FFCP PHASE1:Hg19::chr15:45689453..45689466,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=2628|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=4175|TSSclassifier=S|UniProt=|association_with_transcript=0bp_to_ENST00000560538_5end|coexpression_cluster_id=C25|description=CAGE_peak_11_at_GATM_5end|id=chr15:45689453..45689466,-|ontology_enrichment_celltype=CL:0000181!6.94e-07!12;CL:0000417!6.94e-07!12;CL:0000668!6.94e-07!12;CL:0000414!6.94e-07!12;CL:0000412!6.94e-07!12;CL:0000182!6.94e-07!12|ontology_enrichment_celltype_v019=CL:0002563;1.63e-09;4|ontology_enrichment_celltype_v019_2=CL:0002563,1.70e-09,4|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000160!2.76e-23!27;UBERON:0005409!4.18e-18!35;UBERON:0002108!1.14e-11!14;UBERON:0004921!1.05e-10!129;UBERON:0004185!1.05e-10!129;UBERON:0002107!4.41e-09!19;UBERON:0006925!4.41e-09!19;UBERON:0008836!4.41e-09!19;UBERON:0001155!4.80e-09!9;UBERON:0001007!8.24e-09!155;UBERON:0001555!8.24e-09!155;UBERON:0007026!8.24e-09!155;UBERON:0004119!5.00e-08!169;UBERON:0000925!5.00e-08!169;UBERON:0006595!5.00e-08!169;UBERON:0008835!6.38e-08!22;UBERON:0003894!6.38e-08!22;UBERON:0009854!1.33e-07!23;UBERON:0000059!1.46e-07!11;UBERON:0007499!4.90e-07!25;UBERON:0009497!4.90e-07!25;UBERON:0000015!4.90e-07!25;UBERON:0002423!4.90e-07!25;UBERON:0006235!4.90e-07!25;UBERON:0004161!4.90e-07!25;UBERON:0005057!8.71e-07!26;UBERON:0009856!8.71e-07!26|ontology_enrichment_uberon_v019=UBERON:0000160;9.77e-66;17!UBERON:0002108;6.03e-60;4!UBERON:0005409;1.28e-51;22!UBERON:0004921;1.25e-31;33!UBERON:0001155;1.36e-15;9!UBERON:0001555;1.78e-13;54!UBERON:0000059;5.93e-13;11!UBERON:0002114;2.31e-12;2!UBERON:0001242;1.63e-09;4!UBERON:0001262;1.63e-09;4!UBERON:0004786;1.63e-09;4!UBERON:0004808;1.63e-09;4!UBERON:0001277;1.63e-09;4!UBERON:0001007;1.73e-09;81|ontology_enrichment_uberon_v019_2=UBERON:0000160,9.77e-66,17;UBERON:0002108,6.03e-60,4;UBERON:0005409,9.44e-46,25;UBERON:0001155,1.31e-15,9;UBERON:0000059,5.76e-13,11;UBERON:0002114,2.31e-12,2;UBERON:0004921,2.09e-10,118;UBERON:0001242,1.70e-09,4;UBERON:0001262,1.70e-09,4;UBERON:0004786,1.70e-09,4;UBERON:0004808,1.70e-09,4;UBERON:0001277,1.70e-09,4;UBERON:0001007,1.51e-08,145;UBERON:0001555,1.51e-08,145;UBERON:0007026,1.51e-08,145;UBERON:0004119,8.84e-08,160;UBERON:0000925,8.84e-08,160;UBERON:0006595,8.84e-08,160|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.10689594688802,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18714054040822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.65372693510018,1.83309043480088,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157566364614447,0,0.13480708770837,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146552233678082,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.9489382851183,5.24542945209498,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.2322147241232,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p11@GATM}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=2628 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4175 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000560538_5end | |||
|coexpression_cluster_id=C25 | |||
|description=CAGE_peak_11_at_GATM_5end | |||
|id=chr15:45689453..45689466,- | |||
|ontology_enrichment_celltype=CL:0000181!6.94e-07!12;CL:0000417!6.94e-07!12;CL:0000668!6.94e-07!12;CL:0000414!6.94e-07!12;CL:0000412!6.94e-07!12;CL:0000182!6.94e-07!12 | |||
