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MCL coexpression mm9:102: Difference between revisions

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|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0.798930620651889,0.905873255449872,0.835792834727366,0.306919693317858,0.235010375921817,0.693517381032597,0.635682279758548,0,0,0,0.212433811736393,0.149632666139897,0.153628809860867,0,0.0411126530948397,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.337355066519133,0.728530130822386,0.639579911444449,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0779940823202437,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.100004302423367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0932921651944173,0,0.0519509775191307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127090816446242,0.107177024667156,0.105986777695408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0492938041367021,0.0598244186619439,0.0417740847988257,0.031895734489288,0.041718751492076,0.0773372897074742,0.0764305931706906,0.130536619167171,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0.798930620651889,0.905873255449872,0.835792834727366,0.306919693317858,0.235010375921817,0.693517381032597,0.635682279758548,0,0,0,0.212433811736393,0.149632666139897,0.153628809860867,0,0.0411126530948397,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.337355066519133,0.728530130822386,0.639579911444449,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0779940823202437,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.100004302423367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0932921651944173,0,0.0519509775191307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127090816446242,0.107177024667156,0.105986777695408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0492938041367021,0.0598244186619439,0.0417740847988257,0.031895734489288,0.041718751492076,0.0773372897074742,0.0764305931706906,0.130536619167171,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0
|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=CL:0000838!4.89e-32!12;CL:0000791!1.21e-29!9;CL:0000789!1.21e-29!9;CL:0002420!1.21e-29!9;CL:0002419!1.21e-29!9;CL:0000790!1.21e-29!9;CL:0000542!2.09e-29!13;CL:0000051!2.09e-29!13;CL:0000084!5.58e-29!11;CL:0000827!5.58e-29!11;CL:0000624!1.58e-26!8;CL:0002242!1.75e-23!16;CL:0002031!2.15e-23!25;CL:0000988!4.53e-23!32;CL:0002032!4.53e-23!32;CL:0000037!4.53e-23!32;CL:0000566!4.53e-23!32;CL:0000837!4.53e-23!32;CL:0000738!5.68e-22!17;CL:0002087!5.68e-22!17;CL:0000893!3.63e-20!6;CL:0002489!3.63e-20!6;CL:0000898!3.63e-20!6;CL:0000809!3.63e-20!6;CL:0000810!3.63e-20!6;CL:0000895!3.63e-20!6;CL:0000808!3.63e-20!6;CL:0000894!3.63e-20!6;CL:0000806!3.63e-20!6;CL:0000807!3.63e-20!6;CL:0000805!3.63e-20!6;CL:0002425!3.63e-20!6;CL:0002436!3.63e-20!6;CL:0002427!3.63e-20!6;CL:0002428!3.63e-20!6;CL:0002429!3.63e-20!6;CL:0002433!3.63e-20!6;CL:0002431!3.63e-20!6;CL:0002432!3.63e-20!6;CL:0002320!4.54e-17!46;CL:0000134!4.54e-17!46;CL:0000219!5.25e-14!54;CL:0000034!2.56e-09!97;CL:0000723!7.28e-07!91;CL:0000048!7.28e-07!91
