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MCL coexpression mm9:2863: Difference between revisions

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|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=CL:0002242!8.63e-07!16
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0000490!8.25e-11!66;UBERON:0003929!2.03e-10!55;UBERON:0004177!3.62e-10!29;UBERON:0005057!3.62e-10!29;UBERON:0004119!7.38e-10!118;UBERON:0000925!7.38e-10!118;UBERON:0006595!7.38e-10!118;UBERON:0000077!7.73e-10!35;UBERON:0001007!2.11e-09!116;UBERON:0001555!2.11e-09!116;UBERON:0007026!2.11e-09!116;UBERON:0004921!4.58e-09!114;UBERON:0000072!1.31e-08!27;UBERON:0002370!2.58e-08!23;UBERON:0000974!2.58e-08!23;UBERON:0004807!2.58e-08!23;UBERON:0005058!2.58e-08!23;UBERON:0003351!2.58e-08!23;UBERON:0009113!2.58e-08!23;UBERON:0003295!2.58e-08!23;UBERON:0009722!2.58e-08!23;UBERON:0005562!2.58e-08!23;UBERON:0007690!2.58e-08!23;UBERON:0004923!1.26e-07!24;UBERON:0006562!1.66e-07!24;UBERON:0001557!1.66e-07!24;UBERON:0001042!1.66e-07!24;UBERON:0008814!1.66e-07!24;UBERON:0009145!1.66e-07!24;UBERON:0003408!2.51e-07!24;UBERON:0002368!5.91e-07!60
}}
}}

Revision as of 19:09, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr13:58502881..58502951,-p@chr13:58502881..58502951
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Mm9::chr15:84753813..84753852,+p1@Nup50
Mm9::chr17:57150813..57150828,-p2@Gtf2f1


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Cell Type
Ontology termp-valuen
nucleate cell8.63e-0716

Uber Anatomy
Ontology termp-valuen
unilaminar epithelium8.25e-1166
gut epithelium2.03e-1055
hemopoietic organ3.62e-1029
immune organ3.62e-1029
endoderm-derived structure7.38e-10118
endoderm7.38e-10118
presumptive endoderm7.38e-10118
mixed endoderm/mesoderm-derived structure7.73e-1035
digestive system2.11e-09116
digestive tract2.11e-09116
primitive gut2.11e-09116
subdivision of digestive tract4.58e-09114
segment of respiratory tract1.31e-0827
thymus2.58e-0823
neck2.58e-0823
respiratory system epithelium2.58e-0823
hemolymphoid system gland2.58e-0823
pharyngeal epithelium2.58e-0823
thymic region2.58e-0823
pharyngeal gland2.58e-0823
entire pharyngeal arch endoderm2.58e-0823
thymus primordium2.58e-0823
early pharyngeal endoderm2.58e-0823
organ component layer1.26e-0724
pharynx1.66e-0724
upper respiratory tract1.66e-0724
chordate pharynx1.66e-0724
pharyngeal arch system1.66e-0724
pharyngeal region of foregut1.66e-0724
gland of gut2.51e-0724
endocrine gland5.91e-0760


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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