FFCP PHASE1:Hg19::chr12:52301235..52301246,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=94|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=175|TSSclassifier=S|UniProt=P37023|association_with_transcript=33bp_to_ENST00000267008,ENST00000388922,NM_000020,uc001rzj.2_5end|coexpression_cluster_id=C289|description=CAGE_peak_13_at_ACVRL1_5end|id=chr12:52301235..52301246,+|ontology_enrichment_celltype=CL:0002139!6.15e-27!24;CL:0000115!1.34e-25!35;CL:0002078!9.39e-23!44;CL:0000071!7.85e-17!18;CL:0002546!7.85e-17!18;CL:0000213!8.99e-16!57;CL:0000215!8.99e-16!57;CL:0005020!1.82e-12!6;CL:0002138!1.82e-12!6;CL:0005022!1.82e-12!6;CL:0000222!1.44e-11!119;CL:1000413!7.23e-11!9;CL:0002544!5.78e-09!6;CL:0002543!1.79e-08!6;CL:0002541!2.88e-07!3|ontology_enrichment_celltype_v019=CL:0002139;1.24e-20;24!CL:0000115;1.57e-20;36!CL:0002138;3.56e-16;6!CL:0002541;3.46e-15;3!CL:0002078;1.12e-12;45!CL:0002591;4.06e-12;1!CL:0000213;1.70e-10;58!CL:0000215;1.70e-10;58!CL:0000071;1.43e-09;18!CL:0002188;2.91e-09;5!CL:0002544;5.17e-08;6!CL:0002543;7.32e-08;6!CL:1000746;7.41e-07;7!CL:1000612;7.41e-07;7!CL:0002545;9.96e-07;2|ontology_enrichment_celltype_v019_2=CL:0000115,2.96e-22,36;CL:0002139,1.20e-20,24;CL:0002078,1.38e-17,45;CL:0005020,7.36e-16,6;CL:0002138,7.36e-16,6;CL:0005022,7.36e-16,6;CL:0002541,3.00e-15,3;CL:0000213,2.15e-13,58;CL:0000215,2.15e-13,58;CL:0002591,4.53e-12,1;CL:0000071,1.02e-09,18;CL:0002546,1.02e-09,18;CL:0002188,3.04e-09,5;CL:0002544,4.34e-08,6;CL:0002543,5.17e-08,6;CL:0000222,3.01e-07,121;CL:1000746,7.63e-07,7;CL:1000612,7.63e-07,7;CL:0002545,9.96e-07,2|ontology_enrichment_development_v019=CL:0005022;3.56e-16;6!UBERON:0003124;2.93e-12;1!UBERON:0000358;4.06e-12;1!CL:0002546;1.43e-09;18|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001986!7.85e-17!18;UBERON:0004638!7.85e-17!18;UBERON:0004852!7.85e-17!18;UBERON:0000055!3.99e-16!69;UBERON:0002049!2.26e-15!79;UBERON:0007798!2.26e-15!79;UBERON:0006914!4.66e-15!25;UBERON:0000487!4.27e-13!22;UBERON:0004535!1.22e-12!110;UBERON:0001473!2.65e-12!8;UBERON:0004536!2.65e-12!8;UBERON:0006558!2.65e-12!8;UBERON:0001009!4.82e-12!113;UBERON:0002465!6.15e-12!10;UBERON:0004872!5.08e-11!84;UBERON:0003915!7.23e-11!9;UBERON:0004700!7.23e-11!9;UBERON:0001917!7.23e-11!9;UBERON:0001981!7.50e-10!60;UBERON:0007500!7.50e-10!60;UBERON:0004537!7.50e-10!60;UBERON:0006965!7.50e-10!60;UBERON:0003914!8.68e-08!118;UBERON:0001638!1.35e-07!9;UBERON:0003920!1.35e-07!9;UBERON:0004582!1.35e-07!9;UBERON:0000476!2.88e-07!3;UBERON:0000920!2.88e-07!3;UBERON:0000477!3.95e-07!286|ontology_enrichment_uberon_v019=UBERON:0003124;3.46e-15;3!UBERON:0000920;3.46e-15;3!UBERON:0001473;2.78e-12;8!UBERON:0004536;2.78e-12;8!UBERON:0006558;2.78e-12;8!UBERON:0000478;5.02e-11;24!UBERON:0005631;4.24e-10;10!UBERON