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0002370!9.03e-24!23;UBERON:0000974!9.03e-24!23;UBERON:0004807!9.03e-24!23;UBERON:0005058!9.03e-24!23;UBERON:0003351!9.03e-24!23;UBERON:0009113!9.03e-24!23;UBERON:0003295!9.03e-24!23;UBERON:0009722!9.03e-24!23;UBERON:0005562!9.03e-24!23;UBERON:0007690!9.03e-24!23;UBERON:0006562!1.16e-22!24;UBERON:0003408!1.16e-22!24;UBERON:0001557!1.16e-22!24;UBERON:0001042!1.16e-22!24;UBERON:0008814!1.16e-22!24;UBERON:0009145!1.16e-22!24;UBERON:0000072!7.92e-20!27;UBERON:0004177!2.90e-18!29;UBERON:0005057!2.90e-18!29;UBERON:0002193!1.75e-17!48;UBERON:0002405!1.75e-17!48;UBERON:0002384!4.54e-17!46;UBERON:0000077!6.03e-17!35;UBERON:0002390!1.12e-16!45;UBERON:0003061!1.12e-16!45;UBERON:0000063!1.20e-14!35;UBERON:0007811!3.68e-14!36;UBERON:0000065!4.35e-12!41;UBERON:0001004!9.85e-12!42;UBERON:0000153!2.15e-11!43;UBERON:0003929!1.13e-09!55;UBERON:0002368!1.29e-08!60;UBERON:0003081!5.67e-08!87;UBERON:0002530!1.01e-07!65;UBERON:0000490!1.46e-07!66;UBERON:0005911!4.19e-07!69
}}
}}

Revision as of 16:11, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr10:13687627..13687647,+p@chr10:13687627..13687647
+
Mm9::chr10:39089366..39089401,-p@chr10:39089366..39089401
-
Mm9::chr10:43717233..43717248,-p@chr10:43717233..43717248
-
Mm9::chr10:59814599..59814619,-p@chr10:59814599..59814619
-
Mm9::chr10:96079632..96079649,+p1@Btg1
Mm9::chr11:100710941..100710952,+p@chr11:100710941..100710952
+
Mm9::chr11:103127512..103127518,+p@chr11:103127512..103127518
+
Mm9::chr11:11586708..11586739,-p@chr11:11586708..11586739
-
Mm9::chr11:20991300..20991342,+p1@Peli1
Mm9::chr11:3232256..3232279,-p@chr11:3232256..3232279
-
Mm9::chr11:54950493..54950521,+p1@ENSMUST00000155883
p1@uc007iyy.1
Mm9::chr11:96328571..96328590,+p@chr11:96328571..96328590
+
Mm9::chr11:97856364..97856372,+p@chr11:97856364..97856372
+
Mm9::chr12:114099283..114099297,+p@chr12:114099283..114099297
+
Mm9::chr12:77187850..77187865,+p@chr12:77187850..77187865
+
Mm9::chr12:81892166..81892183,-p@chr12:81892166..81892183
-
Mm9::chr13:112597968..112597986,+p@chr13:112597968..112597986
+
Mm9::chr13:30878265..30878281,+p@chr13:30878265..30878281
+
Mm9::chr13:51895601..51895614,+p@chr13:51895601..51895614
+
Mm9::chr14:122314996..122315015,-p2@Gpr18
Mm9::chr15:100429398..100429446,+p@chr15:100429398..100429446
+
Mm9::chr15:25773040..25773100,+p1@Fam134b
Mm9::chr15:96468616..96468630,-p@chr15:96468616..96468630
-
Mm9::chr15:96468921..96468943,+p@chr15:96468921..96468943
+
Mm9::chr15:96469102..96469106,+p@chr15:96469102..96469106
+
Mm9::chr16:52034044..52034050,+p@chr16:52034044..52034050
+
Mm9::chr17:15843076..15843097,-p@chr17:15843076..15843097
-
Mm9::chr17:21610807..21610830,+p@chr17:21610807..21610830
+
Mm9::chr17:51953197..51953208,-p@chr17:51953197..51953208
-
Mm9::chr17:52043530..52043547,+p@chr17:52043530..52043547
+
Mm9::chr17:52301975..52302003,-p@chr17:52301975..52302003
-
Mm9::chr17:66303462..66303475,+p@chr17:66303462..66303475
+
Mm9::chr17:66451039..66451054,+p@chr17:66451039..66451054
+
Mm9::chr17:66451347..66451358,-p3@Ndufv2
Mm9::chr17:71201572..71201601,-p10@Tgif1
Mm9::chr17:8118736..8118743,+p4@Tagap
Mm9::chr17:8118822..8118836,+p3@Tagap
Mm9::chr18:14841821..14841840,-p2@Ss18
Mm9::chr18:35092238..35092262,-p@chr18:35092238..35092262
-
Mm9::chr18:5593880..5593898,+p13@Zeb1
Mm9::chr18:5593925..5593940,-p@chr18:5593925..5593940
-
Mm9::chr18:80806450..80806462,-p@chr18:80806450..80806462
-
Mm9::chr18:80904011..80904025,+p@chr18:80904011..80904025
+
Mm9::chr19:10904387..10904392,-p3@Cd6
Mm9::chr19:11560208..11560218,-p@chr19:11560208..11560218
-
Mm9::chr19:11560378..11560394,+p@chr19:11560378..11560394
+
Mm9::chr19:11560398..11560431,+p@chr19:11560398..11560431
+
Mm9::chr19:24551223..24551242,+p@chr19:24551223..24551242
+
Mm9::chr19:24551245..24551256,+p@chr19:24551245..24551256
+
Mm9::chr19:32787236..32787250,-p3@Atad1
Mm9::chr1:156945323..156945361,+p@chr1:156945323..156945361
+
Mm9::chr1:161977865..161977879,-p@chr1:161977865..161977879
-
Mm9::chr1:182260601..182260624,+p2@Itpkb
Mm9::chr1:182260626..182260667,+p1@Itpkb
