON:0004208!7.60e-07!16|ontology_enrichment_uberon_v019=UBERON:0006555;1.60e-08;15!UBERON:0004819;1.60e-08;15!UBERON:0001285;1.60e-08;15!UBERON:0007684;1.60e-08;15!UBERON:0002113;2.89e-08;24!UBERON:0011143;2.89e-08;24!UBERON:0000489;2.33e-07;29!UBERON:0006554;4.00e-07;30!UBERON:0001008;4.00e-07;30|ontology_enrichment_uberon_v019_2=UBERON:0004211,7.26e-09,15;UBERON:0009773,7.26e-09,15;UBERON:0001231,7.26e-09,15;UBERON:0001285,7.26e-09,15;UBERON:0007684,7.26e-09,15;UBERON:0004208,7.26e-09,15;UBERON:0006555,5.48e-08,16;UBERON:0004819,5.48e-08,16;UBERON:0002113,1.55e-07,26;UBERON:0003918,1.55e-07,26;UBERON:0011143,1.55e-07,26;UBERON:0005095,1.55e-07,26;UBERON:0007687,1.55e-07,26;UBERON:0000489,6.32e-07,31;UBERON:0001225,8.66e-07,12;UBERON:0008987,8.66e-07,12|phase1_expression=0.54503513781167,0.428201047781966,0.281908808191942,2.00146596706261,0.446961094427288,0,0,1.89515962028049,1.30592814099919,1.22866968250754,2.09340350391728,1.31064823278103,3.4289707169699,0.618831764800233,0.662794751455832,1.34465029290355,0.602694528023977,0,0,2.33930010345897,0.612002073732759,3.44800193625897,1.71741592278634,3.14811177667634,3.64073654824928,0.764134057479513,0.328402357799783,0.472264687882075,0,0,0,2.75826367343678,0.90361775633475,0.739508020333575,1.39440961044543,3.9807385096478,0.293600439334847,0,0,0.651032612147555,0.447830948479849,0,0,0,0,0.242584061187816,0.232429036905685,0.411167888021826,0,0,0.256160706529101,0,0.344745680736619,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0.211255286311942,0.637812899895131,0,0.112328631146495,0,0.16072558669708,0,0,0.182664153764634,0,0,0,0,0,0,0,0,0,0,0,0,0,0.526768169550154,0,0,0,0.501559486172034,0.651844533267181,0,0,0,0,0,0,0.128091319725675,0.260118695119756,0.657751618414705,0,0,0.296573126324121,0.267540828089713,1.04535523804977,0.566546713487831,0.383220493601921,0,0,0,0,0,0,0,0,0,0,0.403213486449465,0.534880391567015,0.289648807765598,0,1.34140171940727,0.639312809217652,1.0843174571537,0.50133791063589,0.144846518960824,0.795285947051099,0,1.41802225746102,1.55210578223795,2.19586964232815,0.72038491523742,3.64295288292542,2.22470665670658,0.324547393654683,1.39303789839414,0.664789802594326,0.715471872916026,0,0.371457501329565,0.596287222100115,0.860234595106124,0.347140501607594,0,0.838998872419812,1.37559020970034,1.04497483268405,0,0.71153252537342,0,0,0,0.488124115096339,1.10298924103761,0,0.982297011124877,0.898117490504679,1.46394924628319,1.53316637465883,0.949265659568129,0.916008719652036,0,0,1.74437620857014,0.993943903390637,0.506522046658319,1.58891016975863,0.573673241497627,1.41867352879343,1.12135520028461,0,0.49333509683432,0.933633106199299,0.808264032418128,1.79808093424805,0.605429710579726,1.72852777344,0.70296429550139,0.936480230490962,1.1409436430889,2.09228152772521,0.587172493218824,1.45685649931318,0.842704840213491,1.22492502752936,1.35117749042945,0.516628905878827,1.18800285728205,1.23633464639278,0.910161361938026,3.59309070908119,0.505008341862199,1.00094815897571,0.277064115484183,0,0,0.150238058906597,0.453728732640084,1.25572744982203,0.213557388818567,0.635795703478686,1.80054657650641,0.103052529238439,2.06112432036503,1.48893485065272,2.86919764810153,0.876933046450788,1.51460264546469,0.460249493211497,0.161646056818812,0.710019185033229,0.302256294682921,0.67824236924195,0.57978255948989,1.09098448236334,1.43402297694502,8.90408054746046,7.1566074893602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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=6904 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11581 | |||