:0000158;4.24e-10;10!UBERON:0002465;6.15e-10;10!UBERON:0004638;1.43e-09;18!UBERON:0001986;1.43e-09;18!UBERON:0004852;1.43e-09;18!UBERON:0000487;7.30e-08;22!UBERON:0006914;6.15e-07;25!UBERON:0000055;6.59e-07;65!UBERON:0000074;7.41e-07;7!UBERON:0001229;7.41e-07;7!UBERON:0005800;9.96e-07;2!UBERON:0001515;9.96e-07;2|ontology_enrichment_uberon_v019_2=UBERON:0000920,3.00e-15,3;UBERON:0003124,1.93e-14,7;UBERON:0005631,2.00e-12,14;UBERON:0000158,2.00e-12,14;UBERON:0001473,4.77e-12,8;UBERON:0004536,4.77e-12,8;UBERON:0006558,4.77e-12,8;UBERON:0000478,4.92e-11,24;UBERON:0002465,9.46e-10,10;UBERON:0004638,1.02e-09,18;UBERON:0001986,1.02e-09,18;UBERON:0004852,1.02e-09,18;UBERON:0000055,6.14e-09,68;UBERON:0000487,5.55e-08,22;UBERON:0002049,1.13e-07,78;UBERON:0007798,1.13e-07,78;UBERON:0006914,4.84e-07,25;UBERON:0010532,7.63e-07,7;UBERON:0000074,7.63e-07,7;UBERON:0001229,7.63e-07,7;UBERON:0001230,7.63e-07,7;UBERON:0003220,7.63e-07,7;UBERON:0005749,7.63e-07,7;UBERON:0004199,7.63e-07,7;UBERON:0004209,7.63e-07,7;UBERON:0004198,7.63e-07,7;UBERON:0005800,9.96e-07,2;UBERON:0001515,9.96e-07,2|phase1_expression=0.363356758541113,0.214100523890983,0.140954404095971,0,0,0,0,0,0.522371256399677,0,0,0,0,0.123766352960047,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0.993812036833525,1.72046919021225,0.694281003215189,0.56530794192401,0.838998872419812,0,0.626984899610432,1.03366703667732,1.06729878806013,1.00416183829401,0.805658634218294,0,0,0,3.24056779152704,0.446498641420399,0.44905874525234,0.225222960966644,0,1.89853131913626,1.64881569537367,0,0,0,0,0.12663051166458,0.132409180813219,0.286836620748814,0,0,0,0,0,0.134710672069688,0,0,0,0,0.936480230490962,0,0.298897361103602,0,0,0,0,0.122834317311768,0,0,0,0.910161361938026,0,0.168336113954066,0,0,0,0,0,0.113432183160021,0,0,0.211931901159562,0.300091096084402,0.103052529238439,0,0,0.168776332241266,0,0.504867548488229,0,0,0.355009592516614,0,0.169560592310488,0,0,0,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=94 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=175 | |||
|TSSclassifier=S | |||
|UniProt=P37023 | |||
|association_with_transcript=33bp_to_ENST00000267008,ENST00000388922,NM_000020,uc001rzj.2_5end | |||
|coexpression_cluster_id=C289 | |||
|description=CAGE_peak_13_at_ACVRL1_5end | |||
|id=chr12:52301235..52301246,+ | |||
|ontology_enrichment_celltype=CL:0002139!6.15e-27!24;CL:0000115!1.34e-25!35;CL:0002078!9.39e-23!44;CL:0000071!7.85e-17!18;CL:0002546!7.85e-17!18;CL:0000213!8.99e-16!57;CL:0000215!8.99e-16!57;CL:0005020!1.82e-12!6;CL:0002138!1.82e-12!6;CL:0005022!1.82e-12!6;CL:0000222!1.44e-11!119;CL:1000413!7.23e-11!9;CL:0002544!5.78e-09!6;CL:0002543!1.79e-08!6;CL:0002541!2.88e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0002139;1.24e-20;24!