|ontology_enrichment_celltype_v019=CL:0002563;1.63e-09;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0002563,1.70e-09,4 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000160!2.76e-23!27;UBERON:0005409!4.18e-18!35;UBERON:0002108!1.14e-11!14;UBERON:0004921!1.05e-10!129;UBERON:0004185!1.05e-10!129;UBERON:0002107!4.41e-09!19;UBERON:0006925!4.41e-09!19;UBERON:0008836!4.41e-09!19;UBERON:0001155!4.80e-09!9;UBERON:0001007!8.24e-09!155;UBERON:0001555!8.24e-09!155;UBERON:0007026!8.24e-09!155;UBERON:0004119!5.00e-08!169;UBERON:0000925!5.00e-08!169;UBERON:0006595!5.00e-08!169;UBERON:0008835!6.38e-08!22;UBERON:0003894!6.38e-08!22;UBERON:0009854!1.33e-07!23;UBERON:0000059!1.46e-07!11;UBERON:0007499!4.90e-07!25;UBERON:0009497!4.90e-07!25;UBERON:0000015!4.90e-07!25;UBERON:0002423!4.90e-07!25;UBERON:0006235!4.90e-07!25;UBERON:0004161!4.90e-07!25;UBERON:0005057!8.71e-07!26;UBERON:0009856!8.71e-07!26 | |||
|ontology_enrichment_uberon_v019=UBERON:0000160;9.77e-66;17!UBERON:0002108;6.03e-60;4!UBERON:0005409;1.28e-51;22!UBERON:0004921;1.25e-31;33!UBERON:0001155;1.36e-15;9!UBERON:0001555;1.78e-13;54!UBERON:0000059;5.93e-13;11!UBERON:0002114;2.31e-12;2!UBERON:0001242;1.63e-09;4!UBERON:0001262;1.63e-09;4!UBERON:0004786;1.63e-09;4!UBERON:0004808;1.63e-09;4!UBERON:0001277;1.63e-09;4!UBERON:0001007;1.73e-09;81 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,9.77e-66,17;UBERON:0002108,6.03e-60,4;UBERON:0005409,9.44e-46,25;UBERON:0001155,1.31e-15,9;UBERON:0000059,5.76e-13,11;UBERON:0002114,2.31e-12,2;UBERON:0004921,2.09e-10,118;UBERON:0001242,1.70e-09,4;UBERON:0001262,1.70e-09,4;UBERON:0004786,1.70e-09,4;UBERON:0004808,1.70e-09,4;UBERON:0001277,1.70e-09,4;UBERON:0001007,1.51e-08,145;UBERON:0001555,1.51e-08,145;UBERON:0007026,1.51e-08,145;UBERON:0004119,8.84e-08,160;UBERON:0000925,8.84e-08,160;UBERON:0006595,8.84e-08,160 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.10689594688802,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18714054040822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.65372693510018,1.83309043480088,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157566364614447,0,0.13480708770837,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146552233678082,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.9489382851183,5.24542945209498,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.2322147241232,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p11@GATM | |||
}} |
Revision as of 07:10, 11 September 2013
Short description: | p11@GATM |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_11_at_GATM_5end |
Coexpression cluster: | C25_small_colon_temporal_duodenum_liver_Hepatocyte_gall |
Association with transcript: | 0bp_to_ENST00000560538_5end |
EntrezGene: | GATM |
HGNC: | 4175 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 1.70e-09 | 4 |
Ontology term | p-value | n |
---|---|---|
intestine | 9.77e-66 | 17 |
small intestine | 6.03e-60 | 4 |
gastrointestinal system | 9.44e-46 | 25 |
colon | 1.31e-15 | 9 |
large intestine | 5.76e-13 | 11 |
duodenum | 2.31e-12 | 2 |
subdivision of digestive tract | 2.09e-10 | 118 |
intestinal mucosa | 1.70e-09 | 4 |
wall of intestine | 1.70e-09 | 4 |
gastrointestinal system mucosa | 1.70e-09 | 4 |
gastrointestinal system epithelium | 1.70e-09 | 4 |
intestinal epithelium | 1.70e-09 | 4 |
digestive system | 1.51e-08 | 145 |
digestive tract | 1.51e-08 | 145 |
primitive gut | 1.51e-08 | 145 |
endoderm-derived structure | 8.84e-08 | 160 |
endoderm | 8.84e-08 | 160 |
presumptive endoderm | 8.84e-08 | 160 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.