|TSSclassifier=S | |||
|UniProt=Q9BTW9,A6NE57 | |||
|association_with_transcript=-152bp_to_ENST00000355528,NM_005993,uc002kfx.1,uc002kfy.1,uc002kfz.2_5end | |||
|description=CAGE_peak_2_at_TBCD_5end | |||
|id=chr17:80709720..80709787,+ | |||
|ontology_enrichment_celltype=CL:0000066!1.24e-13!254;CL:0002321!4.58e-10!248;CL:0000220!2.05e-09!246;CL:0000221!1.18e-07!71;CL:0000133!1.81e-07!59;CL:1000497!3.97e-07!18;CL:0002518!3.97e-07!18;CL:1000449!7.60e-07!16;CL:0000333!8.49e-07!41 | |||
|ontology_enrichment_celltype_v019=CL:1000449;1.60e-08;15!CL:1000497;6.69e-08;17!CL:0002518;6.69e-08;17 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,2.51e-13,253;CL:0000221,6.68e-09,72;CL:1000449,7.26e-09,15;CL:0000133,1.46e-08,59;CL:1000497,1.88e-08,17;CL:0002518,1.88e-08,17;CL:0002321,3.80e-08,250;CL:0000333,1.96e-07,41;CL:0002681,8.66e-07,12;CL:0002584,8.66e-07,12 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!1.02e-11!235;DOID:14566!2.40e-11!239;DOID:0050687!3.69e-08!143 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:162,2.37e-10,235;DOID:14566,5.08e-10,239;DOID:0050687,1.50e-07,143 | |||
|ontology_enrichment_uberon=UBERON:0002113!9.22e-08!27;UBERON:0003918!9.22e-08!27;UBERON:0005095!9.22e-08!27;UBERON:0007687!9.22e-08!27;UBERON:0000475!2.07e-07!365;UBERON:0000489!2.90e-07!32;UBERON:0009569!5.34e-07!113;UBERON:0000119!5.82e-07!312;UBERON:0004211!7.60e-07!16;UBERON:0001285!7.60e-07!16;UBERON:0007684!7.60e-07!16;UBERON:0003220!7.60e-07!16;UBERON:0004208!7.60e-07!16 | |||
|ontology_enrichment_uberon_v019=UBERON:0006555;1.60e-08;15!UBERON:0004819;1.60e-08;15!UBERON:0001285;1.60e-08;15!UBERON:0007684;1.60e-08;15!UBERON:0002113;2.89e-08;24!UBERON:0011143;2.89e-08;24!UBERON:0000489;2.33e-07;29!UBERON:0006554;4.00e-07;30!UBERON:0001008;4.00e-07;30 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004211,7.26e-09,15;UBERON:0009773,7.26e-09,15;UBERON:0001231,7.26e-09,15;UBERON:0001285,7.26e-09,15;UBERON:0007684,7.26e-09,15;UBERON:0004208,7.26e-09,15;UBERON:0006555,5.48e-08,16;UBERON:0004819,5.48e-08,16;UBERON:0002113,1.55e-07,26;UBERON:0003918,1.55e-07,26;UBERON:0011143,1.55e-07,26;UBERON:0005095,1.55e-07,26;UBERON:0007687,1.55e-07,26;UBERON:0000489,6.32e-07,31;UBERON:0001225,8.66e-07,12;UBERON:0008987,8.66e-07,12 | |||