CL:0000115;1.57e-20;36!CL:0002138;3.56e-16;6!CL:0002541;3.46e-15;3!CL:0002078;1.12e-12;45!CL:0002591;4.06e-12;1!CL:0000213;1.70e-10;58!CL:0000215;1.70e-10;58!CL:0000071;1.43e-09;18!CL:0002188;2.91e-09;5!CL:0002544;5.17e-08;6!CL:0002543;7.32e-08;6!CL:1000746;7.41e-07;7!CL:1000612;7.41e-07;7!CL:0002545;9.96e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000115,2.96e-22,36;CL:0002139,1.20e-20,24;CL:0002078,1.38e-17,45;CL:0005020,7.36e-16,6;CL:0002138,7.36e-16,6;CL:0005022,7.36e-16,6;CL:0002541,3.00e-15,3;CL:0000213,2.15e-13,58;CL:0000215,2.15e-13,58;CL:0002591,4.53e-12,1;CL:0000071,1.02e-09,18;CL:0002546,1.02e-09,18;CL:0002188,3.04e-09,5;CL:0002544,4.34e-08,6;CL:0002543,5.17e-08,6;CL:0000222,3.01e-07,121;CL:1000746,7.63e-07,7;CL:1000612,7.63e-07,7;CL:0002545,9.96e-07,2 | |||
|ontology_enrichment_development_v019=CL:0005022;3.56e-16;6!UBERON:0003124;2.93e-12;1!UBERON:0000358;4.06e-12;1!CL:0002546;1.43e-09;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001986!7.85e-17!18;UBERON:0004638!7.85e-17!18;UBERON:0004852!7.85e-17!18;UBERON:0000055!3.99e-16!69;UBERON:0002049!2.26e-15!79;UBERON:0007798!2.26e-15!79;UBERON:0006914!4.66e-15!25;UBERON:0000487!4.27e-13!22;UBERON:0004535!1.22e-12!110;UBERON:0001473!2.65e-12!8;UBERON:0004536!2.65e-12!8;UBERON:0006558!2.65e-12!8;UBERON:0001009!4.82e-12!113;UBERON:0002465!6.15e-12!10;UBERON:0004872!5.08e-11!84;UBERON:0003915!7.23e-11!9;UBERON:0004700!7.23e-11!9;UBERON:0001917!7.23e-11!9;UBERON:0001981!7.50e-10!60;UBERON:0007500!7.50e-10!60;UBERON:0004537!7.50e-10!60;UBERON:0006965!7.50e-10!60;UBERON:0003914!8.68e-08!118;UBERON:0001638!1.35e-07!9;UBERON:0003920!1.35e-07!9;UBERON:0004582!1.35e-07!9;UBERON:0000476!2.88e-07!3;UBERON:0000920!2.88e-07!3;UBERON:0000477!3.95e-07!286 | |||
|ontology_enrichment_uberon_v019=UBERON:0003124;3.46e-15;3!UBERON:0000920;3.46e-15;3!UBERON:0001473;2.78e-12;8!UBERON:0004536;2.78e-12;8!UBERON:0006558;2.78e-12;8!UBERON:0000478;5.02e-11;24!UBERON:0005631;4.24e-10;10!UBERON:0000158;4.24e-10;10!UBERON:0002465;6.15e-10;10!UBERON:0004638;1.43e-09;18!UBERON:0001986;1.43e-09;18!UBERON:0004852;1.43e-09;18!UBERON:0000487;7.30e-08;22!UBERON:0006914;6.15e-07;25!UBERON:0000055;6.59e-07;65!UBERON:0000074;7.41e-07;7!UBERON:0001229;7.41e-07;7!UBERON:0005800;9.96e-07;2!UBERON:0001515;9.96e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000920,3.00e-15,3;UBERON:0003124,1.93e-14,7;UBERON:0005631,2.00e-12,14;UBERON:0000158,2.00e-12,14;UBERON:0001473,4.77e-12,8;UBERON:0004536,4.77e-12,8;UBERON:0006558,4.77e-12,8;UBERON:0000478,4.92e-11,24;UBERON:0002465,9.46e-10,10;UBERON:0004638,1.02e-09,18;UBERON:0001986,1.02e-09,18;UBERON:0004852,1.02e-09,18;UBERON:0000055,6.14e-09,68;UBERON:0000487,5.55e-08,22;UBERON:0002049,1.13e-07,78;UBERON:0007798,1.13e-07,78;UBERON:0006914,4.84e-07,25;UBERON:0010532,7.63e-07,7;UBERON:0000074,7.63e-07,7;UBERON:0001229,7.63e-07,7;UBERON:0001230,7.63e-07,7;UBERON:0003220,7.63e-07,7;UBERON:0005749,7.63e-07,7;UBERON:0004199,7.63e-07,7;UBERON:0004209,7.63e-07,7;UBERON:0004198,7.63e-07,7;UBERON:0005800,9.96e-07,2;UBERON:0001515,9.96e-07,2 | |||
