FFCP PHASE1:Hg19::chr11:66824346..66824359,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=29984|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=670|TSSclassifier=S|UniProt=E9PIG5|association_with_transcript=0bp_to_ENST00000532559_5end|coexpression_cluster_id=C511|description=CAGE_peak_3_at_RHOD_5end|id=chr11:66824346..66824359,+|ontology_enrichment_celltype=CL:0000066!1.35e-30!254;CL:0002076!1.17e-15!43;CL:0000223!1.78e-13!59;CL:0000220!1.10e-12!246;CL:0002321!1.31e-12!248;CL:0002251!8.24e-09!21;CL:0002368!2.72e-07!13;CL:0000548!8.92e-07!679;CL:0000004!8.92e-07!679;CL:0000255!8.92e-07!679|ontology_enrichment_celltype_v019=CL:0002076;5.41e-13;42!CL:0002251;4.27e-10;20!CL:0000349;6.05e-09;19!CL:0002368;1.18e-08;13!CL:0002159;2.12e-07;14|ontology_enrichment_celltype_v019_2=CL:0000066,1.65e-30,253;CL:0002076,2.55e-17,42;CL:0000223,7.40e-14,58;CL:0002251,4.31e-10,20;CL:0002321,1.72e-09,250;CL:0000349,6.45e-09,19;CL:0002368,1.18e-08,13;CL:0000076,9.30e-08,63;CL:0002159,1.46e-07,14|ontology_enrichment_development_v019=CL:0000223;5.12e-08;58|ontology_enrichment_disease=DOID:305!1.71e-08!106|ontology_enrichment_disease_v019=DOID:1749;1.76e-07;14|ontology_enrichment_disease_v019_2=DOID:305,9.55e-08,106;DOID:1749,2.19e-07,14|ontology_enrichment_uberon=UBERON:0004119!1.92e-17!169;UBERON:0000925!1.92e-17!169;UBERON:0006595!1.92e-17!169;UBERON:0003104!5.02e-14!238;UBERON:0009142!5.02e-14!238;UBERON:0000468!1.76e-13!659;UBERON:0001007!7.00e-13!155;UBERON:0001555!7.00e-13!155;UBERON:0007026!7.00e-13!155;UBERON:0000481!1.42e-12!347;UBERON:0002100!3.39e-12!216;UBERON:0000077!8.40e-12!130;UBERON:0000475!2.22e-11!365;UBERON:0001004!4.68e-11!72;UBERON:0000064!1.95e-10!219;UBERON:0005256!2.00e-09!143;UBERON:0004921!3.29e-09!129;UBERON:0004185!3.29e-09!129;UBERON:0000467!3.44e-09!625;UBERON:0000480!5.29e-09!626;UBERON:0001048!6.46e-09!168;UBERON:0001444!8.09e-09!48;UBERON:0009569!1.96e-08!113;UBERON:0005631!2.16e-08!14;UBERON:0000158!2.16e-08!14;UBERON:0000065!2.21e-08!53;UBERON:0000063!3.32e-08!97;UBERON:0003102!3.50e-08!95;UBERON:0000466!4.12e-08!126;UBERON:0000161!6.35e-08!35;UBERON:0004923!8.88e-08!57;UBERON:0000915!1.26e-07!52;UBERON:0001041!1.58e-07!98;UBERON:0000062!3.48e-07!511;UBERON:0000922!3.64e-07!612;UBERON:0005911!3.66e-07!82;UBERON:0000483!4.50e-07!309;UBERON:0000119!4.93e-07!312;UBERON:0000923!5.84e-07!604;UBERON:0005291!5.84e-07!604;UBERON:0006598!5.84e-07!604;UBERON:0002532!5.84e-07!604;UBERON:0002050!5.86e-07!605;UBERON:0005423!5.86e-07!605;UBERON:0000072!5.99e-07!46|ontology_enrichment_uberon_v019=UBERON:0000478;1.56e-07;24!UBERON:0005631;5.93e-07;10!UBERON:0000158;5.93e-07;10|ontology_enrichment_uberon_v019_2=UBERON:0004119,7.50e-15,160;UBERON:0000925,7.50e-15,160;UBERON:0006595,7.50e-15,160;UBERON:0001007,2.64e-10,145;UBERON:0001555,2.64e-10,145;UBERON:0007026,2.64e-10,145;UBERON:0001004,3.77e-10,74;UBERON:0005631,1.09e-09,14;UBERON:0000158,1.09e-09,14;UBERON:0004923,4.65e-09,66;UBERON:0002100,2.05e-08,199;UBERON:0004921,3.48e-08,118;UBERON:0001041,3.79e-08,87;UBERON:0000033,7.25e-08,56;UBERON:0000065,8.00e-08,54;UBERON:0009569,8.37e-08,112;UBERON:0000478,1.65e-07,24;UBERON:0001048,2.06e-07,160;UBERON:0001444,3.15e-07,49;UBERON:0000161,4.48e-07,36;UBERON:0000153,4.76e-07,62;UBERON:0007811,4.76e-07,62;UBERON:0000072,5.29e-07,47|phase1_expression=2.54349730978779,3.42560838225573,1.55049844505568,2.00146596706261,4.91657203870017,4.36169262050