|phase1_expression=0.54503513781167,0.428201047781966,0.281908808191942,2.00146596706261,0.446961094427288,0,0,1.89515962028049,1.30592814099919,1.22866968250754,2.09340350391728,1.31064823278103,3.4289707169699,0.618831764800233,0.662794751455832,1.34465029290355,0.602694528023977,0,0,2.33930010345897,0.612002073732759,3.44800193625897,1.71741592278634,3.14811177667634,3.64073654824928,0.764134057479513,0.328402357799783,0.472264687882075,0,0,0,2.75826367343678,0.90361775633475,0.739508020333575,1.39440961044543,3.9807385096478,0.293600439334847,0,0,0.651032612147555,0.447830948479849,0,0,0,0,0.242584061187816,0.232429036905685,0.411167888021826,0,0,0.256160706529101,0,0.344745680736619,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0.211255286311942,0.637812899895131,0,0.112328631146495,0,0.16072558669708,0,0,0.182664153764634,0,0,0,0,0,0,0,0,0,0,0,0,0,0.526768169550154,0,0,0,0.501559486172034,0.651844533267181,0,0,0,0,0,0,0.128091319725675,0.260118695119756,0.657751618414705,0,0,0.296573126324121,0.267540828089713,1.04535523804977,0.566546713487831,0.383220493601921,0,0,0,0,0,0,0,0,0,0,0.403213486449465,0.534880391567015,0.289648807765598,0,1.34140171940727,0.639312809217652,1.0843174571537,0.50133791063589,0.144846518960824,0.795285947051099,0,1.41802225746102,1.55210578223795,2.19586964232815,0.72038491523742,3.64295288292542,2.22470665670658,0.324547393654683,1.39303789839414,0.664789802594326,0.715471872916026,0,0.371457501329565,0.596287222100115,0.860234595106124,0.347140501607594,0,0.838998872419812,1.37559020970034,1.04497483268405,0,0.71153252537342,0,0,0,0.488124115096339,1.10298924103761,0,0.982297011124877,0.898117490504679,1.46394924628319,1.53316637465883,0.949265659568129,0.916008719652036,0,0,1.74437620857014,0.993943903390637,0.506522046658319,1.58891016975863,0.573673241497627,1.41867352879343,1.12135520028461,0,0.49333509683432,0.933633106199299,0.808264032418128,1.79808093424805,0.605429710579726,1.72852777344,0.70296429550139,0.936480230490962,1.1409436430889,2.09228152772521,0.587172493218824,1.45685649931318,0.842704840213491,1.22492502752936,1.35117749042945,0.516628905878827,1.18800285728205,1.23633464639278,0.910161361938026,3.59309070908119,0.505008341862199,1.00094815897571,0.277064115484183,0,0,0.150238058906597,0.453728732640084,1.25572744982203,0.213557388818567,0.635795703478686,1.80054657650641,0.103052529238439,2.06112432036503,1.48893485065272,2.86919764810153,0.876933046450788,1.51460264546469,0.460249493211497,0.161646056818812,0.710019185033229,0.302256294682921,0.67824236924195,0.57978255948989,1.09098448236334,1.43402297694502,8.90408054746046,7.1566074893602,6.15827897208447,4.14644220061482,6.81266297364197,5.47466038613745,0,1.92972281457866,1.38134921352481,0.928735856063958,0,1.77460200059766,1.51726221070292,1.44606617930089,1.43382164552112,2.17879444092406,2.37270619111097,0.539325232640658,0.588664395376038,1.15424147083917,0.738155454624648,2.80483547606892,2.4694440679884,1.47008711385542,0,2.94848165003288,0.590789906681404,0.441463099414651,2.21379189377604,1.3725424823882,1.86575485194663,2.24803506515239,1.80952150340936,1.11106134190236,0,4.15973914111831,0,1.62302566965108,1.40890433082986,0.288732895522148,0.925971025153221,0.761016608938393,3.95102198979638,4.29243081047436,0.246217006087397,0.936017060556951,0.743155811443641,0,0.503946384596579,1.13420077793909,0.895585227028483,0.871901815541886,1.53353071666084,0,0.352193736052904,0.207328115540772,0,0.25248486685276,1.39695367442772,1.90994212779139