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|short_description=p13@ACVRL1 | |||
}} |
Revision as of 23:04, 10 September 2013
Short description: | p13@ACVRL1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_13_at_ACVRL1_5end |
Coexpression cluster: | C289_chorionic_skeletal_heart_Mast_amniotic_granulosa_left |
Association with transcript: | 33bp_to_ENST00000267008, ENST00000388922, NM_000020, uc001rzj.2_5end |
EntrezGene: | ACVRL1 |
HGNC: | 175 |
UniProt: | P37023 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell | 2.96e-22 | 36 |
endothelial cell of vascular tree | 1.20e-20 | 24 |
meso-epithelial cell | 1.38e-17 | 45 |
lymphangioblast | 7.36e-16 | 6 |
endothelial cell of lymphatic vessel | 7.36e-16 | 6 |
vascular lymphangioblast | 7.36e-16 | 6 |
chorionic membrane mesenchymal stem cell | 3.00e-15 | 3 |
lining cell | 2.15e-13 | 58 |
barrier cell | 2.15e-13 | 58 |
smooth muscle cell of the pulmonary artery | 4.53e-12 | 1 |
blood vessel endothelial cell | 1.02e-09 | 18 |
embryonic blood vessel endothelial progenitor cell | 1.02e-09 | 18 |
glomerular endothelial cell | 3.04e-09 | 5 |
aortic endothelial cell | 4.34e-08 | 6 |
vein endothelial cell | 5.17e-08 | 6 |
mesodermal cell | 3.01e-07 | 121 |
glomerular cell | 7.63e-07 | 7 |
kidney corpuscule cell | 7.63e-07 | 7 |
thoracic aorta endothelial cell | 9.96e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
egg chorion | 3.00e-15 | 3 |
chorion | 1.93e-14 | 7 |
extraembryonic membrane | 2.00e-12 | 14 |
membranous layer | 2.00e-12 | 14 |
lymphatic vessel | 4.77e-12 | 8 |
lymph vasculature | 4.77e-12 | 8 |
lymphatic part of lymphoid system | 4.77e-12 | 8 |
extraembryonic structure | 4.92e-11 | 24 |
lymphoid system | 9.46e-10 | 10 |
blood vessel endothelium | 1.02e-09 | 18 |
endothelium | 1.02e-09 | 18 |
cardiovascular system endothelium | 1.02e-09 | 18 |
vessel | 6.14e-09 | 68 |
simple squamous epithelium | 5.55e-08 | 22 |
vasculature | 1.13e-07 | 78 |
vascular system | 1.13e-07 | 78 |
squamous epithelium | 4.84e-07 | 25 |
primitive nephron | 7.63e-07 | 7 |
renal glomerulus | 7.63e-07 | 7 |
renal corpuscle | 7.63e-07 | 7 |
glomerular capsule | 7.63e-07 | 7 |
metanephric mesenchyme | 7.63e-07 | 7 |
glomerular tuft | 7.63e-07 | 7 |
S-shaped body | 7.63e-07 | 7 |
renal vesicle | 7.63e-07 | 7 |
comma-shaped body | 7.63e-07 | 7 |
segment of aorta | 9.96e-07 | 2 |
thoracic aorta | 9.96e-07 | 2 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.