184,2.53299878168311,0,0.783556884599516,2.7030733015166,9.76921635161399,6.77168253603534,10.5506791291381,2.84662611808107,6.2965501388304,2.6893005858071,2.41077811209591,0,1.46379839637152,1.10808952269109,3.06001036866379,1.56727360739044,0.286235987131057,0.821246550437305,0.753255837568817,0,0,0,0,0,0,37.696270203636,29.8193859590468,36.2358929963452,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.224723484445085,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.01210257911091,1.02290049474824,3.61439152384566,6.51739283826656,6.80778639115871,5.5670016293577,7.29952305453954,1.32348744029695,2.66075276955077,1.49319135678314,0.458426764241994,38.979595847302,47.460408676407,0,0,0,0,0,0,0,0,1.04142150482278,0.56530794192401,1.25849830862972,0.825354125820202,0,1.03366703667732,0.35576626268671,0.33472061276467,1.61131726843659,3.80136052859256,1.70843440283719,0.367663080345869,1.62028389576352,0.357198913136319,1.12264686313085,1.12611480483322,0,0,0.366403487860815,0,0,37.9401825364005,1.98788780678127,0.633152558322899,0.529636723252875,0,0.354668382198357,1.12135520028461,0,1.72667283892012,0.622422070799533,0.134710672069688,0,0.908144565869588,1.72852777344,0.937285727335186,0.312160076830321,0,0.597794722207204,0.117434498643765,0.323745888736263,0.140450806702248,0.816616685019573,0.737005903870608,1.44656093646072,4.75201142912821,2.96720315134268,0.910161361938026,1.43723628363248,0.168336113954066,0.125118519871964,0.831192346452549,0.877955241761676,2.14541457059314,4.05642759047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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=29984 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=670 | |||
|TSSclassifier=S | |||
|UniProt=E9PIG5 | |||
|association_with_transcript=0bp_to_ENST00000532559_5end | |||
|coexpression_cluster_id=C511 | |||
|description=CAGE_peak_3_at_RHOD_5end | |||
|id=chr11:66824346..66824359,+ | |||
|ontology_enrichment_celltype=CL:0000066!1.35e-30!254;CL:0002076!1.17e-15!43;CL:0000223!1.78e-13!59;CL:0000220!1.10e-12!246;CL:0002321!1.31e-12!248;CL:0002251!8.24e-09!21;CL:0002368!2.72e-07!13;CL:0000548!8.92e-07!679;CL:0000004!8.92e-07!679;CL:0000255!8.92e-07!679 | |||
|ontology_enrichment_celltype_v019=CL:0002076;5.41e-13;42!CL:0002251;4.27e-10;20!CL:0000349;6.05e-09;19!CL:0002368;1.18e-08;13!CL:0002159;2.12e-07;14 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.65e-30,253;CL:0002076,2.55e-17,42;CL:0000223,7.40e-14,58;CL:0002251,4.31e-10,20;CL:0002321,1.72e-09,250;CL:0000349,6.45e-09,19;CL:0002368,1.18e-08,13;CL:0000076,9.30e-08,63;CL:0002159,1.46e-07,14 | |||
|ontology_enrichment_development_v019=CL:0000223;5.12e-08;58 | |||
|ontology_enrichment_disease=DOID:305!1.71e-08!106 | |||
|ontology_enrichment_disease_v019=DOID:1749;1.76e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:305,9.55e-08,106;DOID:1749,2.19e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0004119!1.92e-17!169;UBERON:0000925!1.92e-17!169;UBERON:0006595!1.92e-17!169;UBERON:0003104!5.02e-14!238;UBERON:0009142!5.02e-14!238;UBERON:0000468!1.76e-13!659;UBERON:0001007!7.00e-13!155;UBERON:0001555!7.00e-13!155;UBERON:0007026!7.00e-13!155;UBERON:0000481!1.42e-12!347;UBERON:0002100!3.39e-12!216;UBERON:0000077!8.40e-12!130;UBERON:0000475!2.22e-11!365;UBERON:0001004!4.68e-11!72;UBERON:0000064!1.95e-10!219;UBERON:0005256!2.00e-09!143;UBERON:0004921!3.29e-09!129;UBERON:0004185!3.29