FFCP PHASE1:Hg19::chr11:116708330..116708347,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=335|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=600|TSSclassifier=S|UniProt=P02647|association_with_transcript=0bp_to_ENST00000375323,NM_000039,uc001ppv.1_5end|coexpression_cluster_id=C129|description=CAGE_peak_1_at_APOA1_5end|id=chr11:116708330..116708347,-|ontology_enrichment_celltype=CL:0000181!1.72e-08!12;CL:0000417!1.72e-08!12;CL:0000668!1.72e-08!12;CL:0000414!1.72e-08!12;CL:0000412!1.72e-08!12;CL:0000182!1.72e-08!12;CL:1000306!6.94e-08!4;CL:0002547!6.94e-08!4;CL:0002594!1.71e-07!4;CL:0002322!9.78e-07!5|ontology_enrichment_celltype_v019=CL:0000182;1.47e-15;12!CL:0002322;2.68e-07;5|ontology_enrichment_celltype_v019_2=CL:0000182,1.47e-15,12;CL:0002322,2.74e-07,5|ontology_enrichment_development_v019=UBERON:0004161;1.22e-12;11!UBERON:0009497;1.41e-10;13!UBERON:0003104;2.01e-08;31|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:114;8.98e-08;2|ontology_enrichment_disease_v019_2=DOID:114,8.37e-08,2|ontology_enrichment_uberon=UBERON:0007100!1.34e-18!27;UBERON:0003914!2.51e-17!118;UBERON:0000948!2.33e-14!24;UBERON:0005498!2.33e-14!24;UBERON:0004140!2.33e-14!24;UBERON:0009881!2.33e-14!24;UBERON:0004141!2.33e-14!24;UBERON:0003084!2.33e-14!24;UBERON:0007005!2.33e-14!24;UBERON:0004139!2.33e-14!24;UBERON:0004291!2.33e-14!24;UBERON:0005057!8.59e-13!26;UBERON:0004872!1.32e-12!84;UBERON:0002107!4.06e-12!19;UBERON:0006925!4.06e-12!19;UBERON:0008836!4.06e-12!19;UBERON:0000025!7.13e-11!194;UBERON:0001048!3.08e-10!168;UBERON:0003929!3.29e-10!54;UBERON:0009497!4.33e-10!25;UBERON:0000015!4.33e-10!25;UBERON:0002423!4.33e-10!25;UBERON:0006235!4.33e-10!25;UBERON:0004161!4.33e-10!25;UBERON:0008835!4.59e-10!22;UBERON:0003894!4.59e-10!22;UBERON:0002368!1.00e-09!35;UBERON:0009854!1.68e-09!23;UBERON:0003103!3.31e-09!69;UBERON:0001637!1.37e-08!42;UBERON:0003509!1.37e-08!42;UBERON:0004572!1.37e-08!42;UBERON:0007499!1.63e-08!25;UBERON:0001009!3.20e-08!113;UBERON:0001981!3.80e-08!60;UBERON:0007500!3.80e-08!60;UBERON:0004537!3.80e-08!60;UBERON:0006965!3.80e-08!60;UBERON:0009856!4.43e-08!26;UBERON:0000415!6.94e-08!4;UBERON:0007240!6.94e-08!4;UBERON:0005742!6.94e-08!4;UBERON:0005734!6.94e-08!4;UBERON:0004664!6.94e-08!4;UBERON:0004663!6.94e-08!4;UBERON:0000483!8.09e-08!309;UBERON:0000119!1.31e-07!312;UBERON:0004111!1.59e-07!241;UBERON:0002365!1.60e-07!31;UBERON:0002330!1.60e-07!31;UBERON:0001310!1.71e-07!4;UBERON:0004921!2.21e-07!129;UBERON:0004185!2.21e-07!129;UBERON:0000490!2.64e-07!138;UBERON:0004145!8.70e-07!3;UBERON:0003498!9.63e-07!5;UBERON:0005985!9.63e-07!5|ontology_enrichment_uberon_v019=UBERON:0002107;6.18e-23;19!UBERON:0006925;6.18e-23;19!UBERON:0002423;7.75e-17;25!UBERON:0002365;6.94e-13;31!UBERON:0002330;6.94e-13;31!UBERON:0002368;2.63e-11;33!UBERON:0007100;8.43e-10;25!UBERON:0000160;8.79e-10;17!UBERON:0005409;1.37e-09;22!UBERON:0001007;4.09e-08;81!UBERON:0000078;4.29e-08;2!UBERON:0002012;4.29e-08;2!UBERON:0008886;4.29e-08;2!UBERON:0000949;5.40e-08;43!UBERON:0002108;9.46e-08;4|ontology_enrichment_uberon_v019_2=UBERON:0002107,5.93e-23,19;UBERON:0006925,5.93e-23,19;UBERON:0008836,5.93e-23,19;UBERON:0008835,1.74e-19,22;UBERON:0003894,1.74e-19,22;UBERON:0009854,1.57e-18,23;UBERON:0007499,7.51e-17,25;UBERON:0009497,7.51e-17,25;UBERON:0000015,7.51e-17,25;UBERON:0002423,7.51e-17,25;UBERON:0006235,7.51e-17,25;UBERON:0004161,7.51e-17,25;UBERON:0009856,4.15e-16,26;UBERON:0003929,1.49e-14,54;UBERON:0007100,1.35e-13,27;UBERON:0002365,4.07e-13,31;UBERON:0002330,4.07e-13,31;UBERON:0004921,2.07e-11,118;UBERON:0002368,2.41e-11,35;UBERON:0004145,3.43e-11,3;UBERON:0003914,4.07e-11,117;UBERON:0005409,2.09e-10,25;UBERON:0000160,8.79e-10,17;UBERON:0000949,2.64e-08,45;UBERON:0005911,2.66e-08,82;UBERON:0001007,2.69e-08,145;UBERON:0001555,2.69e-08,145;UBERON:0007026,2.69e-08,145;UBERON:0004797,2.72e-08,7;UBERON:0000948,2.91e-08,24;UBERON:0005498,2.91e-08,24;UBERON:0004140,2.91e-08,24;UBERON:0009881,2.91e-08,24;UBERON:0004141,2.91e-08,24;UBERON:0003084,2.91e-08,24;UBERON:0007005,2.91e-08,24;UBERON:0004139,2.91e-08,24;UBERON:0004291,2.91e-08,24;UBERON:0000078,3.77e-08,2;UBERON:0007497,3.77e-08,2;UBERON:0003643,3.77e-08,2;UBERON:0003504,3.77e-08,2;UBERON:0003469,3.77e-08,2;UBERON:0003496,3.77e-08,2;UBERON:0002012,3.77e-08,2;UBERON:0008886,3.77e-08,2;UBERON:0007303,3.77e-08,2;UBERON:0002061,3.77e-08,2;UBERON:0005432,3.77e-08,2;UBERON:0004363,3.77e-08,2;UBERON:0005172,8.36e-08,54;UBERON:0005173,8.36e-08,54;UBERON:0002108,9.46e-08,4;UBERON:0001048,1.52e-07,160;UBERON:0003498,4.69e-07,5;UBERON:0005985,4.69e-07,5;UBERON:0004119,4.87e-07,160;UBERON:0000925,4.87e-07,160;UBERON:0006595,4.87e-07,160;UBERON:0002530,5.32e-07,59;UBERON:0000485,8.20e-07,9;UBERON:0002417,8.93e-07,60;UBERON:0000916,8.93e-07,60|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=335 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=600 | |||
|TSSclassifier=S | |||
|UniProt=P02647 | |||
|association_with_transcript=0bp_to_ENST00000375323,NM_000039,uc001ppv.1_5end | |||
|coexpression_cluster_id=C129 | |||
|description=CAGE_peak_1_at_APOA1_5end | |||
|id=chr11:116708330..116708347,- | |||
|ontology_enrichment_celltype=CL:0000181!1.72e-08!12;CL:0000417!1.72e-08!12;CL:0000668!1.72e-08!12;CL:0000414!1.72e-08!12;CL:0000412!1.72e-08!12;CL:0000182!1.72e-08!12;CL:1000306!6.94e-08!4;CL:0002547!6.94e-08!4;CL:0002594!1.71e-07!4;CL:0002322!9.78e-07!5 | |||
|ontology_enrichment_celltype_v019=CL:0000182;1.47e-15;12!CL:0002322;2.68e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,1.47e-15,12;CL:0002322,2.74e-07,5 | |||
|ontology_enrichment_development_v019=UBERON:0004161;1.22e-12;11!UBERON:0009497;1.41e-10;13!UBERON:0003104;2.01e-08;31 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:114;8.98e-08;2 | |||
|ontology_enrichment_disease_v019_2=DOID:114,8.37e-08,2 | |||
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|ontology_enrichment_uberon_v019=UBERON:0002107;6.18e-23;19!UBERON:0006925;6.18e-23;19!UBERON:0002423;7.75e-17;25!UBERON:0002365;6.94e-13;31!UBERON:0002330;6.94e-13;31!UBERON:0002368;2.63e-11;33!UBERON:0007100;8.43e-10;25!UBERON:0000160;8.79e-10;17!UBERON:0005409;1.37e-09;22!UBERON:0001007;4.09e-08;81!UBERON:0000078;4.29e-08;2!UBERON:0002012;4.29e-08;2!UBERON:0008886;4.29e-08;2!UBERON:0000949;5.40e-08;43!UBERON:0002108;9.46e-08;4 | |||
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|short_description=p1@APOA1 | |||
}} |
Revision as of 15:53, 10 September 2013
Short description: | p1@APOA1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_APOA1_5end |
Coexpression cluster: | C129_liver_Hepatocyte_colon_duodenum_temporal_testicular_small |
Association with transcript: | 0bp_to_ENST00000375323, NM_000039, uc001ppv.1_5end |
EntrezGene: | APOA1 |
HGNC: | 600 |
UniProt: | P02647 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 1.47e-15 | 12 |
embryonic stem cell | 2.74e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
heart disease | 8.37e-08 | 2 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.