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|gostat_on_MCL_coexpression=GO:0006620;posttranslational protein targeting to membrane;0.0497945760311456;11426!
|gostat_on_MCL_coexpression=GO:0006620;posttranslational protein targeting to membrane;0.0497945760311456;11426!
|ontology_enrichment_celltype=CL:0000988!9.28e-09!32;CL:0002032!9.28e-09!32;CL:0000037!9.28e-09!32;CL:0000566!9.28e-09!32;CL:0000837!9.28e-09!32;CL:0000838!5.92e-08!12;CL:0000084!2.83e-07!11;CL:0000827!2.83e-07!11;CL:0002031!5.52e-07!25;CL:0000542!8.46e-07!13;CL:0000051!8.46e-07!13
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0002193!1.22e-14!48;UBERON:0002405!1.22e-14!48;UBERON:0002390!3.31e-13!45;UBERON:0003061!3.31e-13!45;UBERON:0000077!3.62e-10!35;UBERON:0004119!4.37e-10!118;UBERON:0000925!4.37e-10!118;UBERON:0006595!4.37e-10!118;UBERON:0004177!4.69e-10!29;UBERON:0005057!4.69e-10!29;UBERON:0001007!5.66e-10!116;UBERON:0001555!5.66e-10!116;UBERON:0007026!5.66e-10!116;UBERON:0004921!2.38e-09!114;UBERON:0001041!8.70e-09!80;UBERON:0003081!3.68e-08!87;UBERON:0003408!6.78e-08!24;UBERON:0001004!1.18e-07!42;UBERON:0006562!1.59e-07!24;UBERON:0001557!1.59e-07!24;UBERON:0001042!1.59e-07!24;UBERON:0008814!1.59e-07!24;UBERON:0009145!1.59e-07!24;UBERON:0002370!1.87e-07!23;UBERON:0000974!1.87e-07!23;UBERON:0004807!1.87e-07!23;UBERON:0005058!1.87e-07!23;UBERON:0003351!1.87e-07!23;UBERON:0009113!1.87e-07!23;UBERON:0003295!1.87e-07!23;UBERON:0009722!1.87e-07!23;UBERON:0005562!1.87e-07!23;UBERON:0007690!1.87e-07!23;UBERON:0000065!2.90e-07!41;UBERON:0000926!5.94e-07!120;UBERON:0004120!5.94e-07!120;UBERON:0006603!5.94e-07!120;UBERON:0005911!7.55e-07!69
}}
}}

Revision as of 21:18, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr14:66851239..66851256,-p@chr14:66851239..66851256
-
Mm9::chr18:67405472..67405496,-p4@Mppe1
Mm9::chr19:21788330..21788351,+p@chr19:21788330..21788351
+
Mm9::chr1:165992178..165992189,+p4@Sell
Mm9::chr2:118554166..118554182,-p3@Plcb2
Mm9::chr2:174439659..174439719,+p@chr2:174439659..174439719
+
Mm9::chr4:123241915..123241944,-p3@Macf1
Mm9::chr7:113788143..113788177,-p1@uc009izu.1
p1@uc009izv.1
p1@uc012fru.1
Mm9::chr8:47824807..47824868,-p1@ENSMUST00000126988
p1@uc009lqn.1


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0006620posttranslational protein targeting to membrane0.0497945760311456



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
hemolymphoid system1.22e-1448
immune system1.22e-1448
hematopoietic system3.31e-1345
blood island3.31e-1345
mixed endoderm/mesoderm-derived structure3.62e-1035
endoderm-derived structure4.37e-10118
endoderm4.37e-10118
presumptive endoderm4.37e-10118
hemopoietic organ4.69e-1029
immune organ4.69e-1029
digestive system5.66e-10116
digestive tract5.66e-10116
primitive gut5.66e-10116
subdivision of digestive tract2.38e-09114
foregut8.70e-0980
lateral plate mesoderm3.68e-0887
gland of gut6.78e-0824
respiratory system1.18e-0742
pharynx1.59e-0724
upper respiratory tract1.59e-0724
chordate pharynx1.59e-0724
pharyngeal arch system1.59e-0724
pharyngeal region of foregut1.59e-0724
thymus1.87e-0723
neck1.87e-0723
respiratory system epithelium1.87e-0723
hemolymphoid system gland1.87e-0723
pharyngeal epithelium1.87e-0723
thymic region1.87e-0723
pharyngeal gland1.87e-0723
entire pharyngeal arch endoderm1.87e-0723
thymus primordium1.87e-0723
early pharyngeal endoderm1.87e-0723
respiratory tract2.90e-0741
mesoderm5.94e-07120
mesoderm-derived structure5.94e-07120
presumptive mesoderm5.94e-07120
endo-epithelium7.55e-0769


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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