e-09!129;UBERON:0000467!3.44e-09!625;UBERON:0000480!5.29e-09!626;UBERON:0001048!6.46e-09!168;UBERON:0001444!8.09e-09!48;UBERON:0009569!1.96e-08!113;UBERON:0005631!2.16e-08!14;UBERON:0000158!2.16e-08!14;UBERON:0000065!2.21e-08!53;UBERON:0000063!3.32e-08!97;UBERON:0003102!3.50e-08!95;UBERON:0000466!4.12e-08!126;UBERON:0000161!6.35e-08!35;UBERON:0004923!8.88e-08!57;UBERON:0000915!1.26e-07!52;UBERON:0001041!1.58e-07!98;UBERON:0000062!3.48e-07!511;UBERON:0000922!3.64e-07!612;UBERON:0005911!3.66e-07!82;UBERON:0000483!4.50e-07!309;UBERON:0000119!4.93e-07!312;UBERON:0000923!5.84e-07!604;UBERON:0005291!5.84e-07!604;UBERON:0006598!5.84e-07!604;UBERON:0002532!5.84e-07!604;UBERON:0002050!5.86e-07!605;UBERON:0005423!5.86e-07!605;UBERON:0000072!5.99e-07!46 | |||
|ontology_enrichment_uberon_v019=UBERON:0000478;1.56e-07;24!UBERON:0005631;5.93e-07;10!UBERON:0000158;5.93e-07;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,7.50e-15,160;UBERON:0000925,7.50e-15,160;UBERON:0006595,7.50e-15,160;UBERON:0001007,2.64e-10,145;UBERON:0001555,2.64e-10,145;UBERON:0007026,2.64e-10,145;UBERON:0001004,3.77e-10,74;UBERON:0005631,1.09e-09,14;UBERON:0000158,1.09e-09,14;UBERON:0004923,4.65e-09,66;UBERON:0002100,2.05e-08,199;UBERON:0004921,3.48e-08,118;UBERON:0001041,3.79e-08,87;UBERON:0000033,7.25e-08,56;UBERON:0000065,8.00e-08,54;UBERON:0009569,8.37e-08,112;UBERON:0000478,1.65e-07,24;UBERON:0001048,2.06e-07,160;UBERON:0001444,3.15e-07,49;UBERON:0000161,4.48e-07,36;UBERON:0000153,4.76e-07,62;UBERON:0007811,4.76e-07,62;UBERON:0000072,5.29e-07,47 | |||
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| |||
|short_description=p3@RHOD | |||
}} |
Revision as of 19:13, 10 September 2013
Short description: | p3@RHOD |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_RHOD_5end |
Coexpression cluster: | C511_Placental_Alveolar_Bronchial_amniotic_Gingival_Corneal_Mammary |
Association with transcript: | 0bp_to_ENST00000532559_5end |
EntrezGene: | RHOD |
HGNC: | 670 |
UniProt: | E9PIG5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.65e-30 | 253 |
endo-epithelial cell | 2.55e-17 | 42 |
endodermal cell | 7.40e-14 | 58 |
epithelial cell of alimentary canal | 4.31e-10 | 20 |
embryonic cell | 1.72e-09 | 250 |
extraembryonic cell | 6.45e-09 | 19 |
respiratory epithelial cell | 1.18e-08 | 13 |
squamous epithelial cell | 9.30e-08 | 63 |
general ecto-epithelial cell | 1.46e-07 | 14 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 7.50e-15 | 160 |
endoderm | 7.50e-15 | 160 |
presumptive endoderm | 7.50e-15 | 160 |
digestive system | 2.64e-10 | 145 |
digestive tract | 2.64e-10 | 145 |
primitive gut | 2.64e-10 | 145 |
respiratory system | 3.77e-10 | 74 |
extraembryonic membrane | 1.09e-09 | 14 |
membranous layer | 1.09e-09 | 14 |
organ component layer | 4.65e-09 | 66 |
trunk | 2.05e-08 | 199 |
subdivision of digestive tract | 3.48e-08 | 118 |
foregut | 3.79e-08 | 87 |
head | 7.25e-08 | 56 |
respiratory tract | 8.00e-08 | 54 |
subdivision of trunk | 8.37e-08 | 112 |
extraembryonic structure | 1.65e-07 | 24 |
primordium | 2.06e-07 | 160 |
subdivision of head | 3.15e-07 | 49 |
orifice | 4.48e-07 | 36 |
anterior region of body | 4.76e-07 | 62 |
craniocervical region | 4.76e-07 | 62 |
segment of respiratory tract | 5.29e-07 | 47 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 9.55e-08 | 106 |
squamous cell carcinoma | 2.19e-07 | 14 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.