,3.51652341630141,6.84289784090821,0.719792448923265,2.10240140490742,0.571652865261156,1.45770409648969,2.61576041299968,1.1734125731352,0.904902010304444,0,3.381211010224,0.531876233169741,0,0.771622122786426,4.25547396069835,2.1313774321288,0.57191197463259,0,0,0.65147236858747,0.710783897485092,0.791951872933429,0.904318131178758,0,0.599837947092342,0,0,0,0.479249710983165,0,1.42636905040718,0.723906533337896,1.2328579353023,0.537182889719687,0.560425719967636,0.197030760201927,0,0,1.01637849688985,1.30139853857622,2.31986643833309,0.670065061337395,1.27587750330633,0,0,0,0.36807447515742,0.500170521059677,1.08506009479894,1.03985430765404,0,0.315404830067869,0.468565659970853,0.300946099727719,0,1.03473071292505,0,0.553107505625109,0.60818530127658,2.15381273209015,1.71571711905428,0.206768026122887,0,0.533637789017222,0.303127571446259,1.66435439510497,2.11673205330776,0.992431231275107,1.2276957863045,1.12264037773229,1.28139149255701,1.02341449813341,0.482561763430822,2.96836132889982,0.771048469013278,1.42049380250502,1.39616165223476,1.03850885836724,1.62694529843943,1.81289174387433,0.802025881213139,0.184161977871793,0.459257792658427,0.728364672026868,0.917870904715969,3.60959690325929,1.15523005656622,10.1965469992991,4.38417673959782,1.79437769117889,3.4120015221269,1.36074964221213,1.94324324491925,1.54227252690289,3.79325012561394,4.51520796469368,3.56826782263054,0.831076008928724,4.02974558499921,1.75407901316748,1.5686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| |||
|short_description=p2@TBCD | |||
}} |
Revision as of 16:39, 11 September 2013
Short description: | p2@TBCD |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_TBCD_5end |
Coexpression cluster: | NA |
Association with transcript: | -152bp_to_ENST00000355528, NM_005993, uc002kfx.1, uc002kfy.1, uc002kfz.2_5end |
EntrezGene: | TBCD |
HGNC: | 11581 |
UniProt: | Q9BTW9A6NE57 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 2.51e-13 | 253 |
ectodermal cell | 6.68e-09 | 72 |
epithelial cell of nephron | 7.26e-09 | 15 |
neurectodermal cell | 1.46e-08 | 59 |
kidney cell | 1.88e-08 | 17 |
kidney epithelial cell | 1.88e-08 | 17 |
embryonic cell | 3.80e-08 | 250 |
migratory neural crest cell | 1.96e-07 | 41 |
kidney cortical cell | 8.66e-07 | 12 |
renal cortical epithelial cell | 8.66e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
nephron epithelium | 7.26e-09 | 15 |
renal tubule | 7.26e-09 | 15 |
nephron tubule | 7.26e-09 | 15 |
nephron | 7.26e-09 | 15 |
uriniferous tubule | 7.26e-09 | 15 |
nephrogenic mesenchyme | 7.26e-09 | 15 |
excretory tube | 5.48e-08 | 16 |
kidney epithelium | 5.48e-08 | 16 |
kidney | 1.55e-07 | 26 |
kidney mesenchyme | 1.55e-07 | 26 |
upper urinary tract | 1.55e-07 | 26 |
kidney rudiment | 1.55e-07 | 26 |
kidney field | 1.55e-07 | 26 |
cavitated compound organ | 6.32e-07 | 31 |
cortex of kidney | 8.66e-07 | 12 |
renal parenchyma | 8.66e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
cancer | 2.37e-10 | 235 |
disease of cellular proliferation | 5.08e-10 | 239 |
cell type cancer | 1.50e-07 | 143 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.