Mm9::chr1:44158481..44158486,+p@chr1:44158481..44158486
+
Mm9::chr1:61031216..61031241,-p@chr1:61031216..61031241
-
Mm9::chr1:64579145..64579168,+p6@Creb1
Mm9::chr2:11575215..11575225,+p@chr2:11575215..11575225
+
Mm9::chr2:127163290..127163293,+p@chr2:127163290..127163293
+
Mm9::chr2:156947705..156947713,-p@chr2:156947705..156947713
-
Mm9::chr2:181428375..181428406,+p@chr2:181428375..181428406
+
Mm9::chr2:18873786..18873822,-p@chr2:18873786..18873822
-
Mm9::chr2:34817271..34817308,-p4@Traf1
Mm9::chr2:34817322..34817338,-p6@Traf1
Mm9::chr2:34817473..34817489,-p3@Traf1
Mm9::chr2:34819233..34819242,+p@chr2:34819233..34819242
+
Mm9::chr2:34819264..34819271,-p@chr2:34819264..34819271
-
Mm9::chr2:73290881..73290891,+p@chr2:73290881..73290891
+
Mm9::chr2:91076997..91077012,-p4@Ddb2
Mm9::chr3:101091469..101091477,-p@chr3:101091469..101091477
-
Mm9::chr3:101091805..101091816,-p2@Cd2
Mm9::chr3:101094662..101094677,-p@chr3:101094662..101094677
-
Mm9::chr3:106588396..106588407,+p@chr3:106588396..106588407
+
Mm9::chr3:106591486..106591497,-p@chr3:106591486..106591497
-
Mm9::chr3:126299326..126299337,+p@chr3:126299326..126299337
+
Mm9::chr3:137806886..137806901,+p5@Rg9mtd2
Mm9::chr3:60407657..60407673,+p@chr3:60407657..60407673
+
Mm9::chr4:102241701..102241708,-p@chr4:102241701..102241708
-
Mm9::chr4:102241713..102241741,-p@chr4:102241713..102241741
-
Mm9::chr4:102241756..102241763,-p@chr4:102241756..102241763
-
Mm9::chr4:129249813..129249831,+p@chr4:129249813..129249831
+
Mm9::chr4:129252530..129252541,-p@chr4:129252530..129252541
-
Mm9::chr4:129497159..129497177,-p@chr4:129497159..129497177
-
Mm9::chr4:133307533..133307544,-p@chr4:133307533..133307544
-
Mm9::chr4:15885562..15885594,-p@chr4:15885562..15885594
-
Mm9::chr4:32326398..32326418,+p@chr4:32326398..32326418
+
Mm9::chr4:32326424..32326445,+p@chr4:32326424..32326445
+
Mm9::chr4:63048107..63048117,-p@chr4:63048107..63048117
-
Mm9::chr5:123440413..123440416,-p@chr5:123440413..123440416
-
Mm9::chr5:123440767..123440778,+p@chr5:123440767..123440778
+
Mm9::chr5:149211592..149211605,+p@chr5:149211592..149211605
+
Mm9::chr5:149211722..149211725,+p@chr5:149211722..149211725
+
Mm9::chr6:106744586..106744610,-p@chr6:106744586..106744610
-
Mm9::chr6:114871796..114871855,-p1@Vgll4
Mm9::chr6:117857191..117857202,+p13@Hnrnpf
Mm9::chr6:125215364..125215372,-p@chr6:125215364..125215372
-
Mm9::chr6:129131940..129131951,+p@chr6:129131940..129131951
+
Mm9::chr6:129132851..129132862,-p@chr6:129132851..129132862
-
Mm9::chr6:41063367..41063378,+p2@uc009bnw.1
Mm9::chr6:48651957..48651962,-p@chr6:48651957..48651962
-
Mm9::chr6:48658173..48658202,-p2@Gimap6
Mm9::chr6:48658305..48658331,+p@chr6:48658305..48658331
+
Mm9::chr6:48658339..48658350,+p@chr6:48658339..48658350
+
Mm9::chr6:48675780..48675792,+p@chr6:48675780..48675792
+
Mm9::chr6:48687363..48687393,+p@chr6:48687363..48687393
+
Mm9::chr6:48688904..48688912,-p@chr6:48688904..48688912
-
Mm9::chr6:48720743..48720761,-p5@Gimap3
Mm9::chr6:82602619..82602640,+p@chr6:82602619..82602640
+
Mm9::chr6:86476638..86476713,+p1@ENSMUST00000125431
p1@uc009csd.1
Mm9::chr6:99045597..99045607,-p@chr6:99045597..99045607
-
Mm9::chr6:99045714..99045725,+p@chr6:99045714..99045725
+
Mm9::chr6:99215016..99215036,+p@chr6:99215016..99215036
+
Mm9::chr7:104100352..104100391,-p1@ENSMUST00000137923
p1@uc009iiv.1
Mm9::chr7:132695822..132695825,+p4@Il4ra
Mm9::chr7:132751140..132751183,+p@chr7:132751140..132751183
+
Mm9::chr7:135519623..135519633,-p@chr7:135519623..135519633
-
Mm9::chr7:35173623..35173690,+p1@ENSMUST00000145961
