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MCL coexpression mm9:2846: Difference between revisions

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|ontology_enrichment_disease=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0000077!6.75e-14!35;UBERON:0004177!1.31e-12!29;UBERON:0005057!1.31e-12!29;UBERON:0002390!2.92e-12!45;UBERON:0003061!2.92e-12!45;UBERON:0002193!8.02e-12!48;UBERON:0002405!8.02e-12!48;UBERON:0001004!1.34e-11!42;UBERON:0000065!3.02e-11!41;UBERON:0006562!1.49e-10!24;UBERON:0001557!1.49e-10!24;UBERON:0001042!1.49e-10!24;UBERON:0008814!1.49e-10!24;UBERON:0009145!1.49e-10!24;UBERON:0003408!2.35e-10!24;UBERON:0002370!5.12e-10!23;UBERON:0000974!5.12e-10!23;UBERON:0004807!5.12e-10!23;UBERON:0005058!5.12e-10!23;UBERON:0003351!5.12e-10!23;UBERON:0009113!5.12e-10!23;UBERON:0003295!5.12e-10!23;UBERON:0009722!5.12e-10!23;UBERON:0005562!5.12e-10!23;UBERON:0007690!5.12e-10!23;UBERON:0001041!7.98e-09!80;UBERON:0003081!2.17e-08!87;UBERON:0000072!1.86e-07!27;UBERON:0005911!9.87e-07!69
|ontology_enrichment_uberon=UBERON:0000077!6.75e-14!35;UBERON:0004177!1.31e-12!29;UBERON:0005057!1.31e-12!29;UBERON:0002390!2.92e-12!45;UBERON:0003061!2.92e-12!45;UBERON:0002193!8.02e-12!48;UBERON:0002405!8.02e-12!48;UBERON:0001004!1.34e-11!42;UBERON:0000065!3.02e-11!41;UBERON:0006562!1.49e-10!24;UBERON:0001557!1.49e-10!24;UBERON:0001042!1.49e-10!24;UBERON:0008814!1.49e-10!24;UBERON:0009145!1.49e-10!24;UBERON:0003408!2.35e-10!24;UBERON:0002370!5.12e-10!23;UBERON:0000974!5.12e-10!23;UBERON:0004807!5.12e-10!23;UBERON:0005058!5.12e-10!23;UBERON:0003351!5.12e-10!23;UBERON:0009113!5.12e-10!23;UBERON:0003295!5.12e-10!23;UBERON:0009722!5.12e-10!23;UBERON:0005562!5.12e-10!23;UBERON:0007690!5.12e-10!23;UBERON:0001041!7.98e-09!80;UBERON:0003081!2.17e-08!87;UBERON:0000072!1.86e-07!27;UBERON:0005911!9.87e-07!69
|tfbs_overrepresentation_for_novel_motifs=0.752782,1.07244,0.722405,0.801166,0.587814,0.81763,0.919454,0.467321,1.20566,0.66329,0.870507,0.906098,0.467629,0.933025,0.608226,0,1.14208,0.578045,0.448066,0.876292,0.679146,0.275782,0.932027,0.585919,0.731217,0.963352,0.437236,0.841386,0.64294,0.99159,0.825437,1.24901,0.575271,0.411696,0.608816,0.872889,1.38481,0.902078,0.536514,2.16143,0.582863,0.831295,0.724277,0.610669,0.156582,0.788421,1.05665,0.859154,0.235354,0.646474,1.12346,0.99279,0.371606,1.3966,1.41464,0.940919,0.657156,0.891887,0.425455,0.938668,1.22795,1.00308,0.494668,1.11142,0.953187,1.15459,1.55483,1.90983,1.22303,1.7608,0.700291,1.19585,0.777706,1.44925,1.07031,1.83166,0.411601,1.04436,1.20986,0.684144,0.476502,1.16055,1.00151,0.459035,1.32978,0.181575,0.195254,0.380977,1.06194,2.07346,1.62608,1.33496,1.26245,0.595071,0.531443,0.509215,0.464141,1.26539,1.05692,0.352122,0.563856,1.24872,1.37854,1.12409,1.12297,0.830796,1.18646,0.854628,0.689894,0.681267,0.744607,1.38039,0.685481,0.876299,1.63327,0.580657,0.609576,0.805461,1.14346,0.559153,1.45481,1.08896,0.965352,1.04338,1.68841,1.21376,0.928483,1.25534,1.55328,0.598722,1.36093,0.792832,1.52297,0.955954,1.65529,0.273451,0.762499,0.832891,1.60513,2.44352,2.04137,1.55966,0.978551,1.26,1.11604,0.831808,1.06002,2.40374,0.765221,1.44008,1.77018,0.260379,1.39822,2.21624,0.954936,1.48249,0.993889,0.622823,0.749933,0.762177,1.61484,1.32889,1.21423,0.741984,1.11251,0.94678,0.562367,0.904334,0.421338
}}
}}

Revision as of 22:02, 26 November 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr13:45485103..45485119,+p1@Mylip
Mm9::chr14:75347648..75347665,-p2@Lrch1
Mm9::chr14:75347672..75347690,-p1@Lrch1


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
mixed endoderm/mesoderm-derived structure6.75e-1435
hemopoietic organ1.31e-1229
immune organ1.31e-1229
hematopoietic system2.92e-1245
blood island2.92e-1245
hemolymphoid system8.02e-1248
immune system8.02e-1248
respiratory system1.34e-1142
respiratory tract3.02e-1141
pharynx1.49e-1024
upper respiratory tract1.49e-1024
chordate pharynx1.49e-1024
pharyngeal arch system1.49e-1024
pharyngeal region of foregut1.49e-1024
gland of gut2.35e-1024
thymus5.12e-1023
neck5.12e-1023
respiratory system epithelium5.12e-1023
hemolymphoid system gland5.12e-1023
pharyngeal epithelium5.12e-1023
thymic region5.12e-1023
pharyngeal gland5.12e-1023
entire pharyngeal arch endoderm5.12e-1023
thymus primordium5.12e-1023
early pharyngeal endoderm5.12e-1023
foregut7.98e-0980
lateral plate mesoderm2.17e-0887
segment of respiratory tract1.86e-0727
endo-epithelium9.87e-0769


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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