Mm9::chr7:75431019..75431039,+p@chr7:75431019..75431039
+
Mm9::chr8:124430603..124430608,+p@chr8:124430603..124430608
+
Mm9::chr8:14961901..14961913,+p@chr8:14961901..14961913
+
Mm9::chr8:73134598..73134617,+p@chr8:73134598..73134617
+
Mm9::chr8:87502066..87502070,+p@chr8:87502066..87502070
+
Mm9::chr9:108954497..108954507,+p@chr9:108954497..108954507
+
Mm9::chr9:21171867..21171886,-p@chr9:21171867..21171886
-
Mm9::chr9:62191079..62191117,-p@chr9:62191079..62191117
-
Mm9::chr9:7871976..7871987,+p@chr9:7871976..7871987
+
Mm9::chr9:7871994..7872010,+p@chr9:7871994..7872010
+
Mm9::chrX:50266652..50266675,+p@chrX:50266652..50266675
+
Mm9::chrX:98469284..98469298,-p@chrX:98469284..98469298
-


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Cell Type
Ontology termp-valuen
lymphoid lineage restricted progenitor cell4.89e-3212
mature alpha-beta T cell1.21e-299
alpha-beta T cell1.21e-299
immature T cell1.21e-299
mature T cell1.21e-299
immature alpha-beta T cell1.21e-299
lymphocyte2.09e-2913
common lymphoid progenitor2.09e-2913
T cell5.58e-2911
pro-T cell5.58e-2911
CD4-positive, alpha-beta T cell1.58e-268
nucleate cell1.75e-2316
hematopoietic lineage restricted progenitor cell2.15e-2325
hematopoietic cell4.53e-2332
hematopoietic oligopotent progenitor cell4.53e-2332
hematopoietic stem cell4.53e-2332
angioblastic mesenchymal cell4.53e-2332
hematopoietic multipotent progenitor cell4.53e-2332
leukocyte5.68e-2217
nongranular leukocyte5.68e-2217
thymocyte3.63e-206
double negative thymocyte3.63e-206
naive T cell3.63e-206
double-positive, alpha-beta thymocyte3.63e-206
CD4-positive, alpha-beta thymocyte3.63e-206
naive thymus-derived CD4-positive, alpha-beta T cell3.63e-206
DN4 thymocyte3.63e-206
DN1 thymic pro-T cell3.63e-206
DN2 thymocyte3.63e-206
DN3 thymocyte3.63e-206
immature single positive thymocyte3.63e-206
early T lineage precursor3.63e-206
mature CD4 single-positive thymocyte3.63e-206
resting double-positive thymocyte3.63e-206
double-positive blast3.63e-206
CD69-positive double-positive thymocyte3.63e-206
CD69-positive, CD4-positive single-positive thymocyte3.63e-206
CD4-positive, CD8-intermediate double-positive thymocyte3.63e-206
CD24-positive, CD4 single-positive thymocyte3.63e-206
connective tissue cell4.54e-1746
mesenchymal cell4.54e-1746
motile cell5.25e-1454
stem cell2.56e-0997
somatic stem cell7.28e-0791
multi fate stem cell7.28e-0791

Uber Anatomy
Ontology termp-valuen
thymus9.03e-2423
neck9.03e-2423
respiratory system epithelium9.03e-2423
hemolymphoid system gland9.03e-2423
pharyngeal epithelium9.03e-2423
thymic region9.03e-2423
pharyngeal gland9.03e-2423
entire pharyngeal arch endoderm9.03e-2423
thymus primordium9.03e-2423
early pharyngeal endoderm9.03e-2423
pharynx1.16e-2224
gland of gut1.16e-2224
upper respiratory tract1.16e-2224
chordate pharynx1.16e-2224
pharyngeal arch system1.16e-2224
pharyngeal region of foregut1.16e-2224
segment of respiratory tract7.92e-2027
hemopoietic organ2.90e-1829
immune organ2.90e-1829
hemolymphoid system1.75e-1748
immune system1.75e-1748
connective tissue4.54e-1746
mixed endoderm/mesoderm-derived structure6.03e-1735
hematopoietic system1.12e-1645
blood island1.12e-1645
organ segment1.20e-1435
craniocervical region3.68e-1436
respiratory tract4.35e-1241
respiratory system9.85e-1242
anterior region of body2.15e-1143
gut epithelium1.13e-0955
endocrine gland1.29e-0860
lateral plate mesoderm5.67e-0887
gland1.01e-0765
unilaminar epithelium1.46e-0766
endo-epithelium4.19e-0769


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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